Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10475

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_10470 and AO353_10475 are separated by 39 nucleotidesAO353_10475 and AO353_10480 are separated by 20 nucleotides AO353_10470: AO353_10470 - chromosomal replication initiation protein, at 2,294,029 to 2,295,546 _10470 AO353_10475: AO353_10475 - DNA polymerase III subunit beta, at 2,295,586 to 2,296,689 _10475 AO353_10480: AO353_10480 - recombinase RecF, at 2,296,710 to 2,297,813 _10480 Position (kb) 2295 2296 2297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strandat 2296.687 kb on + strandat 2296.687 kb on + strandat 2296.687 kb on + strandat 2296.688 kb on - strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.787 kb on + strandat 2296.794 kb on + strandat 2296.869 kb on - strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.883 kb on - strand, within AO353_10480at 2296.883 kb on - strand, within AO353_10480at 2296.896 kb on + strand, within AO353_10480at 2296.897 kb on - strand, within AO353_10480at 2296.906 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
2,295,563 + -0.2
2,295,563 + -0.4
2,295,563 + +0.8
2,295,563 + -1.7
2,295,563 + +1.8
2,295,563 + -1.5
2,295,563 + +0.3
2,295,563 + +1.8
2,295,563 + -0.7
2,295,563 + +0.8
2,295,563 + +1.3
2,295,567 + +0.6
2,295,567 + -1.6
2,295,567 + -0.9
2,295,567 + -0.5
2,296,687 + -0.0
2,296,687 + +0.4
2,296,687 + +0.4
2,296,688 - -0.2
2,296,707 + +0.3
2,296,707 + -0.2
2,296,707 + -0.7
2,296,707 + -0.9
2,296,707 + -0.7
2,296,707 + +0.8
2,296,707 + -0.4
2,296,708 - -1.8
2,296,708 - -2.7
2,296,708 - -0.2
2,296,708 - -2.2
2,296,708 - -3.1
2,296,708 - -0.2
2,296,708 - +0.2
2,296,708 - -0.8
2,296,708 - -0.1
2,296,708 - -0.7
2,296,787 + -0.6
2,296,794 + +2.8
2,296,869 - AO353_10480 0.14 +0.2
2,296,882 + AO353_10480 0.16 -0.2
2,296,882 + AO353_10480 0.16 +1.6
2,296,882 + AO353_10480 0.16 -2.6
2,296,882 + AO353_10480 0.16 +0.3
2,296,882 + AO353_10480 0.16 +1.9
2,296,882 + AO353_10480 0.16 -0.2
2,296,882 + AO353_10480 0.16 +0.4
2,296,882 + AO353_10480 0.16 +1.4
2,296,883 - AO353_10480 0.16 -0.7
2,296,883 - AO353_10480 0.16 -1.3
2,296,896 + AO353_10480 0.17 -0.4
2,296,897 - AO353_10480 0.17 -1.3
2,296,906 + AO353_10480 0.18 -0.5
2,297,216 + AO353_10480 0.46 -1.3
2,297,216 + AO353_10480 0.46 +0.5
2,297,216 + AO353_10480 0.46 -0.7
2,297,216 + AO353_10480 0.46 -2.1
2,297,298 + AO353_10480 0.53 -1.5
2,297,298 + AO353_10480 0.53 +0.1
2,297,298 + AO353_10480 0.53 -1.3
2,297,298 + AO353_10480 0.53 +0.3
2,297,298 + AO353_10480 0.53 -0.9
2,297,298 + AO353_10480 0.53 +1.4
2,297,298 + AO353_10480 0.53 -0.6
2,297,300 + AO353_10480 0.53 +0.0
2,297,300 + AO353_10480 0.53 +1.7
2,297,300 + AO353_10480 0.53 -0.7
2,297,300 + AO353_10480 0.53 +1.3
2,297,369 + AO353_10480 0.60 +0.4
2,297,369 + AO353_10480 0.60 -1.2
2,297,369 + AO353_10480 0.60 +1.7
2,297,369 + AO353_10480 0.60 +1.3
2,297,369 + AO353_10480 0.60 +0.1
2,297,369 + AO353_10480 0.60 +0.5
2,297,369 + AO353_10480 0.60 -0.6
2,297,369 + AO353_10480 0.60 +1.6
2,297,369 + AO353_10480 0.60 -0.7
2,297,369 + AO353_10480 0.60 +0.1
2,297,373 + AO353_10480 0.60 +1.8
2,297,373 + AO353_10480 0.60 -0.6
2,297,373 + AO353_10480 0.60 +0.5
2,297,373 + AO353_10480 0.60 -0.9
2,297,373 + AO353_10480 0.60 -0.6
2,297,373 + AO353_10480 0.60 +0.9
2,297,373 + AO353_10480 0.60 +0.2
2,297,373 + AO353_10480 0.60 +1.2
2,297,373 + AO353_10480 0.60 +0.8
2,297,373 + AO353_10480 0.60 +0.6
2,297,606 + AO353_10480 0.81 -0.1
2,297,606 + AO353_10480 0.81 +0.3
2,297,606 + AO353_10480 0.81 -0.6
2,297,606 + AO353_10480 0.81 -0.3
2,297,606 + AO353_10480 0.81 -0.5
2,297,606 + AO353_10480 0.81 +0.1
2,297,606 + AO353_10480 0.81 +0.2
2,297,606 + AO353_10480 0.81 +0.4
2,297,606 + AO353_10480 0.81 -0.8
2,297,610 + AO353_10480 0.82 -1.0
2,297,610 + AO353_10480 0.82 +0.9
2,297,610 + AO353_10480 0.82 +1.1
2,297,610 + AO353_10480 0.82 -0.4
2,297,683 + AO353_10480 0.88 -0.4
2,297,683 + AO353_10480 0.88 -0.3
2,297,683 + AO353_10480 0.88 +0.1
2,297,683 + AO353_10480 0.88 +0.7
2,297,683 + AO353_10480 0.88 -2.1
2,297,683 + AO353_10480 0.88 -0.4
2,297,683 + AO353_10480 0.88 +0.9
2,297,683 + AO353_10480 0.88 -0.4

Or see this region's nucleotide sequence