Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07050 and AO353_07055 overlap by 1 nucleotides AO353_07055 and AO353_07060 are separated by 117 nucleotides AO353_07060 and AO353_07065 are separated by 9 nucleotides AO353_07065 and AO353_07070 are separated by 45 nucleotides AO353_07070 and AO353_07075 are separated by 53 nucleotides
AO353_07050: AO353_07050 - 50S ribosomal protein L1, at 1,555,777 to 1,556,472
_07050
AO353_07055: AO353_07055 - 50S ribosomal protein L11, at 1,556,472 to 1,556,903
_07055
AO353_07060: AO353_07060 - antitermination protein NusG, at 1,557,021 to 1,557,554
_07060
AO353_07065: AO353_07065 - preprotein translocase subunit SecE, at 1,557,564 to 1,557,932
_07065
AO353_07070: AO353_07070 - tRNA-Trp, at 1,557,978 to 1,558,053
_07070
AO353_07075: AO353_07075 - elongation factor Tu, at 1,558,107 to 1,559,300
_07075
Position (kb) 1557
1558 Strain fitness (log2 ratio) -1
0
1
2
3 at 1558.109 kb on - strand at 1558.530 kb on - strand, within AO353_07075 at 1558.530 kb on - strand, within AO353_07075 at 1558.530 kb on - strand, within AO353_07075 at 1558.530 kb on - strand, within AO353_07075 at 1558.533 kb on - strand, within AO353_07075
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 1,558,109 - +1.6 1,558,530 - AO353_07075 0.35 +3.1 1,558,530 - AO353_07075 0.35 +1.1 1,558,530 - AO353_07075 0.35 +2.3 1,558,530 - AO353_07075 0.35 +2.1 1,558,533 - AO353_07075 0.36 +1.5
Or see this region's nucleotide sequence