Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10470

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10465 and AO353_10470 are separated by 716 nucleotidesAO353_10470 and AO353_10475 are separated by 39 nucleotides AO353_10465: AO353_10465 - ribonuclease P protein component, at 2,292,911 to 2,293,312 _10465 AO353_10470: AO353_10470 - chromosomal replication initiation protein, at 2,294,029 to 2,295,546 _10470 AO353_10475: AO353_10475 - DNA polymerase III subunit beta, at 2,295,586 to 2,296,689 _10475 Position (kb) 2294 2295 2296Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2293.573 kb on + strandat 2293.573 kb on + strandat 2293.573 kb on + strandat 2293.574 kb on - strandat 2293.574 kb on - strandat 2293.574 kb on - strandat 2293.574 kb on - strandat 2293.615 kb on + strandat 2293.615 kb on + strandat 2293.615 kb on + strandat 2293.615 kb on + strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.616 kb on - strandat 2293.622 kb on - strandat 2293.628 kb on - strandat 2293.641 kb on - strandat 2293.667 kb on - strandat 2293.667 kb on - strandat 2293.667 kb on - strandat 2293.673 kb on + strandat 2293.674 kb on - strandat 2293.700 kb on - strandat 2293.714 kb on + strandat 2293.715 kb on - strandat 2293.727 kb on - strandat 2293.742 kb on + strandat 2293.743 kb on - strandat 2293.743 kb on - strandat 2293.743 kb on - strandat 2293.743 kb on - strandat 2293.743 kb on - strandat 2293.848 kb on + strandat 2293.848 kb on + strandat 2293.848 kb on + strandat 2293.848 kb on + strandat 2293.848 kb on + strandat 2293.848 kb on + strandat 2293.849 kb on - strandat 2293.849 kb on - strandat 2293.859 kb on + strandat 2293.859 kb on + strandat 2293.859 kb on + strandat 2293.859 kb on + strandat 2293.860 kb on - strandat 2293.860 kb on - strandat 2293.863 kb on + strandat 2293.863 kb on + strandat 2293.909 kb on + strandat 2293.909 kb on + strandat 2293.909 kb on + strandat 2293.913 kb on + strandat 2293.913 kb on + strandat 2293.913 kb on + strandat 2293.913 kb on + strandat 2293.913 kb on + strandat 2293.915 kb on + strandat 2293.915 kb on + strandat 2293.916 kb on - strandat 2293.959 kb on + strandat 2293.959 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.563 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strandat 2295.567 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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2,293,573 + -0.7
2,293,573 + +1.1
2,293,573 + +2.9
2,293,574 - -0.1
2,293,574 - +0.4
2,293,574 - +0.3
2,293,574 - +1.4
2,293,615 + +1.2
2,293,615 + +1.1
2,293,615 + +1.3
2,293,615 + +1.9
2,293,616 - +0.1
2,293,616 - +1.1
2,293,616 - +0.6
2,293,616 - -1.9
2,293,616 - +0.4
2,293,616 - -0.1
2,293,616 - -0.6
2,293,616 - +0.6
2,293,622 - -1.0
2,293,628 - -0.3
2,293,641 - -1.1
2,293,667 - +0.1
2,293,667 - -0.4
2,293,667 - +1.0
2,293,673 + +1.4
2,293,674 - -0.4
2,293,700 - -0.9
2,293,714 + +2.6
2,293,715 - -1.6
2,293,727 - -2.1
2,293,742 + -0.7
2,293,743 - +0.1
2,293,743 - -0.4
2,293,743 - -1.2
2,293,743 - +1.6
2,293,743 - -0.7
2,293,848 + +1.2
2,293,848 + +0.1
2,293,848 + +2.2
2,293,848 + +0.3
2,293,848 + -1.0
2,293,848 + -0.6
2,293,849 - -0.9
2,293,849 - -0.9
2,293,859 + +0.5
2,293,859 + -0.2
2,293,859 + -1.6
2,293,859 + +1.8
2,293,860 - -1.5
2,293,860 - -1.5
2,293,863 + -1.2
2,293,863 + +1.1
2,293,909 + -0.7
2,293,909 + -1.1
2,293,909 + +0.1
2,293,913 + +0.2
2,293,913 + -0.6
2,293,913 + +0.7
2,293,913 + +0.8
2,293,913 + -0.0
2,293,915 + -1.7
2,293,915 + +0.7
2,293,916 - -0.7
2,293,959 + +0.8
2,293,959 + +0.3
2,295,563 + -0.2
2,295,563 + -0.4
2,295,563 + +0.8
2,295,563 + -1.7
2,295,563 + +1.8
2,295,563 + -1.5
2,295,563 + +0.3
2,295,563 + +1.8
2,295,563 + -0.7
2,295,563 + +0.8
2,295,563 + +1.3
2,295,567 + +0.6
2,295,567 + -1.6
2,295,567 + -0.9
2,295,567 + -0.5

Or see this region's nucleotide sequence