Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18630

Experiment: Rifampicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.005 mg/ml
4,099,230	+		AO353_18625	0.59	+0.5
4,099,230	+		AO353_18625	0.59	+0.2
4,099,231	-		AO353_18625	0.59	-0.1
4,099,275	+		AO353_18625	0.62	-0.5
4,099,275	+		AO353_18625	0.62	-0.7
4,099,276	-		AO353_18625	0.62	-0.4
4,099,276	-		AO353_18625	0.62	-1.5
4,099,276	-		AO353_18625	0.62	-0.9
4,099,276	-		AO353_18625	0.62	+1.2
4,099,297	+		AO353_18625	0.63	+0.2
4,099,297	+		AO353_18625	0.63	-0.9
4,099,298	-		AO353_18625	0.63	+0.1
4,099,298	-		AO353_18625	0.63	-0.9
4,099,363	+		AO353_18625	0.68	-0.2
4,099,490	+		AO353_18625	0.76	-0.1
4,099,490	+		AO353_18625	0.76	-0.5
4,099,527	+		AO353_18625	0.78	-1.0
4,099,528	-		AO353_18625	0.78	-1.9
4,099,528	-		AO353_18625	0.78	-2.5
4,099,528	-		AO353_18625	0.78	-0.3
4,099,596	+		AO353_18625	0.82	-1.2
4,099,596	+		AO353_18625	0.82	+0.9
4,099,596	+		AO353_18625	0.82	+0.6
4,099,597	-		AO353_18625	0.82	-0.4
4,099,597	-		AO353_18625	0.82	-1.2
4,099,597	-		AO353_18625	0.82	-1.0
4,099,597	-		AO353_18625	0.82	-0.2
4,099,657	-		AO353_18625	0.86	-1.6
4,099,683	+		AO353_18625	0.88	-2.3
4,099,683	+		AO353_18625	0.88	-0.8
4,099,905	-				-2.4
4,099,969	+				-0.4
4,099,970	-				-0.8
4,099,981	+				+1.1
4,099,985	+				+2.0
4,099,985	+				+2.3
4,099,985	+				+1.4
4,099,985	+				+1.1
4,099,986	-				-0.8
4,099,986	-				-3.8
4,099,986	-				-1.3
4,099,986	-				+0.2
4,099,986	-				-1.8
4,099,986	-				-1.7
4,099,986	-				-1.2
4,100,036	+				+2.1
4,100,036	+				+1.8
4,100,037	-				-2.8
4,100,037	-				-1.2
4,100,037	-				-1.9
4,100,160	+				+0.2
4,100,161	-				-0.5
4,100,161	-				-0.2
4,100,161	-				-2.7
4,100,172	+				-1.0
4,100,173	-				+1.8
4,100,173	-				-2.4
4,100,173	-				-3.5
4,100,173	-				-2.2
4,100,173	-				+0.8
4,100,173	-				-0.2
4,100,188	+				+1.2
4,100,188	+				+0.8
4,100,208	-				-2.5
4,100,208	-				-1.0
4,100,244	+				-2.5
4,100,244	+				-1.6
4,100,244	+				-1.5
4,100,244	+				-3.0
4,100,244	+				-1.4
4,100,244	+				-1.9
4,100,245	-				-2.3
4,100,245	-				-3.4
4,100,245	-				-1.2
4,100,296	+		AO353_18630	0.11	-0.5
4,100,296	+		AO353_18630	0.11	-2.5
4,100,297	-		AO353_18630	0.12	-1.6
4,100,297	-		AO353_18630	0.12	-0.8
4,100,297	-		AO353_18630	0.12	-1.4
4,100,297	-		AO353_18630	0.12	-1.5
4,100,297	-		AO353_18630	0.12	-2.5
4,100,297	-		AO353_18630	0.12	-2.0
4,100,516	+		AO353_18630	0.35	-2.9
4,100,517	-		AO353_18630	0.35	-2.1
4,100,517	-		AO353_18630	0.35	-1.6
4,100,539	-		AO353_18630	0.38	+0.1
4,100,544	+		AO353_18630	0.38	-3.7
4,100,545	-		AO353_18630	0.38	-0.2
4,100,553	+		AO353_18630	0.39	-2.6
4,100,553	+		AO353_18630	0.39	-3.0
4,100,553	+		AO353_18630	0.39	-1.0
4,100,553	+		AO353_18630	0.39	-1.5
4,100,553	+		AO353_18630	0.39	-1.0
4,100,553	+		AO353_18630	0.39	-2.8
4,100,553	+		AO353_18630	0.39	-2.0
4,100,553	+		AO353_18630	0.39	-2.0
4,100,553	+		AO353_18630	0.39	-3.0
4,100,553	+		AO353_18630	0.39	-1.7
4,100,553	+		AO353_18630	0.39	-2.4
4,100,553	+		AO353_18630	0.39	-1.1
4,100,553	+		AO353_18630	0.39	-1.0
4,100,554	-		AO353_18630	0.39	-3.5
4,100,554	-		AO353_18630	0.39	-1.7
4,100,554	-		AO353_18630	0.39	-2.4
4,100,554	-		AO353_18630	0.39	-2.7
4,100,554	-		AO353_18630	0.39	-1.9
4,100,554	-		AO353_18630	0.39	-2.5
4,100,554	-		AO353_18630	0.39	-0.8
4,100,554	-		AO353_18630	0.39	-2.3
4,100,651	+		AO353_18630	0.50	-2.2
4,100,993	+		AO353_18630	0.86	-3.5
4,100,994	-		AO353_18630	0.86	-1.5
4,100,994	-		AO353_18630	0.86	-2.9
4,101,105	-				-2.3
4,101,105	-				+0.1
4,101,105	-				+1.8
4,101,108	+				-1.9
4,101,108	+				-1.7
4,101,108	+				-1.7
4,101,108	+				-1.0
4,101,108	+				+0.6
4,101,109	-				-2.3
4,101,109	-				-2.3
4,101,109	-				-3.6
4,101,109	-				-1.5
4,101,109	-				-0.9
4,101,109	-				+1.8
4,101,109	-				-0.5
4,101,142	+				-0.8
4,101,143	-				-0.8
4,101,288	+				-1.8
4,101,288	+				-1.3
4,101,288	+				+0.5
4,101,288	+				-1.3
4,101,289	-				-0.0
4,101,289	-				+1.0
4,101,292	+				-0.2
4,101,292	+				-0.6
4,101,292	+				-1.3
4,101,292	+				-1.1
4,101,292	+				-0.8
4,101,292	+				-0.8
4,101,292	+				+0.8
4,101,292	+				-1.4
4,101,292	+				+0.2
4,101,293	-				+0.4
4,101,293	-				-0.8
4,101,293	-				+0.3
4,101,293	-				-0.8
4,101,293	-				-0.5
4,101,293	-				-0.4
4,101,293	-				+0.8
4,101,295	+				+0.8
4,101,295	+				+1.0
4,101,295	+				-1.1
4,101,296	-				-0.4
4,101,296	-				-0.0
4,101,296	-				-0.5
4,101,296	-				-1.4
4,101,296	-				-1.2
4,101,296	-				-0.1
4,101,385	-				-0.7
4,101,385	-				-0.7
4,101,385	-				-0.8
4,101,583	+		AO353_18635	0.15	+1.0
4,101,584	-		AO353_18635	0.15	-0.4
4,101,584	-		AO353_18635	0.15	+0.0
4,101,716	+		AO353_18635	0.24	+0.5
4,101,716	+		AO353_18635	0.24	-1.9
4,101,717	-		AO353_18635	0.24	-0.3
4,101,717	-		AO353_18635	0.24	-0.5
4,101,760	+		AO353_18635	0.27	-1.7
4,101,760	+		AO353_18635	0.27	+0.2
4,101,760	+		AO353_18635	0.27	+1.6
4,101,760	+		AO353_18635	0.27	+1.5
4,101,761	-		AO353_18635	0.27	-2.5
4,101,761	-		AO353_18635	0.27	+0.5
4,101,761	-		AO353_18635	0.27	-0.8
4,101,761	-		AO353_18635	0.27	-0.8
4,101,761	-		AO353_18635	0.27	-1.3
4,101,761	-		AO353_18635	0.27	-2.6
4,101,800	-		AO353_18635	0.30	+0.8
4,101,802	+		AO353_18635	0.30	-1.0
4,101,802	+		AO353_18635	0.30	-0.8
4,101,802	+		AO353_18635	0.30	-1.4
4,101,803	-		AO353_18635	0.30	+0.8
4,101,803	-		AO353_18635	0.30	-1.9
4,101,803	-		AO353_18635	0.30	-0.2
4,102,077	+		AO353_18635	0.49	-1.5
4,102,077	+		AO353_18635	0.49	+0.0
4,102,077	+		AO353_18635	0.49	-0.5
4,102,077	+		AO353_18635	0.49	-1.7
4,102,077	+		AO353_18635	0.49	-0.2
4,102,081	+		AO353_18635	0.49	-0.4
4,102,081	+		AO353_18635	0.49	+0.6
4,102,082	-		AO353_18635	0.49	-1.4
4,102,082	-		AO353_18635	0.49	-1.3