Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_10465 and AO353_10470 are separated by 716 nucleotides AO353_10470 and AO353_10475 are separated by 39 nucleotides
AO353_10465: AO353_10465 - ribonuclease P protein component, at 2,292,911 to 2,293,312
_10465
AO353_10470: AO353_10470 - chromosomal replication initiation protein, at 2,294,029 to 2,295,546
_10470
AO353_10475: AO353_10475 - DNA polymerase III subunit beta, at 2,295,586 to 2,296,689
_10475
Position (kb)
2294
2295
2296 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2293.573 kb on + strand at 2293.573 kb on + strand at 2293.573 kb on + strand at 2293.574 kb on - strand at 2293.574 kb on - strand at 2293.574 kb on - strand at 2293.574 kb on - strand at 2293.615 kb on + strand at 2293.615 kb on + strand at 2293.615 kb on + strand at 2293.615 kb on + strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.616 kb on - strand at 2293.622 kb on - strand at 2293.628 kb on - strand at 2293.641 kb on - strand at 2293.667 kb on - strand at 2293.667 kb on - strand at 2293.667 kb on - strand at 2293.673 kb on + strand at 2293.674 kb on - strand at 2293.700 kb on - strand at 2293.714 kb on + strand at 2293.715 kb on - strand at 2293.727 kb on - strand at 2293.742 kb on + strand at 2293.743 kb on - strand at 2293.743 kb on - strand at 2293.743 kb on - strand at 2293.743 kb on - strand at 2293.743 kb on - strand at 2293.848 kb on + strand at 2293.848 kb on + strand at 2293.848 kb on + strand at 2293.848 kb on + strand at 2293.848 kb on + strand at 2293.848 kb on + strand at 2293.849 kb on - strand at 2293.849 kb on - strand at 2293.859 kb on + strand at 2293.859 kb on + strand at 2293.859 kb on + strand at 2293.859 kb on + strand at 2293.860 kb on - strand at 2293.860 kb on - strand at 2293.863 kb on + strand at 2293.863 kb on + strand at 2293.909 kb on + strand at 2293.909 kb on + strand at 2293.909 kb on + strand at 2293.913 kb on + strand at 2293.913 kb on + strand at 2293.913 kb on + strand at 2293.913 kb on + strand at 2293.913 kb on + strand at 2293.915 kb on + strand at 2293.915 kb on + strand at 2293.916 kb on - strand at 2293.959 kb on + strand at 2293.959 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.563 kb on + strand at 2295.567 kb on + strand at 2295.567 kb on + strand at 2295.567 kb on + strand at 2295.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 2,293,573 + -0.7 2,293,573 + +1.1 2,293,573 + +2.9 2,293,574 - -0.1 2,293,574 - +0.4 2,293,574 - +0.3 2,293,574 - +1.4 2,293,615 + +1.2 2,293,615 + +1.1 2,293,615 + +1.3 2,293,615 + +1.9 2,293,616 - +0.1 2,293,616 - +1.1 2,293,616 - +0.6 2,293,616 - -1.9 2,293,616 - +0.4 2,293,616 - -0.1 2,293,616 - -0.6 2,293,616 - +0.6 2,293,622 - -1.0 2,293,628 - -0.3 2,293,641 - -1.1 2,293,667 - +0.1 2,293,667 - -0.4 2,293,667 - +1.0 2,293,673 + +1.4 2,293,674 - -0.4 2,293,700 - -0.9 2,293,714 + +2.6 2,293,715 - -1.6 2,293,727 - -2.1 2,293,742 + -0.7 2,293,743 - +0.1 2,293,743 - -0.4 2,293,743 - -1.2 2,293,743 - +1.6 2,293,743 - -0.7 2,293,848 + +1.2 2,293,848 + +0.1 2,293,848 + +2.2 2,293,848 + +0.3 2,293,848 + -1.0 2,293,848 + -0.6 2,293,849 - -0.9 2,293,849 - -0.9 2,293,859 + +0.5 2,293,859 + -0.2 2,293,859 + -1.6 2,293,859 + +1.8 2,293,860 - -1.5 2,293,860 - -1.5 2,293,863 + -1.2 2,293,863 + +1.1 2,293,909 + -0.7 2,293,909 + -1.1 2,293,909 + +0.1 2,293,913 + +0.2 2,293,913 + -0.6 2,293,913 + +0.7 2,293,913 + +0.8 2,293,913 + -0.0 2,293,915 + -1.7 2,293,915 + +0.7 2,293,916 - -0.7 2,293,959 + +0.8 2,293,959 + +0.3 2,295,563 + -0.2 2,295,563 + -0.4 2,295,563 + +0.8 2,295,563 + -1.7 2,295,563 + +1.8 2,295,563 + -1.5 2,295,563 + +0.3 2,295,563 + +1.8 2,295,563 + -0.7 2,295,563 + +0.8 2,295,563 + +1.3 2,295,567 + +0.6 2,295,567 + -1.6 2,295,567 + -0.9 2,295,567 + -0.5
Or see this region's nucleotide sequence