Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03920 and AO353_03925 are separated by 5 nucleotides AO353_03925 and AO353_03930 are separated by 174 nucleotides AO353_03930 and AO353_03935 are separated by 58 nucleotides AO353_03935 and AO353_03940 are separated by 565 nucleotides
AO353_03920: AO353_03920 - acetyltransferase, at 838,955 to 839,356
_03920
AO353_03925: AO353_03925 - lysine transporter LysE, at 839,362 to 839,964
_03925
AO353_03930: AO353_03930 - superoxide dismutase, at 840,139 to 840,735
_03930
AO353_03935: AO353_03935 - fructose-bisphosphate aldolase, at 840,794 to 841,087
_03935
AO353_03940: AO353_03940 - hypothetical protein, at 841,653 to 842,597
_03940
Position (kb) 840
841 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 839.153 kb on + strand, within AO353_03920 at 839.153 kb on + strand, within AO353_03920 at 839.153 kb on + strand, within AO353_03920 at 839.154 kb on - strand, within AO353_03920 at 839.154 kb on - strand, within AO353_03920 at 839.273 kb on + strand, within AO353_03920 at 839.274 kb on - strand, within AO353_03920 at 839.355 kb on - strand at 839.355 kb on - strand at 839.355 kb on - strand at 839.355 kb on - strand at 839.355 kb on - strand at 839.361 kb on + strand at 839.361 kb on + strand at 839.361 kb on + strand at 839.361 kb on + strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.362 kb on - strand at 839.374 kb on + strand at 839.375 kb on - strand at 839.375 kb on - strand at 839.375 kb on - strand at 839.375 kb on - strand at 839.375 kb on - strand at 839.737 kb on + strand, within AO353_03925 at 839.737 kb on + strand, within AO353_03925 at 839.737 kb on + strand, within AO353_03925 at 839.737 kb on + strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.738 kb on - strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.966 kb on + strand at 839.966 kb on + strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.990 kb on + strand at 839.990 kb on + strand at 839.991 kb on - strand at 839.991 kb on - strand at 840.015 kb on - strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.034 kb on - strand at 840.034 kb on - strand at 840.034 kb on - strand at 840.061 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.734 kb on - strand at 840.734 kb on - strand at 840.734 kb on - strand at 840.778 kb on + strand at 840.909 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand at 840.945 kb on + strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.962 kb on - strand, within AO353_03935 at 841.029 kb on + strand, within AO353_03935 at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.088 kb on - strand at 841.088 kb on - strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.108 kb on + strand at 841.121 kb on - strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.261 kb on + strand at 841.262 kb on - strand at 841.268 kb on + strand at 841.269 kb on - strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.281 kb on + strand at 841.282 kb on - strand at 841.282 kb on - strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.345 kb on + strand at 841.346 kb on - strand at 841.358 kb on + strand at 841.359 kb on - strand at 841.379 kb on - strand at 841.379 kb on - strand at 841.440 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.543 kb on - strand at 841.543 kb on - strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.552 kb on - strand at 841.552 kb on - strand at 841.595 kb on - strand at 841.635 kb on + strand at 841.635 kb on + strand at 841.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 839,153 + AO353_03920 0.49 +0.8 839,153 + AO353_03920 0.49 -1.6 839,153 + AO353_03920 0.49 +1.7 839,154 - AO353_03920 0.50 -0.4 839,154 - AO353_03920 0.50 -0.1 839,273 + AO353_03920 0.79 -1.1 839,274 - AO353_03920 0.79 +0.2 839,355 - -0.2 839,355 - -1.1 839,355 - -0.6 839,355 - -0.2 839,355 - -1.0 839,361 + +0.1 839,361 + -0.2 839,361 + -0.8 839,361 + -0.9 839,362 - -1.0 839,362 - -0.4 839,362 - +0.7 839,362 - +1.2 839,362 - +0.2 839,362 - +2.3 839,362 - -0.4 839,362 - -0.5 839,362 - +0.4 839,374 + +1.0 839,375 - +0.4 839,375 - +0.4 839,375 - +1.4 839,375 - -0.6 839,375 - +0.9 839,737 + AO353_03925 0.62 +0.7 839,737 + AO353_03925 0.62 +0.1 839,737 + AO353_03925 0.62 +0.6 839,737 + AO353_03925 0.62 -1.0 839,738 - AO353_03925 0.62 -0.2 839,738 - AO353_03925 0.62 -1.8 839,738 - AO353_03925 0.62 -0.6 839,738 - AO353_03925 0.62 -1.6 839,738 - AO353_03925 0.62 +0.9 839,738 - AO353_03925 0.62 -1.5 839,797 + AO353_03925 0.72 +0.5 839,797 + AO353_03925 0.72 +0.2 839,797 + AO353_03925 0.72 +1.5 839,797 + AO353_03925 0.72 -1.4 839,797 + AO353_03925 0.72 -1.6 839,798 - AO353_03925 0.72 +0.3 839,798 - AO353_03925 0.72 -1.2 839,798 - AO353_03925 0.72 -1.6 839,798 - AO353_03925 0.72 +0.3 839,798 - AO353_03925 0.72 -0.6 839,798 - AO353_03925 0.72 +0.5 839,798 - AO353_03925 0.72 -0.4 839,798 - AO353_03925 0.72 -1.5 839,801 + AO353_03925 0.73 +0.8 839,801 + AO353_03925 0.73 +0.5 839,801 + AO353_03925 0.73 +1.4 839,801 + AO353_03925 0.73 +0.1 839,801 + AO353_03925 0.73 -1.1 839,802 - AO353_03925 0.73 -0.9 839,802 - AO353_03925 0.73 +0.1 839,802 - AO353_03925 0.73 +0.2 839,966 + -0.8 839,966 + -1.1 839,970 - -0.6 839,970 - -0.9 839,970 - +1.7 839,970 - -0.1 839,970 - -1.9 839,990 + +0.2 839,990 + +1.3 839,991 - -0.5 839,991 - -0.3 840,015 - +4.0 840,033 + -0.1 840,033 + -0.4 840,033 + +0.5 840,033 + +0.0 840,034 - +2.4 840,034 - +2.8 840,034 - +1.1 840,061 + -1.7 840,733 + +0.4 840,733 + +0.0 840,733 + +1.3 840,733 + +1.2 840,734 - +1.8 840,734 - -1.0 840,734 - +1.1 840,778 + +2.4 840,909 + AO353_03935 0.39 +1.7 840,945 + AO353_03935 0.51 +0.4 840,945 + AO353_03935 0.51 +0.4 840,945 + AO353_03935 0.51 -0.2 840,945 + AO353_03935 0.51 +0.8 840,945 + -0.1 840,945 + AO353_03935 0.51 -1.1 840,946 - AO353_03935 0.52 -0.4 840,946 - AO353_03935 0.52 -0.6 840,946 - AO353_03935 0.52 +0.8 840,962 - AO353_03935 0.57 -2.0 841,029 + AO353_03935 0.80 +0.0 841,087 + +0.6 841,087 + -1.5 841,087 + +0.9 841,087 + -1.4 841,087 + -1.4 841,088 - +0.1 841,088 - -1.2 841,091 + -1.1 841,091 + +0.5 841,091 + -0.4 841,091 + -0.5 841,091 + +1.4 841,091 + -1.5 841,091 + -2.4 841,091 + -0.2 841,092 - +0.1 841,092 - +0.5 841,092 - +0.1 841,092 - +0.8 841,092 - +0.0 841,092 - -0.4 841,108 + -0.1 841,121 - -1.4 841,152 + -0.1 841,152 + +0.6 841,152 + +1.6 841,152 + +0.8 841,153 - -0.8 841,153 - -1.4 841,153 - -0.2 841,153 - +0.9 841,153 - -1.5 841,153 - -0.4 841,153 - +0.4 841,153 - +0.1 841,153 - +1.1 841,156 + -0.1 841,156 + -0.1 841,156 + -1.6 841,156 + -0.2 841,156 + -0.2 841,156 + +0.9 841,156 + +0.4 841,156 + +0.7 841,156 + -0.1 841,156 + -0.2 841,156 + -1.3 841,156 + +0.4 841,157 - -0.6 841,157 - -0.3 841,157 - +1.5 841,157 - -0.9 841,157 - -0.2 841,157 - -0.2 841,157 - -0.5 841,157 - -0.8 841,157 - +0.6 841,157 - +0.5 841,157 - -0.5 841,157 - -0.5 841,157 - +0.2 841,157 - -0.8 841,157 - -1.1 841,157 - -0.4 841,157 - -0.1 841,157 - -0.1 841,157 - -0.6 841,157 - -0.4 841,157 - +0.4 841,157 - +0.5 841,157 - -0.4 841,157 - -0.1 841,157 - +0.3 841,157 - -0.6 841,227 + +1.9 841,227 + -0.1 841,227 + +0.9 841,227 + -1.1 841,261 + +0.5 841,262 - +0.3 841,268 + -1.5 841,269 - +0.9 841,276 + +1.4 841,276 + -1.7 841,276 + -1.1 841,276 + +1.0 841,276 + +0.2 841,276 + -2.0 841,276 + +0.1 841,276 + +0.9 841,276 + +0.3 841,276 + -1.2 841,277 - +1.5 841,277 - +0.2 841,277 - -0.6 841,277 - +0.8 841,277 - -0.9 841,277 - +0.6 841,277 - -0.1 841,281 + -0.6 841,282 - -0.6 841,282 - -0.4 841,284 + -0.6 841,284 + -0.6 841,284 + +0.6 841,284 + +0.4 841,284 + +1.9 841,284 + +1.0 841,284 + -0.6 841,285 - +0.9 841,285 - -1.5 841,285 - +0.6 841,285 - +0.3 841,285 - -0.1 841,285 - +0.2 841,285 - -0.8 841,285 - +1.9 841,285 - +0.5 841,285 - -1.4 841,285 - +1.3 841,285 - -0.4 841,285 - +0.5 841,290 + -0.8 841,290 + +0.2 841,290 + -0.1 841,290 + -0.1 841,291 - -1.1 841,291 - -0.3 841,291 - -0.4 841,291 - -1.6 841,345 + -0.4 841,346 - -1.2 841,358 + -0.4 841,359 - +0.6 841,379 - +0.9 841,379 - -1.4 841,440 + -1.1 841,542 + -0.4 841,542 + -0.9 841,542 + +0.3 841,542 + +0.9 841,542 + +1.5 841,542 + -0.3 841,543 - +0.3 841,543 - -0.1 841,548 + -1.0 841,548 + -0.6 841,548 + -0.9 841,548 + -0.9 841,548 + -1.9 841,548 + -0.2 841,549 - +1.7 841,549 - -0.2 841,549 - +0.9 841,549 - -0.1 841,552 - +0.4 841,552 - +2.1 841,595 - +0.4 841,635 + +0.4 841,635 + +0.4 841,636 - +1.2
Or see this region's nucleotide sequence