Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_12440 and AO353_12445 are separated by 268 nucleotides AO353_12445 and AO353_12450 are separated by 233 nucleotides AO353_12450 and AO353_12455 are separated by 8 nucleotides
AO353_12440: AO353_12440 - arginine--tRNA ligase, at 2,734,708 to 2,736,444
_12440
AO353_12445: AO353_12445 - primosomal protein N', at 2,736,713 to 2,738,932
_12445
AO353_12450: AO353_12450 - 50S ribosomal protein L31, at 2,739,166 to 2,739,381
_12450
AO353_12455: AO353_12455 - nuclease, at 2,739,390 to 2,740,208
_12455
Position (kb)
2736
2737
2738
2739 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.539 kb on + strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.540 kb on - strand at 2736.556 kb on + strand at 2736.556 kb on + strand at 2736.557 kb on - strand at 2736.557 kb on - strand at 2736.557 kb on - strand at 2736.570 kb on - strand at 2736.570 kb on - strand at 2736.570 kb on - strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.705 kb on + strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.706 kb on - strand at 2736.717 kb on + strand at 2736.717 kb on + strand at 2736.718 kb on - strand at 2736.718 kb on - strand at 2736.718 kb on - strand at 2738.993 kb on + strand at 2738.993 kb on + strand at 2738.994 kb on - strand at 2738.994 kb on - strand at 2739.003 kb on + strand at 2739.003 kb on + strand at 2739.003 kb on + strand at 2739.003 kb on + strand at 2739.003 kb on + strand at 2739.004 kb on - strand at 2739.004 kb on - strand at 2739.004 kb on - strand at 2739.006 kb on + strand at 2739.006 kb on + strand at 2739.007 kb on - strand at 2739.007 kb on - strand at 2739.007 kb on - strand at 2739.007 kb on - strand at 2739.190 kb on + strand, within AO353_12450 at 2739.407 kb on - strand at 2739.407 kb on - strand at 2739.407 kb on - strand at 2739.455 kb on + strand at 2739.455 kb on + strand at 2739.456 kb on - strand at 2739.599 kb on + strand, within AO353_12455 at 2739.756 kb on + strand, within AO353_12455 at 2739.756 kb on + strand, within AO353_12455 at 2739.756 kb on + strand, within AO353_12455 at 2739.756 kb on + strand, within AO353_12455 at 2739.756 kb on + strand, within AO353_12455 at 2739.757 kb on - strand, within AO353_12455 at 2739.757 kb on - strand, within AO353_12455 at 2739.913 kb on + strand, within AO353_12455
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 2,736,539 + +0.6 2,736,539 + -1.6 2,736,539 + +0.9 2,736,539 + -0.9 2,736,539 + +1.3 2,736,539 + +1.5 2,736,539 + +0.9 2,736,539 + -0.5 2,736,539 + -0.5 2,736,539 + -0.6 2,736,539 + +1.5 2,736,539 + -1.1 2,736,540 - -0.3 2,736,540 - -2.0 2,736,540 - -0.2 2,736,540 - -0.9 2,736,540 - -0.9 2,736,540 - +0.3 2,736,540 - -0.2 2,736,540 - +0.3 2,736,540 - +0.1 2,736,540 - -0.4 2,736,540 - -0.5 2,736,540 - -0.0 2,736,540 - +0.7 2,736,540 - +0.7 2,736,540 - +1.3 2,736,540 - +1.2 2,736,540 - +2.1 2,736,540 - +0.7 2,736,556 + -0.9 2,736,556 + -2.1 2,736,557 - -1.2 2,736,557 - -0.6 2,736,557 - +0.7 2,736,570 - -0.2 2,736,570 - -1.9 2,736,570 - -0.8 2,736,705 + -0.6 2,736,705 + +0.5 2,736,705 + -2.2 2,736,705 + -0.7 2,736,705 + +0.8 2,736,705 + +1.4 2,736,705 + -1.1 2,736,705 + -1.2 2,736,705 + -1.0 2,736,705 + -1.1 2,736,705 + -0.8 2,736,705 + +0.2 2,736,705 + -0.7 2,736,706 - -0.6 2,736,706 - +0.3 2,736,706 - +0.4 2,736,706 - +0.2 2,736,706 - -0.0 2,736,706 - +0.3 2,736,706 - -1.5 2,736,706 - -1.6 2,736,717 + -2.5 2,736,717 + -0.2 2,736,718 - -0.2 2,736,718 - -1.0 2,736,718 - +1.7 2,738,993 + +1.1 2,738,993 + +0.9 2,738,994 - +1.5 2,738,994 - +0.1 2,739,003 + -0.0 2,739,003 + -1.6 2,739,003 + -1.3 2,739,003 + -1.6 2,739,003 + +1.0 2,739,004 - +0.1 2,739,004 - -2.0 2,739,004 - +0.2 2,739,006 + +0.5 2,739,006 + -0.2 2,739,007 - +1.3 2,739,007 - -0.0 2,739,007 - +0.1 2,739,007 - -0.9 2,739,190 + AO353_12450 0.11 +1.8 2,739,407 - -1.4 2,739,407 - -1.8 2,739,407 - +1.3 2,739,455 + +0.7 2,739,455 + +0.5 2,739,456 - +0.6 2,739,599 + AO353_12455 0.26 -0.7 2,739,756 + AO353_12455 0.45 -0.4 2,739,756 + AO353_12455 0.45 +1.4 2,739,756 + AO353_12455 0.45 +0.1 2,739,756 + AO353_12455 0.45 +1.3 2,739,756 + AO353_12455 0.45 +0.0 2,739,757 - AO353_12455 0.45 -0.2 2,739,757 - AO353_12455 0.45 -0.7 2,739,913 + AO353_12455 0.64 -0.5
Or see this region's nucleotide sequence