Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05560 and AO353_05565 are separated by 26 nucleotides AO353_05565 and AO353_05570 are separated by 47 nucleotides AO353_05570 and AO353_05575 are separated by 139 nucleotides AO353_05575 and AO353_05580 are separated by 96 nucleotides AO353_05580 and AO353_05585 are separated by 22 nucleotides
AO353_05560: AO353_05560 - translation initiation factor IF-2, at 1,229,342 to 1,231,858
_05560
AO353_05565: AO353_05565 - transcription elongation factor NusA, at 1,231,885 to 1,233,366
_05565
AO353_05570: AO353_05570 - ribosome maturation protein RimP, at 1,233,414 to 1,233,872
_05570
AO353_05575: AO353_05575 - tRNA-Met, at 1,234,012 to 1,234,088
_05575
AO353_05580: AO353_05580 - tRNA-Leu, at 1,234,185 to 1,234,270
_05580
AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676
_05585
Position (kb)
1231
1232
1233
1234 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1231.884 kb on - strand at 1231.884 kb on - strand at 1231.884 kb on - strand at 1231.972 kb on - strand at 1233.432 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.904 kb on - strand at 1233.904 kb on - strand at 1233.904 kb on - strand at 1233.964 kb on - strand at 1233.966 kb on - strand at 1234.108 kb on - strand at 1234.108 kb on - strand at 1234.108 kb on - strand at 1234.110 kb on - strand at 1234.110 kb on - strand at 1234.136 kb on + strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.149 kb on - strand at 1234.149 kb on - strand at 1234.149 kb on - strand at 1234.274 kb on - strand at 1234.274 kb on - strand at 1234.274 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.295 kb on - strand at 1234.295 kb on - strand at 1234.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 1,231,884 - -2.6 1,231,884 - -1.8 1,231,884 - -1.9 1,231,972 - +1.1 1,233,432 - +1.9 1,233,893 - +1.7 1,233,893 - -0.5 1,233,893 - +1.1 1,233,893 - +0.6 1,233,893 - +1.6 1,233,893 - +2.5 1,233,893 - +0.4 1,233,893 - +4.2 1,233,893 - +1.1 1,233,893 - +2.4 1,233,904 - -0.3 1,233,904 - +1.5 1,233,904 - +0.8 1,233,964 - -0.2 1,233,966 - +0.1 1,234,108 - -0.8 1,234,108 - -1.6 1,234,108 - +0.6 1,234,110 - -0.5 1,234,110 - +0.2 1,234,136 + -1.5 1,234,137 - +2.1 1,234,137 - +0.2 1,234,137 - -2.3 1,234,137 - -0.9 1,234,137 - -1.5 1,234,137 - -1.4 1,234,137 - -1.1 1,234,149 - -1.9 1,234,149 - +0.3 1,234,149 - +0.1 1,234,274 - +0.2 1,234,274 - -0.7 1,234,274 - +2.2 1,234,277 - -0.5 1,234,277 - -0.4 1,234,277 - +0.6 1,234,277 - +0.8 1,234,277 - -0.8 1,234,277 - +1.3 1,234,277 - -0.0 1,234,295 - -0.9 1,234,295 - -0.9 1,234,295 - -0.5
Or see this region's nucleotide sequence