Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_10895 and AO353_10900 are separated by 37 nucleotides AO353_10900 and AO353_10905 overlap by 8 nucleotides AO353_10905 and AO353_10910 overlap by 1 nucleotides AO353_10910 and AO353_10915 are separated by 66 nucleotides
AO353_10895: AO353_10895 - hypothetical protein, at 2,379,726 to 2,380,439
_10895
AO353_10900: AO353_10900 - hypothetical protein, at 2,380,477 to 2,381,265
_10900
AO353_10905: AO353_10905 - zinc ABC transporter ATP-binding protein, at 2,381,258 to 2,382,043
_10905
AO353_10910: AO353_10910 - Fur family transcriptional regulator, at 2,382,043 to 2,382,525
_10910
AO353_10915: AO353_10915 - ABC transporter substrate-binding protein, at 2,382,592 to 2,383,512
_10915
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2380.390 kb on - strand at 2380.600 kb on + strand, within AO353_10900 at 2380.601 kb on - strand, within AO353_10900 at 2380.601 kb on - strand, within AO353_10900 at 2380.603 kb on - strand, within AO353_10900 at 2380.603 kb on - strand, within AO353_10900 at 2380.689 kb on + strand, within AO353_10900 at 2380.689 kb on + strand, within AO353_10900 at 2380.689 kb on + strand, within AO353_10900 at 2380.689 kb on + strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.690 kb on - strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.925 kb on + strand, within AO353_10900 at 2380.926 kb on - strand, within AO353_10900 at 2380.926 kb on - strand, within AO353_10900 at 2380.926 kb on - strand, within AO353_10900 at 2380.926 kb on - strand, within AO353_10900 at 2380.926 kb on - strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.963 kb on + strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.964 kb on - strand, within AO353_10900 at 2380.966 kb on + strand, within AO353_10900 at 2380.966 kb on + strand, within AO353_10900 at 2380.967 kb on - strand, within AO353_10900 at 2380.967 kb on - strand, within AO353_10900 at 2380.967 kb on - strand, within AO353_10900 at 2380.967 kb on - strand, within AO353_10900 at 2381.168 kb on + strand, within AO353_10900 at 2381.168 kb on + strand, within AO353_10900 at 2381.246 kb on + strand at 2381.246 kb on + strand at 2381.246 kb on + strand at 2381.246 kb on + strand at 2381.246 kb on + strand at 2381.246 kb on + strand at 2381.247 kb on - strand at 2381.247 kb on - strand at 2381.247 kb on - strand at 2381.247 kb on - strand at 2381.247 kb on - strand at 2381.361 kb on + strand, within AO353_10905 at 2381.361 kb on + strand, within AO353_10905 at 2381.361 kb on + strand, within AO353_10905 at 2381.362 kb on - strand, within AO353_10905 at 2381.362 kb on - strand, within AO353_10905 at 2381.362 kb on - strand, within AO353_10905 at 2381.362 kb on - strand, within AO353_10905 at 2381.560 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.562 kb on + strand, within AO353_10905 at 2381.563 kb on - strand, within AO353_10905 at 2381.563 kb on - strand, within AO353_10905 at 2381.563 kb on - strand, within AO353_10905 at 2381.563 kb on - strand, within AO353_10905 at 2381.651 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.654 kb on + strand, within AO353_10905 at 2381.655 kb on - strand, within AO353_10905 at 2381.655 kb on - strand, within AO353_10905 at 2381.655 kb on - strand, within AO353_10905 at 2381.655 kb on - strand, within AO353_10905 at 2381.753 kb on + strand, within AO353_10905 at 2381.753 kb on + strand, within AO353_10905 at 2381.753 kb on + strand, within AO353_10905 at 2381.753 kb on + strand, within AO353_10905 at 2381.753 kb on + strand, within AO353_10905 at 2381.754 kb on - strand, within AO353_10905 at 2381.754 kb on - strand, within AO353_10905 at 2381.754 kb on - strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.827 kb on + strand, within AO353_10905 at 2381.828 kb on - strand, within AO353_10905 at 2381.828 kb on - strand, within AO353_10905 at 2381.828 kb on - strand, within AO353_10905 at 2381.829 kb on + strand, within AO353_10905 at 2381.829 kb on + strand, within AO353_10905 at 2381.829 kb on + strand, within AO353_10905 at 2381.829 kb on + strand, within AO353_10905 at 2381.830 kb on - strand, within AO353_10905 at 2381.830 kb on - strand, within AO353_10905 at 2381.830 kb on - strand, within AO353_10905 at 2381.830 kb on - strand, within AO353_10905 at 2381.830 kb on - strand, within AO353_10905 at 2381.984 kb on + strand at 2382.029 kb on + strand at 2382.029 kb on + strand at 2382.029 kb on + strand at 2382.519 kb on + strand at 2382.519 kb on + strand at 2382.519 kb on + strand at 2382.520 kb on - strand at 2382.557 kb on + strand at 2382.557 kb on + strand at 2382.558 kb on - strand at 2382.558 kb on - strand at 2382.558 kb on - strand at 2382.558 kb on - strand at 2382.576 kb on + strand at 2382.576 kb on + strand at 2382.576 kb on + strand at 2382.577 kb on - strand at 2382.577 kb on - strand at 2382.671 kb on + strand at 2382.671 kb on + strand at 2382.671 kb on + strand at 2382.671 kb on + strand at 2382.671 kb on + strand at 2382.672 kb on - strand at 2382.672 kb on - strand at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.768 kb on + strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.769 kb on - strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.772 kb on + strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.773 kb on - strand, within AO353_10915 at 2382.795 kb on - strand, within AO353_10915 at 2382.795 kb on - strand, within AO353_10915 at 2382.795 kb on - strand, within AO353_10915 at 2382.877 kb on - strand, within AO353_10915
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 2,380,390 - -1.2 2,380,600 + AO353_10900 0.16 +0.1 2,380,601 - AO353_10900 0.16 -0.8 2,380,601 - AO353_10900 0.16 -1.7 2,380,603 - AO353_10900 0.16 -0.7 2,380,603 - AO353_10900 0.16 +0.1 2,380,689 + AO353_10900 0.27 -1.3 2,380,689 + AO353_10900 0.27 -0.6 2,380,689 + AO353_10900 0.27 -0.6 2,380,689 + AO353_10900 0.27 -0.6 2,380,690 - AO353_10900 0.27 +1.0 2,380,690 - AO353_10900 0.27 -0.3 2,380,690 - AO353_10900 0.27 +1.8 2,380,690 - AO353_10900 0.27 +0.4 2,380,690 - AO353_10900 0.27 -0.7 2,380,690 - AO353_10900 0.27 -1.7 2,380,690 - AO353_10900 0.27 -1.7 2,380,925 + AO353_10900 0.57 -0.3 2,380,925 + AO353_10900 0.57 +0.8 2,380,925 + AO353_10900 0.57 -0.2 2,380,925 + AO353_10900 0.57 -0.4 2,380,925 + AO353_10900 0.57 -0.2 2,380,925 + AO353_10900 0.57 -1.0 2,380,926 - AO353_10900 0.57 -1.7 2,380,926 - AO353_10900 0.57 -0.6 2,380,926 - AO353_10900 0.57 -0.2 2,380,926 - AO353_10900 0.57 -1.7 2,380,926 - AO353_10900 0.57 -0.4 2,380,963 + AO353_10900 0.62 -2.0 2,380,963 + AO353_10900 0.62 -0.7 2,380,963 + AO353_10900 0.62 -0.4 2,380,963 + AO353_10900 0.62 -1.4 2,380,963 + AO353_10900 0.62 -1.7 2,380,963 + AO353_10900 0.62 -0.5 2,380,963 + AO353_10900 0.62 +0.8 2,380,963 + AO353_10900 0.62 -2.1 2,380,963 + AO353_10900 0.62 -0.9 2,380,963 + AO353_10900 0.62 +0.3 2,380,963 + AO353_10900 0.62 -0.6 2,380,963 + AO353_10900 0.62 +0.5 2,380,963 + AO353_10900 0.62 +1.2 2,380,963 + AO353_10900 0.62 -0.6 2,380,963 + AO353_10900 0.62 -0.6 2,380,963 + AO353_10900 0.62 -1.0 2,380,963 + AO353_10900 0.62 -0.5 2,380,963 + AO353_10900 0.62 -1.6 2,380,964 - AO353_10900 0.62 -1.7 2,380,964 - AO353_10900 0.62 -1.9 2,380,964 - AO353_10900 0.62 -0.7 2,380,964 - AO353_10900 0.62 -0.7 2,380,964 - AO353_10900 0.62 +0.0 2,380,964 - AO353_10900 0.62 -0.9 2,380,964 - AO353_10900 0.62 +0.4 2,380,964 - AO353_10900 0.62 +1.1 2,380,964 - AO353_10900 0.62 +1.0 2,380,964 - AO353_10900 0.62 -0.2 2,380,964 - AO353_10900 0.62 +1.8 2,380,964 - AO353_10900 0.62 -0.4 2,380,964 - AO353_10900 0.62 -2.2 2,380,964 - AO353_10900 0.62 -1.5 2,380,964 - AO353_10900 0.62 -0.4 2,380,964 - AO353_10900 0.62 -1.0 2,380,966 + AO353_10900 0.62 -2.6 2,380,966 + AO353_10900 0.62 -0.2 2,380,967 - AO353_10900 0.62 -3.0 2,380,967 - AO353_10900 0.62 -1.0 2,380,967 - AO353_10900 0.62 +0.8 2,380,967 - AO353_10900 0.62 -1.0 2,381,168 + AO353_10900 0.88 +0.1 2,381,168 + AO353_10900 0.88 +0.1 2,381,246 + -2.0 2,381,246 + -1.0 2,381,246 + -1.1 2,381,246 + -2.6 2,381,246 + -0.4 2,381,246 + -1.0 2,381,247 - -1.0 2,381,247 - -1.2 2,381,247 - -1.4 2,381,247 - -3.0 2,381,247 - +0.8 2,381,361 + AO353_10905 0.13 +0.4 2,381,361 + AO353_10905 0.13 +0.1 2,381,361 + AO353_10905 0.13 -0.3 2,381,362 - AO353_10905 0.13 +2.0 2,381,362 - AO353_10905 0.13 +1.6 2,381,362 - AO353_10905 0.13 +0.8 2,381,362 - AO353_10905 0.13 -0.6 2,381,560 + AO353_10905 0.38 -1.1 2,381,562 + AO353_10905 0.39 -0.2 2,381,562 + AO353_10905 0.39 -1.3 2,381,562 + AO353_10905 0.39 -1.2 2,381,562 + AO353_10905 0.39 +1.6 2,381,562 + AO353_10905 0.39 -0.2 2,381,562 + AO353_10905 0.39 -0.8 2,381,562 + AO353_10905 0.39 -1.5 2,381,562 + AO353_10905 0.39 -1.4 2,381,562 + AO353_10905 0.39 -0.4 2,381,562 + AO353_10905 0.39 +0.4 2,381,562 + AO353_10905 0.39 +1.7 2,381,562 + AO353_10905 0.39 +0.4 2,381,563 - AO353_10905 0.39 -0.9 2,381,563 - AO353_10905 0.39 +0.2 2,381,563 - AO353_10905 0.39 -1.3 2,381,563 - AO353_10905 0.39 -0.1 2,381,651 + AO353_10905 0.50 -2.2 2,381,654 + AO353_10905 0.50 -1.0 2,381,654 + AO353_10905 0.50 -0.7 2,381,654 + AO353_10905 0.50 -0.7 2,381,654 + AO353_10905 0.50 +0.1 2,381,654 + AO353_10905 0.50 -0.6 2,381,654 + AO353_10905 0.50 -2.0 2,381,655 - AO353_10905 0.51 -1.4 2,381,655 - AO353_10905 0.51 -0.6 2,381,655 - AO353_10905 0.51 -0.9 2,381,655 - AO353_10905 0.51 -1.5 2,381,753 + AO353_10905 0.63 +1.0 2,381,753 + AO353_10905 0.63 -0.6 2,381,753 + AO353_10905 0.63 -0.9 2,381,753 + AO353_10905 0.63 -2.2 2,381,753 + AO353_10905 0.63 -0.4 2,381,754 - AO353_10905 0.63 +0.4 2,381,754 - AO353_10905 0.63 -2.6 2,381,754 - AO353_10905 0.63 +2.0 2,381,827 + AO353_10905 0.72 -0.4 2,381,827 + AO353_10905 0.72 +0.4 2,381,827 + AO353_10905 0.72 -0.9 2,381,827 + AO353_10905 0.72 -1.9 2,381,827 + AO353_10905 0.72 -1.4 2,381,827 + AO353_10905 0.72 -1.8 2,381,828 - AO353_10905 0.73 -0.6 2,381,828 - AO353_10905 0.73 -0.6 2,381,828 - AO353_10905 0.73 -0.1 2,381,829 + AO353_10905 0.73 -0.5 2,381,829 + AO353_10905 0.73 -2.6 2,381,829 + AO353_10905 0.73 -2.7 2,381,829 + AO353_10905 0.73 -0.5 2,381,830 - AO353_10905 0.73 -1.9 2,381,830 - AO353_10905 0.73 +1.7 2,381,830 - AO353_10905 0.73 -0.6 2,381,830 - AO353_10905 0.73 +0.4 2,381,830 - AO353_10905 0.73 -0.6 2,381,984 + -0.6 2,382,029 + -1.6 2,382,029 + -1.5 2,382,029 + -1.5 2,382,519 + -1.9 2,382,519 + -0.7 2,382,519 + -1.2 2,382,520 - -0.5 2,382,557 + -2.0 2,382,557 + -0.9 2,382,558 - +1.1 2,382,558 - -0.5 2,382,558 - -0.7 2,382,558 - -1.3 2,382,576 + +0.2 2,382,576 + +0.7 2,382,576 + -2.8 2,382,577 - -0.4 2,382,577 - -3.4 2,382,671 + +0.6 2,382,671 + -0.4 2,382,671 + -0.9 2,382,671 + -2.6 2,382,671 + -2.0 2,382,672 - -0.2 2,382,672 - -0.4 2,382,768 + AO353_10915 0.19 -0.6 2,382,768 + AO353_10915 0.19 +0.5 2,382,768 + AO353_10915 0.19 -0.9 2,382,768 + AO353_10915 0.19 +1.1 2,382,768 + AO353_10915 0.19 -0.2 2,382,768 + AO353_10915 0.19 -0.3 2,382,768 + AO353_10915 0.19 -0.5 2,382,768 + AO353_10915 0.19 -0.4 2,382,768 + AO353_10915 0.19 -1.8 2,382,768 + AO353_10915 0.19 +0.1 2,382,768 + AO353_10915 0.19 -1.2 2,382,768 + AO353_10915 0.19 -1.1 2,382,769 - AO353_10915 0.19 -0.5 2,382,769 - AO353_10915 0.19 +0.6 2,382,769 - AO353_10915 0.19 -0.7 2,382,769 - AO353_10915 0.19 +1.5 2,382,769 - AO353_10915 0.19 -0.8 2,382,769 - AO353_10915 0.19 -1.5 2,382,769 - AO353_10915 0.19 -1.9 2,382,769 - AO353_10915 0.19 -0.2 2,382,772 + AO353_10915 0.20 -0.6 2,382,772 + AO353_10915 0.20 -0.6 2,382,772 + AO353_10915 0.20 -1.0 2,382,772 + AO353_10915 0.20 +1.4 2,382,772 + AO353_10915 0.20 -2.7 2,382,772 + AO353_10915 0.20 -0.4 2,382,772 + AO353_10915 0.20 -1.9 2,382,772 + AO353_10915 0.20 -1.5 2,382,772 + AO353_10915 0.20 -2.1 2,382,772 + AO353_10915 0.20 -0.2 2,382,772 + AO353_10915 0.20 -0.4 2,382,772 + AO353_10915 0.20 -0.9 2,382,772 + AO353_10915 0.20 -0.3 2,382,772 + AO353_10915 0.20 +0.6 2,382,772 + AO353_10915 0.20 -0.1 2,382,772 + AO353_10915 0.20 +0.2 2,382,772 + AO353_10915 0.20 -1.9 2,382,772 + AO353_10915 0.20 +1.1 2,382,772 + AO353_10915 0.20 -0.3 2,382,772 + AO353_10915 0.20 -1.8 2,382,772 + AO353_10915 0.20 -2.9 2,382,772 + AO353_10915 0.20 +1.1 2,382,773 - AO353_10915 0.20 +0.1 2,382,773 - AO353_10915 0.20 -2.5 2,382,773 - AO353_10915 0.20 -2.0 2,382,773 - AO353_10915 0.20 +0.7 2,382,773 - AO353_10915 0.20 -1.8 2,382,773 - AO353_10915 0.20 -2.2 2,382,773 - AO353_10915 0.20 -1.4 2,382,773 - AO353_10915 0.20 +0.1 2,382,773 - AO353_10915 0.20 -0.4 2,382,773 - AO353_10915 0.20 -1.3 2,382,773 - AO353_10915 0.20 -0.6 2,382,773 - AO353_10915 0.20 -0.7 2,382,773 - AO353_10915 0.20 -0.2 2,382,773 - AO353_10915 0.20 -0.5 2,382,795 - AO353_10915 0.22 -2.3 2,382,795 - AO353_10915 0.22 -2.3 2,382,795 - AO353_10915 0.22 -0.2 2,382,877 - AO353_10915 0.31 -0.6
Or see this region's nucleotide sequence