Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03755 and AO353_03760 are separated by 22 nucleotides AO353_03760 and AO353_03765 are separated by 253 nucleotides AO353_03765 and AO353_03770 are separated by 127 nucleotides AO353_03770 and AO353_03775 are separated by 245 nucleotides
AO353_03755: AO353_03755 - hypothetical protein, at 803,567 to 803,956
_03755
AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338
_03760
AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966
_03765
AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393
_03770
AO353_03775: AO353_03775 - pyruvate kinase, at 805,639 to 807,090
_03775
Position (kb) 804
805 Strain fitness (log2 ratio) -2
-1
0
1
2 at 803.598 kb on - strand at 803.616 kb on - strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.673 kb on - strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.772 kb on - strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.954 kb on + strand at 803.954 kb on + strand at 803.954 kb on + strand at 803.967 kb on + strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.981 kb on - strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.082 kb on + strand, within AO353_03760 at 804.082 kb on + strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.354 kb on + strand at 804.354 kb on + strand at 804.354 kb on + strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.382 kb on - strand at 804.382 kb on - strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.394 kb on - strand at 804.394 kb on - strand at 804.478 kb on + strand at 804.488 kb on + strand at 804.489 kb on - strand at 804.489 kb on - strand at 804.502 kb on + strand at 804.503 kb on - strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.524 kb on - strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.687 kb on - strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 805.077 kb on - strand at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.276 kb on + strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.367 kb on - strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.467 kb on - strand at 805.467 kb on - strand at 805.473 kb on + strand at 805.506 kb on + strand at 805.507 kb on - strand at 805.547 kb on - strand at 805.566 kb on - strand at 805.566 kb on - strand at 805.585 kb on + strand at 805.585 kb on + strand at 805.586 kb on - strand at 805.586 kb on - strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.603 kb on + strand at 805.603 kb on + strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.653 kb on + strand at 805.686 kb on + strand at 805.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 803,598 - -0.6 803,616 - AO353_03755 0.13 -1.8 803,672 + AO353_03755 0.27 -0.2 803,672 + AO353_03755 0.27 +0.3 803,673 - AO353_03755 0.27 -1.7 803,705 + AO353_03755 0.35 +0.6 803,705 + AO353_03755 0.35 -0.6 803,705 + AO353_03755 0.35 -1.5 803,706 - AO353_03755 0.36 +1.7 803,706 - AO353_03755 0.36 +0.3 803,706 - AO353_03755 0.36 -0.1 803,706 - AO353_03755 0.36 +0.5 803,706 - AO353_03755 0.36 +0.1 803,706 - AO353_03755 0.36 -1.5 803,771 + AO353_03755 0.52 -0.5 803,771 + AO353_03755 0.52 -0.4 803,772 - AO353_03755 0.53 +0.9 803,777 + AO353_03755 0.54 -0.9 803,777 + AO353_03755 0.54 -0.7 803,777 + AO353_03755 0.54 -0.1 803,778 - AO353_03755 0.54 +0.4 803,778 - AO353_03755 0.54 -1.5 803,778 - AO353_03755 0.54 -2.1 803,778 - AO353_03755 0.54 -0.9 803,954 + +0.3 803,954 + +0.3 803,954 + -1.0 803,967 + -0.4 803,968 - +0.7 803,968 - -0.3 803,968 - +1.3 803,968 - -0.1 803,968 - +0.3 803,968 - -1.7 803,981 - +1.4 804,013 + +1.3 804,013 + +0.9 804,013 + -1.7 804,013 + -0.1 804,013 + +1.5 804,014 - +0.7 804,014 - -0.1 804,014 - -2.0 804,082 + AO353_03760 0.29 +0.5 804,082 + AO353_03760 0.29 +0.3 804,083 - AO353_03760 0.29 +0.3 804,083 - AO353_03760 0.29 -0.8 804,083 - AO353_03760 0.29 +0.6 804,218 + AO353_03760 0.66 -0.6 804,218 + AO353_03760 0.66 +0.9 804,218 + AO353_03760 0.66 +0.6 804,219 - AO353_03760 0.67 -0.2 804,219 - AO353_03760 0.67 -1.1 804,354 + -2.0 804,354 + +1.4 804,354 + +1.1 804,355 - +0.5 804,355 - -1.1 804,355 - +1.3 804,375 + +0.6 804,375 + +1.1 804,375 + +1.4 804,375 + -0.2 804,375 + -0.7 804,376 - -1.4 804,376 - +0.3 804,376 - -0.3 804,381 + +0.3 804,381 + +0.8 804,381 + -1.1 804,381 + -1.2 804,381 + -0.2 804,381 + -0.2 804,382 - -0.6 804,382 - +0.0 804,393 + -0.7 804,393 + -0.7 804,393 + -0.9 804,394 - -2.6 804,394 - +0.3 804,478 + +0.2 804,488 + -1.2 804,489 - +1.5 804,489 - -0.9 804,502 + +0.9 804,503 - +0.0 804,523 + -0.4 804,523 + -0.3 804,523 + -0.3 804,523 + +1.3 804,523 + -2.0 804,523 + +0.3 804,524 - -1.1 804,541 + +0.9 804,541 + +0.0 804,541 + -0.9 804,541 + -1.7 804,541 + -0.0 804,542 - +0.1 804,542 - -0.4 804,542 - -0.1 804,542 - -1.0 804,542 - -0.5 804,593 + +0.7 804,593 + -0.1 804,593 + +0.3 804,594 - -0.4 804,594 - +0.5 804,594 - -0.8 804,687 - AO353_03765 0.25 +0.2 804,722 + AO353_03765 0.35 -0.7 804,722 + AO353_03765 0.35 -0.4 804,722 + AO353_03765 0.35 +2.1 804,722 + AO353_03765 0.35 +0.3 804,722 + AO353_03765 0.35 +0.5 804,722 + AO353_03765 0.35 -0.7 804,723 - AO353_03765 0.35 -0.4 804,723 - AO353_03765 0.35 -0.1 804,743 + AO353_03765 0.40 +1.2 804,743 + AO353_03765 0.40 +0.5 804,743 + AO353_03765 0.40 +2.5 804,743 + AO353_03765 0.40 +0.6 804,743 + AO353_03765 0.40 -0.4 804,744 - AO353_03765 0.41 +1.9 804,744 - AO353_03765 0.41 -0.8 804,744 - AO353_03765 0.41 +0.6 804,744 - AO353_03765 0.41 -0.7 804,796 + AO353_03765 0.54 -1.5 804,796 + AO353_03765 0.54 -0.9 804,796 + AO353_03765 0.54 -0.8 804,796 + AO353_03765 0.54 +0.8 804,796 + AO353_03765 0.54 -1.1 804,796 + AO353_03765 0.54 -1.1 804,796 + -0.7 804,796 + AO353_03765 0.54 -1.5 804,796 + AO353_03765 0.54 -2.7 804,796 + AO353_03765 0.54 +0.5 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 -0.0 804,796 + AO353_03765 0.54 +0.6 804,796 + AO353_03765 0.54 -1.1 804,796 + AO353_03765 0.54 -0.9 804,796 + AO353_03765 0.54 +0.7 804,797 - AO353_03765 0.55 -0.3 804,797 - AO353_03765 0.55 -1.5 804,797 - AO353_03765 0.55 -0.4 804,797 - AO353_03765 0.55 -0.1 804,797 - AO353_03765 0.55 -1.4 804,797 - AO353_03765 0.55 +1.6 804,797 - AO353_03765 0.55 +0.3 804,797 - AO353_03765 0.55 -1.2 804,797 - AO353_03765 0.55 +0.2 804,797 - AO353_03765 0.55 +0.5 804,797 - AO353_03765 0.55 +0.6 804,797 - AO353_03765 0.55 -0.9 804,797 - AO353_03765 0.55 -1.5 804,798 + AO353_03765 0.55 +2.2 804,798 + AO353_03765 0.55 +0.7 804,798 + AO353_03765 0.55 +0.2 804,798 + AO353_03765 0.55 -0.1 804,798 + AO353_03765 0.55 -1.8 804,798 + AO353_03765 0.55 +0.5 804,798 + AO353_03765 0.55 +0.6 804,799 - AO353_03765 0.55 -1.5 804,799 - AO353_03765 0.55 -0.5 804,799 - AO353_03765 0.55 +0.5 804,799 - AO353_03765 0.55 -0.9 804,799 - AO353_03765 0.55 -1.2 804,799 - AO353_03765 0.55 +0.4 804,800 + AO353_03765 0.55 -1.1 804,800 + AO353_03765 0.55 -1.4 804,801 - AO353_03765 0.56 -2.1 804,801 - AO353_03765 0.56 -2.3 804,801 - AO353_03765 0.56 -0.3 804,872 + AO353_03765 0.75 -0.1 804,872 + AO353_03765 0.75 +0.1 805,077 - +0.3 805,168 + AO353_03770 0.25 -0.3 805,168 + AO353_03770 0.25 -2.0 805,168 + AO353_03770 0.25 -0.2 805,169 - AO353_03770 0.25 +2.3 805,169 - AO353_03770 0.25 +0.4 805,169 - AO353_03770 0.25 -0.2 805,169 - AO353_03770 0.25 -0.2 805,276 + AO353_03770 0.61 +0.1 805,277 - AO353_03770 0.61 +0.9 805,277 - AO353_03770 0.61 -0.8 805,277 - AO353_03770 0.61 -2.3 805,277 - AO353_03770 0.61 -0.6 805,280 - AO353_03770 0.62 +0.4 805,280 - AO353_03770 0.62 -0.1 805,367 - -0.5 805,466 + -2.2 805,466 + +0.9 805,466 + -0.4 805,466 + +0.3 805,467 - -0.7 805,467 - -1.2 805,473 + -1.2 805,506 + -0.5 805,507 - -1.4 805,547 - -1.2 805,566 - +0.2 805,566 - +0.3 805,585 + -2.3 805,585 + -0.7 805,586 - -0.1 805,586 - -0.9 805,600 + -1.5 805,600 + -1.4 805,600 + +0.6 805,600 + -0.7 805,600 + +0.9 805,600 + +1.1 805,600 + -0.4 805,600 + -1.1 805,600 + -0.7 805,600 + -2.2 805,600 + -2.2 805,600 + -0.3 805,601 - -0.4 805,601 - -0.7 805,601 - -0.5 805,601 - -0.4 805,601 - -0.9 805,601 - +0.8 805,603 + -0.7 805,603 + +0.7 805,604 - +0.3 805,604 - +1.1 805,604 - -1.5 805,604 - +1.2 805,604 - -0.2 805,604 - -0.2 805,604 - +0.1 805,653 + -0.4 805,686 + -1.4 805,687 - -1.7
Or see this region's nucleotide sequence