Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05565

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_05560 and AO353_05565 are separated by 26 nucleotidesAO353_05565 and AO353_05570 are separated by 47 nucleotidesAO353_05570 and AO353_05575 are separated by 139 nucleotidesAO353_05575 and AO353_05580 are separated by 96 nucleotidesAO353_05580 and AO353_05585 are separated by 22 nucleotides AO353_05560: AO353_05560 - translation initiation factor IF-2, at 1,229,342 to 1,231,858 _05560 AO353_05565: AO353_05565 - transcription elongation factor NusA, at 1,231,885 to 1,233,366 _05565 AO353_05570: AO353_05570 - ribosome maturation protein RimP, at 1,233,414 to 1,233,872 _05570 AO353_05575: AO353_05575 - tRNA-Met, at 1,234,012 to 1,234,088 _05575 AO353_05580: AO353_05580 - tRNA-Leu, at 1,234,185 to 1,234,270 _05580 AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676 _05585 Position (kb) 1231 1232 1233 1234Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1231.884 kb on - strandat 1231.884 kb on - strandat 1231.884 kb on - strandat 1231.972 kb on - strandat 1233.432 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.904 kb on - strandat 1233.904 kb on - strandat 1233.904 kb on - strandat 1233.964 kb on - strandat 1233.966 kb on - strandat 1234.108 kb on - strandat 1234.108 kb on - strandat 1234.108 kb on - strandat 1234.110 kb on - strandat 1234.110 kb on - strandat 1234.136 kb on + strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.149 kb on - strandat 1234.149 kb on - strandat 1234.149 kb on - strandat 1234.274 kb on - strandat 1234.274 kb on - strandat 1234.274 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.295 kb on - strandat 1234.295 kb on - strandat 1234.295 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
1,231,884 - -2.6
1,231,884 - -1.8
1,231,884 - -1.9
1,231,972 - +1.1
1,233,432 - +1.9
1,233,893 - +1.7
1,233,893 - -0.5
1,233,893 - +1.1
1,233,893 - +0.6
1,233,893 - +1.6
1,233,893 - +2.5
1,233,893 - +0.4
1,233,893 - +4.2
1,233,893 - +1.1
1,233,893 - +2.4
1,233,904 - -0.3
1,233,904 - +1.5
1,233,904 - +0.8
1,233,964 - -0.2
1,233,966 - +0.1
1,234,108 - -0.8
1,234,108 - -1.6
1,234,108 - +0.6
1,234,110 - -0.5
1,234,110 - +0.2
1,234,136 + -1.5
1,234,137 - +2.1
1,234,137 - +0.2
1,234,137 - -2.3
1,234,137 - -0.9
1,234,137 - -1.5
1,234,137 - -1.4
1,234,137 - -1.1
1,234,149 - -1.9
1,234,149 - +0.3
1,234,149 - +0.1
1,234,274 - +0.2
1,234,274 - -0.7
1,234,274 - +2.2
1,234,277 - -0.5
1,234,277 - -0.4
1,234,277 - +0.6
1,234,277 - +0.8
1,234,277 - -0.8
1,234,277 - +1.3
1,234,277 - -0.0
1,234,295 - -0.9
1,234,295 - -0.9
1,234,295 - -0.5

Or see this region's nucleotide sequence