Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04535 and AO353_04540 are separated by 60 nucleotides AO353_04540 and AO353_04545 are separated by 7 nucleotides AO353_04545 and AO353_04550 are separated by 219 nucleotides
AO353_04535: AO353_04535 - aminopeptidase, at 979,283 to 980,773
_04535
AO353_04540: AO353_04540 - DNA polymerase III subunit chi, at 980,834 to 981,262
_04540
AO353_04545: AO353_04545 - DNA polymerase III subunit chi, at 981,270 to 981,692
_04545
AO353_04550: AO353_04550 - valine--tRNA ligase, at 981,912 to 984,758
_04550
Position (kb) 980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 979.864 kb on + strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.982 kb on + strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.364 kb on - strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.852 kb on + strand at 980.853 kb on - strand at 980.939 kb on + strand, within AO353_04540 at 980.939 kb on + strand, within AO353_04540 at 980.940 kb on - strand, within AO353_04540 at 981.051 kb on + strand, within AO353_04540 at 981.249 kb on + strand at 981.249 kb on + strand at 981.681 kb on + strand at 981.723 kb on + strand at 981.723 kb on + strand at 981.724 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.863 kb on + strand at 981.865 kb on + strand at 981.865 kb on + strand at 981.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 979,864 + AO353_04535 0.39 +0.0 979,865 - AO353_04535 0.39 +0.2 979,865 - AO353_04535 0.39 +0.5 979,982 + AO353_04535 0.47 -1.5 979,983 - AO353_04535 0.47 +1.2 979,983 - AO353_04535 0.47 -0.0 980,033 + AO353_04535 0.50 -0.2 980,033 + AO353_04535 0.50 -1.5 980,063 + AO353_04535 0.52 -1.7 980,063 + AO353_04535 0.52 +0.9 980,063 + AO353_04535 0.52 +1.8 980,063 + AO353_04535 0.52 +0.2 980,064 - AO353_04535 0.52 -0.0 980,064 - AO353_04535 0.52 -1.6 980,064 - AO353_04535 0.52 +1.4 980,064 - AO353_04535 0.52 -0.0 980,064 - AO353_04535 0.52 +0.7 980,064 - AO353_04535 0.52 +0.1 980,106 + AO353_04535 0.55 -0.0 980,106 + AO353_04535 0.55 -0.2 980,106 + AO353_04535 0.55 +0.8 980,107 - AO353_04535 0.55 -0.6 980,107 - AO353_04535 0.55 +0.5 980,107 - AO353_04535 0.55 +0.8 980,107 - AO353_04535 0.55 -1.9 980,107 - AO353_04535 0.55 +1.2 980,144 + AO353_04535 0.58 -2.2 980,144 + AO353_04535 0.58 +0.6 980,144 + AO353_04535 0.58 -2.9 980,144 + AO353_04535 0.58 -1.8 980,145 - AO353_04535 0.58 -0.2 980,145 - AO353_04535 0.58 -0.0 980,287 + AO353_04535 0.67 -0.5 980,287 + AO353_04535 0.67 -1.4 980,287 + AO353_04535 0.67 +0.3 980,287 + AO353_04535 0.67 +0.2 980,363 + AO353_04535 0.72 +0.2 980,363 + AO353_04535 0.72 -0.5 980,364 - AO353_04535 0.73 +0.4 980,546 + AO353_04535 0.85 -0.0 980,546 + AO353_04535 0.85 -1.0 980,546 + AO353_04535 0.85 +0.4 980,852 + +0.2 980,853 - +0.7 980,939 + AO353_04540 0.24 -0.8 980,939 + AO353_04540 0.24 +0.8 980,940 - AO353_04540 0.25 +0.3 981,051 + AO353_04540 0.51 -1.0 981,249 + +0.6 981,249 + -2.0 981,681 + -0.0 981,723 + +0.4 981,723 + +0.4 981,724 - -0.3 981,730 - -0.2 981,730 - -0.6 981,730 - -0.3 981,739 + -1.6 981,739 + +0.4 981,739 + -1.9 981,740 - +0.4 981,740 - -2.2 981,863 + -0.3 981,865 + -2.5 981,865 + -2.5 981,886 + -0.6
Or see this region's nucleotide sequence