Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16720 and AO353_16725 are separated by 124 nucleotides AO353_16725 and AO353_16730 overlap by 4 nucleotides AO353_16730 and AO353_16735 overlap by 1 nucleotides
AO353_16720: AO353_16720 - phage tail protein, at 3,707,737 to 3,708,765
_16720
AO353_16725: AO353_16725 - hypothetical protein, at 3,708,890 to 3,709,474
_16725
AO353_16730: AO353_16730 - hypothetical protein, at 3,709,471 to 3,709,653
_16730
AO353_16735: AO353_16735 - phage tail protein, at 3,709,653 to 3,711,149
_16735
Position (kb)
3708
3709
3710 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3707.926 kb on + strand, within AO353_16720 at 3707.927 kb on - strand, within AO353_16720 at 3707.927 kb on - strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.210 kb on + strand, within AO353_16720 at 3708.211 kb on - strand, within AO353_16720 at 3708.232 kb on + strand, within AO353_16720 at 3708.232 kb on + strand, within AO353_16720 at 3708.233 kb on - strand, within AO353_16720 at 3708.233 kb on - strand, within AO353_16720 at 3708.233 kb on - strand, within AO353_16720 at 3708.233 kb on - strand, within AO353_16720 at 3708.233 kb on - strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.265 kb on + strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.266 kb on - strand, within AO353_16720 at 3708.311 kb on + strand, within AO353_16720 at 3708.311 kb on + strand, within AO353_16720 at 3708.311 kb on + strand, within AO353_16720 at 3708.312 kb on - strand, within AO353_16720 at 3708.312 kb on - strand, within AO353_16720 at 3708.312 kb on - strand, within AO353_16720 at 3708.312 kb on - strand, within AO353_16720 at 3708.369 kb on + strand, within AO353_16720 at 3708.575 kb on + strand, within AO353_16720 at 3708.623 kb on + strand, within AO353_16720 at 3708.624 kb on - strand, within AO353_16720 at 3708.624 kb on - strand, within AO353_16720 at 3708.652 kb on - strand, within AO353_16720 at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.850 kb on + strand at 3708.851 kb on - strand at 3708.870 kb on + strand at 3708.871 kb on - strand at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3709.013 kb on + strand, within AO353_16725 at 3709.013 kb on + strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.123 kb on + strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.217 kb on + strand, within AO353_16725 at 3709.218 kb on - strand, within AO353_16725 at 3709.262 kb on + strand, within AO353_16725 at 3709.464 kb on + strand at 3709.464 kb on + strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.611 kb on + strand, within AO353_16730 at 3709.651 kb on + strand at 3709.704 kb on + strand at 3709.705 kb on - strand at 3709.705 kb on - strand at 3709.705 kb on - strand at 3709.878 kb on + strand, within AO353_16735 at 3709.878 kb on + strand, within AO353_16735 at 3709.878 kb on + strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.294 kb on - strand, within AO353_16735 at 3710.369 kb on + strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 3,707,926 + AO353_16720 0.18 -0.8 3,707,927 - AO353_16720 0.18 +1.0 3,707,927 - AO353_16720 0.18 -0.2 3,708,210 + AO353_16720 0.46 -1.0 3,708,210 + AO353_16720 0.46 +0.4 3,708,210 + AO353_16720 0.46 -1.4 3,708,210 + AO353_16720 0.46 -1.9 3,708,210 + AO353_16720 0.46 +0.4 3,708,210 + AO353_16720 0.46 +0.1 3,708,211 - AO353_16720 0.46 +0.1 3,708,232 + AO353_16720 0.48 +0.4 3,708,232 + AO353_16720 0.48 -1.4 3,708,233 - AO353_16720 0.48 -2.6 3,708,233 - AO353_16720 0.48 -0.4 3,708,233 - AO353_16720 0.48 -0.3 3,708,233 - AO353_16720 0.48 +0.4 3,708,233 - AO353_16720 0.48 -0.1 3,708,265 + AO353_16720 0.51 +0.3 3,708,265 + AO353_16720 0.51 +0.6 3,708,265 + AO353_16720 0.51 -0.3 3,708,265 + AO353_16720 0.51 +3.0 3,708,265 + AO353_16720 0.51 +0.3 3,708,265 + AO353_16720 0.51 +0.8 3,708,265 + AO353_16720 0.51 +1.7 3,708,265 + AO353_16720 0.51 +0.1 3,708,265 + AO353_16720 0.51 +0.0 3,708,266 - AO353_16720 0.51 +0.8 3,708,266 - AO353_16720 0.51 +0.2 3,708,266 - AO353_16720 0.51 -1.4 3,708,266 - AO353_16720 0.51 -1.0 3,708,266 - AO353_16720 0.51 +0.2 3,708,266 - AO353_16720 0.51 -1.3 3,708,266 - AO353_16720 0.51 +0.1 3,708,266 - AO353_16720 0.51 +0.2 3,708,266 - AO353_16720 0.51 +0.1 3,708,266 - AO353_16720 0.51 -1.5 3,708,266 - AO353_16720 0.51 -1.0 3,708,266 - AO353_16720 0.51 -0.3 3,708,266 - AO353_16720 0.51 -0.3 3,708,266 - AO353_16720 0.51 -0.3 3,708,266 - AO353_16720 0.51 +0.6 3,708,266 - AO353_16720 0.51 +0.1 3,708,266 - AO353_16720 0.51 +0.9 3,708,266 - AO353_16720 0.51 +0.0 3,708,266 - AO353_16720 0.51 +0.0 3,708,311 + AO353_16720 0.56 -0.2 3,708,311 + AO353_16720 0.56 -0.4 3,708,311 + AO353_16720 0.56 -0.8 3,708,312 - AO353_16720 0.56 +0.6 3,708,312 - AO353_16720 0.56 +0.8 3,708,312 - AO353_16720 0.56 -0.6 3,708,312 - AO353_16720 0.56 -1.2 3,708,369 + AO353_16720 0.61 -0.1 3,708,575 + AO353_16720 0.81 -1.1 3,708,623 + AO353_16720 0.86 -1.9 3,708,624 - AO353_16720 0.86 +0.2 3,708,624 - AO353_16720 0.86 +0.4 3,708,652 - AO353_16720 0.89 +1.3 3,708,705 + +0.7 3,708,705 + +0.0 3,708,705 + +2.4 3,708,705 + -0.6 3,708,705 + +1.0 3,708,705 + -0.7 3,708,705 + +1.1 3,708,705 + -0.2 3,708,706 - -1.3 3,708,706 - +0.3 3,708,706 - -1.0 3,708,706 - -1.0 3,708,706 - -1.1 3,708,706 - -1.3 3,708,850 + -0.2 3,708,851 - -1.3 3,708,870 + +1.6 3,708,871 - -0.6 3,708,963 + AO353_16725 0.12 -2.2 3,708,963 + AO353_16725 0.12 -0.2 3,708,963 + AO353_16725 0.12 +0.4 3,708,963 + AO353_16725 0.12 -1.4 3,708,964 - AO353_16725 0.13 -1.5 3,708,964 - AO353_16725 0.13 -0.9 3,708,964 - AO353_16725 0.13 -2.4 3,708,964 - AO353_16725 0.13 -0.6 3,708,964 - AO353_16725 0.13 +0.3 3,709,013 + AO353_16725 0.21 +1.0 3,709,013 + AO353_16725 0.21 +1.0 3,709,014 - AO353_16725 0.21 +0.2 3,709,014 - AO353_16725 0.21 -0.3 3,709,014 - AO353_16725 0.21 -0.8 3,709,014 - AO353_16725 0.21 -0.2 3,709,123 + AO353_16725 0.40 +1.7 3,709,124 - AO353_16725 0.40 -0.7 3,709,124 - AO353_16725 0.40 -0.3 3,709,124 - AO353_16725 0.40 -2.0 3,709,124 - AO353_16725 0.40 -0.8 3,709,217 + AO353_16725 0.56 -1.7 3,709,218 - AO353_16725 0.56 -0.2 3,709,262 + AO353_16725 0.64 -1.2 3,709,464 + -1.4 3,709,464 + -0.3 3,709,465 - +0.7 3,709,465 - +0.6 3,709,465 - +0.7 3,709,465 - +0.6 3,709,465 - +0.4 3,709,465 - -0.5 3,709,465 - +0.8 3,709,465 - +1.1 3,709,611 + AO353_16730 0.77 +0.7 3,709,651 + +0.6 3,709,704 + -0.8 3,709,705 - -0.5 3,709,705 - -0.4 3,709,705 - -1.3 3,709,878 + AO353_16735 0.15 -0.6 3,709,878 + AO353_16735 0.15 +1.6 3,709,878 + AO353_16735 0.15 -0.8 3,709,879 - AO353_16735 0.15 -0.2 3,709,879 - AO353_16735 0.15 +1.0 3,709,879 - AO353_16735 0.15 -0.6 3,710,010 + AO353_16735 0.24 +0.5 3,710,010 + AO353_16735 0.24 +0.8 3,710,010 + AO353_16735 0.24 -1.8 3,710,010 + AO353_16735 0.24 -2.7 3,710,011 - AO353_16735 0.24 +0.2 3,710,011 - AO353_16735 0.24 -1.2 3,710,011 - AO353_16735 0.24 +0.4 3,710,011 - AO353_16735 0.24 -0.8 3,710,011 - AO353_16735 0.24 +1.0 3,710,294 - AO353_16735 0.43 -0.2 3,710,369 + AO353_16735 0.48 +0.3 3,710,370 - AO353_16735 0.48 +0.0 3,710,370 - AO353_16735 0.48 +1.0 3,710,370 - AO353_16735 0.48 -0.4 3,710,370 - AO353_16735 0.48 -1.7 3,710,370 - AO353_16735 0.48 -1.3 3,710,439 + AO353_16735 0.53 -1.7 3,710,439 + AO353_16735 0.53 +0.6 3,710,439 + AO353_16735 0.53 +0.0 3,710,439 + AO353_16735 0.53 +0.0 3,710,440 - AO353_16735 0.53 +0.8 3,710,440 - AO353_16735 0.53 -1.8 3,710,440 - AO353_16735 0.53 +0.8 3,710,440 - AO353_16735 0.53 -1.0 3,710,440 - AO353_16735 0.53 +0.9 3,710,440 - AO353_16735 0.53 +2.0
Or see this region's nucleotide sequence