Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04575 and AO353_04580 are separated by 87 nucleotides AO353_04580 and AO353_04585 are separated by 39 nucleotides AO353_04585 and AO353_04590 are separated by 113 nucleotides
AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304
_04575
AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712
_04580
AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222
_04585
AO353_04590: AO353_04590 - MFS transporter, at 990,336 to 991,652
_04590
Position (kb) 989
990
991 Strain fitness (log2 ratio) -2
-1
0
1
2 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.117 kb on + strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.118 kb on - strand, within AO353_04575 at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.325 kb on + strand at 989.340 kb on + strand at 989.363 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.386 kb on + strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.387 kb on - strand at 989.402 kb on - strand at 989.491 kb on - strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.510 kb on + strand, within AO353_04580 at 989.511 kb on - strand, within AO353_04580 at 989.556 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.609 kb on + strand, within AO353_04580 at 989.610 kb on - strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.639 kb on + strand, within AO353_04580 at 989.730 kb on + strand at 989.731 kb on - strand at 989.750 kb on + strand at 989.751 kb on - strand at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.975 kb on + strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 989.976 kb on - strand, within AO353_04585 at 990.141 kb on - strand, within AO353_04585 at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.185 kb on + strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.186 kb on - strand at 990.273 kb on + strand at 990.274 kb on - strand at 990.297 kb on - strand at 990.297 kb on - strand at 990.318 kb on - strand at 990.360 kb on + strand at 990.360 kb on + strand at 990.360 kb on + strand at 990.360 kb on + strand at 990.360 kb on + strand at 990.360 kb on + strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.361 kb on - strand at 990.364 kb on + strand at 990.413 kb on + strand at 990.414 kb on - strand at 990.414 kb on - strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.462 kb on + strand at 990.463 kb on - strand at 990.463 kb on - strand at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.500 kb on + strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.501 kb on - strand, within AO353_04590 at 990.503 kb on - strand, within AO353_04590 at 990.593 kb on + strand, within AO353_04590 at 990.652 kb on + strand, within AO353_04590 at 990.653 kb on - strand, within AO353_04590 at 990.857 kb on - strand, within AO353_04590 at 990.857 kb on - strand, within AO353_04590 at 990.857 kb on - strand, within AO353_04590 at 990.857 kb on - strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.883 kb on + strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 990.884 kb on - strand, within AO353_04590 at 991.111 kb on + strand, within AO353_04590 at 991.111 kb on + strand, within AO353_04590 at 991.111 kb on + strand, within AO353_04590 at 991.112 kb on - strand, within AO353_04590 at 991.112 kb on - strand, within AO353_04590 at 991.112 kb on - strand, within AO353_04590
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 988,784 + AO353_04575 0.44 -0.0 988,784 + AO353_04575 0.44 -0.5 988,784 + AO353_04575 0.44 -0.0 988,784 + AO353_04575 0.44 -1.8 988,785 - AO353_04575 0.44 -1.4 988,785 - AO353_04575 0.44 +0.7 988,785 - AO353_04575 0.44 -1.0 988,785 - AO353_04575 0.44 +2.0 989,117 + AO353_04575 0.80 -1.9 989,117 + AO353_04575 0.80 +0.4 989,117 + AO353_04575 0.80 +0.2 989,117 + AO353_04575 0.80 -0.5 989,117 + AO353_04575 0.80 +1.0 989,117 + AO353_04575 0.80 -2.4 989,117 + AO353_04575 0.80 -0.0 989,118 - AO353_04575 0.80 -0.3 989,118 - AO353_04575 0.80 +0.6 989,118 - AO353_04575 0.80 -1.7 989,118 - AO353_04575 0.80 -1.2 989,118 - AO353_04575 0.80 -0.6 989,325 + -1.9 989,325 + -0.1 989,325 + -0.8 989,325 + -0.2 989,325 + +1.4 989,325 + -0.4 989,325 + +0.5 989,325 + +0.5 989,325 + +0.1 989,325 + +0.1 989,325 + -0.8 989,325 + +0.5 989,325 + -0.0 989,340 + +1.4 989,363 + +0.7 989,386 + +1.5 989,386 + +0.3 989,386 + +1.2 989,386 + +0.4 989,386 + -0.9 989,386 + +0.7 989,386 + +0.4 989,386 + +1.3 989,386 + -2.5 989,387 - +0.7 989,387 - +1.0 989,387 - +0.4 989,387 - +1.3 989,387 - +0.4 989,387 - -0.3 989,402 - +0.3 989,491 - AO353_04580 0.31 +0.4 989,510 + AO353_04580 0.37 -0.0 989,510 + AO353_04580 0.37 -0.1 989,510 + AO353_04580 0.37 +0.5 989,510 + AO353_04580 0.37 +1.1 989,510 + AO353_04580 0.37 +0.3 989,511 - AO353_04580 0.37 +1.1 989,556 + AO353_04580 0.51 +0.3 989,609 + AO353_04580 0.68 +1.6 989,609 + AO353_04580 0.68 -0.6 989,610 - AO353_04580 0.68 +0.8 989,639 + AO353_04580 0.77 -0.1 989,639 + AO353_04580 0.77 -0.2 989,639 + AO353_04580 0.77 +0.5 989,730 + +1.0 989,731 - -0.4 989,750 + -0.1 989,751 - -1.2 989,975 + AO353_04585 0.47 +0.4 989,975 + AO353_04585 0.47 +1.3 989,975 + AO353_04585 0.47 +0.4 989,975 + AO353_04585 0.47 +1.7 989,975 + AO353_04585 0.47 +0.3 989,975 + AO353_04585 0.47 -0.0 989,975 + AO353_04585 0.47 +1.5 989,976 - AO353_04585 0.48 +0.5 989,976 - AO353_04585 0.48 -0.8 989,976 - AO353_04585 0.48 +0.1 989,976 - AO353_04585 0.48 -1.8 990,141 - AO353_04585 0.83 -0.8 990,185 + -2.2 990,185 + +0.6 990,185 + -0.5 990,185 + +0.4 990,185 + -0.3 990,185 + +0.7 990,185 + -0.0 990,186 - +0.6 990,186 - -0.7 990,186 - -0.8 990,186 - +1.0 990,273 + -0.6 990,274 - +1.8 990,297 - -0.5 990,297 - +0.7 990,318 - -0.4 990,360 + +0.8 990,360 + +1.4 990,360 + -0.4 990,360 + +1.4 990,360 + +0.2 990,360 + -0.1 990,361 - -1.2 990,361 - -0.9 990,361 - -1.6 990,361 - +1.0 990,361 - -1.2 990,361 - -0.3 990,361 - -1.4 990,364 + -0.0 990,413 + +1.1 990,414 - +0.1 990,414 - +1.0 990,462 + -0.2 990,462 + +1.0 990,462 + +0.9 990,462 + -1.8 990,462 + -1.1 990,462 + +0.6 990,462 + +0.0 990,463 - -1.5 990,463 - -1.2 990,500 + AO353_04590 0.12 +0.9 990,500 + AO353_04590 0.12 +0.8 990,500 + AO353_04590 0.12 +0.4 990,500 + AO353_04590 0.12 +1.2 990,500 + AO353_04590 0.12 +0.7 990,500 + AO353_04590 0.12 +1.2 990,500 + AO353_04590 0.12 -1.5 990,500 + AO353_04590 0.12 -0.0 990,500 + AO353_04590 0.12 +0.4 990,500 + AO353_04590 0.12 -0.2 990,500 + AO353_04590 0.12 +0.4 990,500 + AO353_04590 0.12 -0.0 990,500 + AO353_04590 0.12 -1.8 990,500 + AO353_04590 0.12 -1.8 990,501 - AO353_04590 0.13 -0.0 990,501 - AO353_04590 0.13 -0.4 990,501 - AO353_04590 0.13 -0.0 990,501 - AO353_04590 0.13 +0.5 990,501 - AO353_04590 0.13 -1.0 990,501 - AO353_04590 0.13 -0.3 990,501 - AO353_04590 0.13 +0.4 990,501 - AO353_04590 0.13 -0.7 990,501 - AO353_04590 0.13 +0.2 990,501 - AO353_04590 0.13 +0.4 990,501 - AO353_04590 0.13 +0.2 990,501 - AO353_04590 0.13 -0.4 990,503 - AO353_04590 0.13 +0.6 990,593 + AO353_04590 0.20 -1.9 990,652 + AO353_04590 0.24 +1.5 990,653 - AO353_04590 0.24 +0.4 990,857 - AO353_04590 0.40 -1.0 990,857 - AO353_04590 0.40 -0.0 990,857 - AO353_04590 0.40 -1.1 990,857 - AO353_04590 0.40 -0.0 990,883 + AO353_04590 0.42 +1.0 990,883 + AO353_04590 0.42 +0.5 990,883 + AO353_04590 0.42 -0.4 990,883 + AO353_04590 0.42 -0.4 990,883 + AO353_04590 0.42 -0.4 990,883 + AO353_04590 0.42 +0.2 990,883 + AO353_04590 0.42 -0.7 990,883 + AO353_04590 0.42 +0.2 990,883 + AO353_04590 0.42 +0.1 990,883 + AO353_04590 0.42 -2.0 990,883 + AO353_04590 0.42 -1.2 990,884 - AO353_04590 0.42 -0.2 990,884 - AO353_04590 0.42 +0.2 990,884 - AO353_04590 0.42 -0.4 990,884 - AO353_04590 0.42 -1.1 990,884 - AO353_04590 0.42 +0.1 990,884 - AO353_04590 0.42 +0.2 990,884 - AO353_04590 0.42 -1.2 990,884 - AO353_04590 0.42 -1.0 990,884 - AO353_04590 0.42 -1.9 990,884 - AO353_04590 0.42 -0.7 990,884 - AO353_04590 0.42 +0.3 991,111 + AO353_04590 0.59 +1.1 991,111 + AO353_04590 0.59 -0.0 991,111 + AO353_04590 0.59 -0.7 991,112 - AO353_04590 0.59 +0.6 991,112 - AO353_04590 0.59 -2.0 991,112 - AO353_04590 0.59 +0.2
Or see this region's nucleotide sequence