Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15895 and AO353_15900 are separated by 40 nucleotides AO353_15900 and AO353_15905 overlap by 8 nucleotides AO353_15905 and AO353_15910 are separated by 139 nucleotides
AO353_15895: AO353_15895 - histidinol dehydrogenase, at 3,507,013 to 3,508,302
_15895
AO353_15900: AO353_15900 - GTP-binding protein, at 3,508,343 to 3,508,984
_15900
AO353_15905: AO353_15905 - outer membrane protein assembly factor BamB, at 3,508,977 to 3,510,128
_15905
AO353_15910: AO353_15910 - ribosome-associated GTPase EngA, at 3,510,268 to 3,511,737
_15910
Position (kb)
3508
3509
3510
3511 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3508.336 kb on + strand at 3508.336 kb on + strand at 3508.336 kb on + strand at 3508.469 kb on + strand, within AO353_15900 at 3508.469 kb on + strand, within AO353_15900 at 3508.469 kb on + strand, within AO353_15900 at 3508.469 kb on + strand, within AO353_15900 at 3508.610 kb on + strand, within AO353_15900 at 3508.677 kb on + strand, within AO353_15900 at 3508.944 kb on + strand at 3508.944 kb on + strand at 3508.944 kb on + strand at 3509.154 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.193 kb on + strand, within AO353_15905 at 3509.497 kb on + strand, within AO353_15905 at 3509.497 kb on + strand, within AO353_15905 at 3509.497 kb on + strand, within AO353_15905 at 3509.499 kb on + strand, within AO353_15905 at 3509.499 kb on + strand, within AO353_15905 at 3509.499 kb on + strand, within AO353_15905 at 3509.499 kb on + strand, within AO353_15905 at 3509.606 kb on + strand, within AO353_15905 at 3509.721 kb on + strand, within AO353_15905 at 3509.721 kb on + strand, within AO353_15905 at 3509.721 kb on + strand, within AO353_15905 at 3509.721 kb on + strand, within AO353_15905 at 3509.721 kb on + strand, within AO353_15905 at 3509.733 kb on + strand, within AO353_15905 at 3509.802 kb on + strand, within AO353_15905 at 3509.802 kb on + strand, within AO353_15905 at 3509.802 kb on + strand, within AO353_15905 at 3509.835 kb on + strand, within AO353_15905 at 3509.952 kb on + strand, within AO353_15905 at 3509.952 kb on + strand, within AO353_15905 at 3510.081 kb on + strand at 3510.081 kb on + strand at 3510.081 kb on + strand at 3510.081 kb on + strand at 3510.081 kb on + strand at 3510.081 kb on + strand at 3510.126 kb on + strand at 3510.126 kb on + strand at 3510.126 kb on + strand at 3510.126 kb on + strand at 3510.126 kb on + strand at 3510.138 kb on + strand at 3510.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 3,508,336 + -2.4 3,508,336 + -1.8 3,508,336 + +0.5 3,508,469 + AO353_15900 0.20 -1.0 3,508,469 + AO353_15900 0.20 -1.8 3,508,469 + AO353_15900 0.20 +1.3 3,508,469 + AO353_15900 0.20 -2.4 3,508,610 + AO353_15900 0.42 -1.3 3,508,677 + AO353_15900 0.52 -1.1 3,508,944 + -1.4 3,508,944 + -0.3 3,508,944 + -0.8 3,509,154 + AO353_15905 0.15 -2.2 3,509,193 + AO353_15905 0.19 -0.8 3,509,193 + AO353_15905 0.19 -2.2 3,509,193 + AO353_15905 0.19 -0.5 3,509,193 + AO353_15905 0.19 -0.5 3,509,193 + AO353_15905 0.19 -0.3 3,509,193 + AO353_15905 0.19 -1.3 3,509,193 + AO353_15905 0.19 -1.8 3,509,193 + AO353_15905 0.19 -1.0 3,509,193 + AO353_15905 0.19 -3.2 3,509,193 + AO353_15905 0.19 -1.8 3,509,193 + AO353_15905 0.19 -0.6 3,509,193 + AO353_15905 0.19 -2.3 3,509,193 + AO353_15905 0.19 -1.1 3,509,193 + AO353_15905 0.19 -1.7 3,509,497 + AO353_15905 0.45 -1.0 3,509,497 + AO353_15905 0.45 -1.7 3,509,497 + AO353_15905 0.45 -2.0 3,509,499 + AO353_15905 0.45 -2.0 3,509,499 + AO353_15905 0.45 -1.4 3,509,499 + AO353_15905 0.45 -1.5 3,509,499 + AO353_15905 0.45 -1.1 3,509,606 + AO353_15905 0.55 +0.0 3,509,721 + AO353_15905 0.65 -0.8 3,509,721 + AO353_15905 0.65 -0.4 3,509,721 + AO353_15905 0.65 -0.1 3,509,721 + AO353_15905 0.65 -0.8 3,509,721 + AO353_15905 0.65 +0.2 3,509,733 + AO353_15905 0.66 -2.1 3,509,802 + AO353_15905 0.72 +0.8 3,509,802 + AO353_15905 0.72 -1.1 3,509,802 + AO353_15905 0.72 -0.4 3,509,835 + AO353_15905 0.74 -2.5 3,509,952 + AO353_15905 0.85 -2.5 3,509,952 + AO353_15905 0.85 -1.8 3,510,081 + -1.0 3,510,081 + -0.8 3,510,081 + -1.3 3,510,081 + -2.2 3,510,081 + -0.5 3,510,081 + -1.7 3,510,126 + -1.5 3,510,126 + -0.1 3,510,126 + +1.7 3,510,126 + -0.8 3,510,126 + -0.2 3,510,138 + -0.5 3,510,150 + -0.5
Or see this region's nucleotide sequence