Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03765

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03755 and AO353_03760 are separated by 22 nucleotidesAO353_03760 and AO353_03765 are separated by 253 nucleotidesAO353_03765 and AO353_03770 are separated by 127 nucleotidesAO353_03770 and AO353_03775 are separated by 245 nucleotides AO353_03755: AO353_03755 - hypothetical protein, at 803,567 to 803,956 _03755 AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338 _03760 AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966 _03765 AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393 _03770 AO353_03775: AO353_03775 - pyruvate kinase, at 805,639 to 807,090 _03775 Position (kb) 804 805Strain fitness (log2 ratio) -2 -1 0 1 2at 803.598 kb on - strandat 803.616 kb on - strand, within AO353_03755at 803.672 kb on + strand, within AO353_03755at 803.672 kb on + strand, within AO353_03755at 803.673 kb on - strand, within AO353_03755at 803.705 kb on + strand, within AO353_03755at 803.705 kb on + strand, within AO353_03755at 803.705 kb on + strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.706 kb on - strand, within AO353_03755at 803.771 kb on + strand, within AO353_03755at 803.771 kb on + strand, within AO353_03755at 803.772 kb on - strand, within AO353_03755at 803.777 kb on + strand, within AO353_03755at 803.777 kb on + strand, within AO353_03755at 803.777 kb on + strand, within AO353_03755at 803.778 kb on - strand, within AO353_03755at 803.778 kb on - strand, within AO353_03755at 803.778 kb on - strand, within AO353_03755at 803.778 kb on - strand, within AO353_03755at 803.954 kb on + strandat 803.954 kb on + strandat 803.954 kb on + strandat 803.967 kb on + strandat 803.968 kb on - strandat 803.968 kb on - strandat 803.968 kb on - strandat 803.968 kb on - strandat 803.968 kb on - strandat 803.968 kb on - strandat 803.981 kb on - strandat 804.013 kb on + strandat 804.013 kb on + strandat 804.013 kb on + strandat 804.013 kb on + strandat 804.013 kb on + strandat 804.014 kb on - strandat 804.014 kb on - strandat 804.014 kb on - strandat 804.082 kb on + strand, within AO353_03760at 804.082 kb on + strand, within AO353_03760at 804.083 kb on - strand, within AO353_03760at 804.083 kb on - strand, within AO353_03760at 804.083 kb on - strand, within AO353_03760at 804.218 kb on + strand, within AO353_03760at 804.218 kb on + strand, within AO353_03760at 804.218 kb on + strand, within AO353_03760at 804.219 kb on - strand, within AO353_03760at 804.219 kb on - strand, within AO353_03760at 804.354 kb on + strandat 804.354 kb on + strandat 804.354 kb on + strandat 804.355 kb on - strandat 804.355 kb on - strandat 804.355 kb on - strandat 804.375 kb on + strandat 804.375 kb on + strandat 804.375 kb on + strandat 804.375 kb on + strandat 804.375 kb on + strandat 804.376 kb on - strandat 804.376 kb on - strandat 804.376 kb on - strandat 804.381 kb on + strandat 804.381 kb on + strandat 804.381 kb on + strandat 804.381 kb on + strandat 804.381 kb on + strandat 804.381 kb on + strandat 804.382 kb on - strandat 804.382 kb on - strandat 804.393 kb on + strandat 804.393 kb on + strandat 804.393 kb on + strandat 804.394 kb on - strandat 804.394 kb on - strandat 804.478 kb on + strandat 804.488 kb on + strandat 804.489 kb on - strandat 804.489 kb on - strandat 804.502 kb on + strandat 804.503 kb on - strandat 804.523 kb on + strandat 804.523 kb on + strandat 804.523 kb on + strandat 804.523 kb on + strandat 804.523 kb on + strandat 804.523 kb on + strandat 804.524 kb on - strandat 804.541 kb on + strandat 804.541 kb on + strandat 804.541 kb on + strandat 804.541 kb on + strandat 804.541 kb on + strandat 804.542 kb on - strandat 804.542 kb on - strandat 804.542 kb on - strandat 804.542 kb on - strandat 804.542 kb on - strandat 804.593 kb on + strandat 804.593 kb on + strandat 804.593 kb on + strandat 804.594 kb on - strandat 804.594 kb on - strandat 804.594 kb on - strandat 804.687 kb on - strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.723 kb on - strand, within AO353_03765at 804.723 kb on - strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strandat 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.800 kb on + strand, within AO353_03765at 804.800 kb on + strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.872 kb on + strand, within AO353_03765at 804.872 kb on + strand, within AO353_03765at 805.077 kb on - strandat 805.168 kb on + strand, within AO353_03770at 805.168 kb on + strand, within AO353_03770at 805.168 kb on + strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.276 kb on + strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.280 kb on - strand, within AO353_03770at 805.280 kb on - strand, within AO353_03770at 805.367 kb on - strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.467 kb on - strandat 805.467 kb on - strandat 805.473 kb on + strandat 805.506 kb on + strandat 805.507 kb on - strandat 805.547 kb on - strandat 805.566 kb on - strandat 805.566 kb on - strandat 805.585 kb on + strandat 805.585 kb on + strandat 805.586 kb on - strandat 805.586 kb on - strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.603 kb on + strandat 805.603 kb on + strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.653 kb on + strandat 805.686 kb on + strandat 805.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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803,598 - -0.6
803,616 - AO353_03755 0.13 -1.8
803,672 + AO353_03755 0.27 -0.2
803,672 + AO353_03755 0.27 +0.3
803,673 - AO353_03755 0.27 -1.7
803,705 + AO353_03755 0.35 +0.6
803,705 + AO353_03755 0.35 -0.6
803,705 + AO353_03755 0.35 -1.5
803,706 - AO353_03755 0.36 +1.7
803,706 - AO353_03755 0.36 +0.3
803,706 - AO353_03755 0.36 -0.1
803,706 - AO353_03755 0.36 +0.5
803,706 - AO353_03755 0.36 +0.1
803,706 - AO353_03755 0.36 -1.5
803,771 + AO353_03755 0.52 -0.5
803,771 + AO353_03755 0.52 -0.4
803,772 - AO353_03755 0.53 +0.9
803,777 + AO353_03755 0.54 -0.9
803,777 + AO353_03755 0.54 -0.7
803,777 + AO353_03755 0.54 -0.1
803,778 - AO353_03755 0.54 +0.4
803,778 - AO353_03755 0.54 -1.5
803,778 - AO353_03755 0.54 -2.1
803,778 - AO353_03755 0.54 -0.9
803,954 + +0.3
803,954 + +0.3
803,954 + -1.0
803,967 + -0.4
803,968 - +0.7
803,968 - -0.3
803,968 - +1.3
803,968 - -0.1
803,968 - +0.3
803,968 - -1.7
803,981 - +1.4
804,013 + +1.3
804,013 + +0.9
804,013 + -1.7
804,013 + -0.1
804,013 + +1.5
804,014 - +0.7
804,014 - -0.1
804,014 - -2.0
804,082 + AO353_03760 0.29 +0.5
804,082 + AO353_03760 0.29 +0.3
804,083 - AO353_03760 0.29 +0.3
804,083 - AO353_03760 0.29 -0.8
804,083 - AO353_03760 0.29 +0.6
804,218 + AO353_03760 0.66 -0.6
804,218 + AO353_03760 0.66 +0.9
804,218 + AO353_03760 0.66 +0.6
804,219 - AO353_03760 0.67 -0.2
804,219 - AO353_03760 0.67 -1.1
804,354 + -2.0
804,354 + +1.4
804,354 + +1.1
804,355 - +0.5
804,355 - -1.1
804,355 - +1.3
804,375 + +0.6
804,375 + +1.1
804,375 + +1.4
804,375 + -0.2
804,375 + -0.7
804,376 - -1.4
804,376 - +0.3
804,376 - -0.3
804,381 + +0.3
804,381 + +0.8
804,381 + -1.1
804,381 + -1.2
804,381 + -0.2
804,381 + -0.2
804,382 - -0.6
804,382 - +0.0
804,393 + -0.7
804,393 + -0.7
804,393 + -0.9
804,394 - -2.6
804,394 - +0.3
804,478 + +0.2
804,488 + -1.2
804,489 - +1.5
804,489 - -0.9
804,502 + +0.9
804,503 - +0.0
804,523 + -0.4
804,523 + -0.3
804,523 + -0.3
804,523 + +1.3
804,523 + -2.0
804,523 + +0.3
804,524 - -1.1
804,541 + +0.9
804,541 + +0.0
804,541 + -0.9
804,541 + -1.7
804,541 + -0.0
804,542 - +0.1
804,542 - -0.4
804,542 - -0.1
804,542 - -1.0
804,542 - -0.5
804,593 + +0.7
804,593 + -0.1
804,593 + +0.3
804,594 - -0.4
804,594 - +0.5
804,594 - -0.8
804,687 - AO353_03765 0.25 +0.2
804,722 + AO353_03765 0.35 -0.7
804,722 + AO353_03765 0.35 -0.4
804,722 + AO353_03765 0.35 +2.1
804,722 + AO353_03765 0.35 +0.3
804,722 + AO353_03765 0.35 +0.5
804,722 + AO353_03765 0.35 -0.7
804,723 - AO353_03765 0.35 -0.4
804,723 - AO353_03765 0.35 -0.1
804,743 + AO353_03765 0.40 +1.2
804,743 + AO353_03765 0.40 +0.5
804,743 + AO353_03765 0.40 +2.5
804,743 + AO353_03765 0.40 +0.6
804,743 + AO353_03765 0.40 -0.4
804,744 - AO353_03765 0.41 +1.9
804,744 - AO353_03765 0.41 -0.8
804,744 - AO353_03765 0.41 +0.6
804,744 - AO353_03765 0.41 -0.7
804,796 + AO353_03765 0.54 -1.5
804,796 + AO353_03765 0.54 -0.9
804,796 + AO353_03765 0.54 -0.8
804,796 + AO353_03765 0.54 +0.8
804,796 + AO353_03765 0.54 -1.1
804,796 + AO353_03765 0.54 -1.1
804,796 + -0.7
804,796 + AO353_03765 0.54 -1.5
804,796 + AO353_03765 0.54 -2.7
804,796 + AO353_03765 0.54 +0.5
804,796 + AO353_03765 0.54 -0.3
804,796 + AO353_03765 0.54 -0.0
804,796 + AO353_03765 0.54 +0.6
804,796 + AO353_03765 0.54 -1.1
804,796 + AO353_03765 0.54 -0.9
804,796 + AO353_03765 0.54 +0.7
804,797 - AO353_03765 0.55 -0.3
804,797 - AO353_03765 0.55 -1.5
804,797 - AO353_03765 0.55 -0.4
804,797 - AO353_03765 0.55 -0.1
804,797 - AO353_03765 0.55 -1.4
804,797 - AO353_03765 0.55 +1.6
804,797 - AO353_03765 0.55 +0.3
804,797 - AO353_03765 0.55 -1.2
804,797 - AO353_03765 0.55 +0.2
804,797 - AO353_03765 0.55 +0.5
804,797 - AO353_03765 0.55 +0.6
804,797 - AO353_03765 0.55 -0.9
804,797 - AO353_03765 0.55 -1.5
804,798 + AO353_03765 0.55 +2.2
804,798 + AO353_03765 0.55 +0.7
804,798 + AO353_03765 0.55 +0.2
804,798 + AO353_03765 0.55 -0.1
804,798 + AO353_03765 0.55 -1.8
804,798 + AO353_03765 0.55 +0.5
804,798 + AO353_03765 0.55 +0.6
804,799 - AO353_03765 0.55 -1.5
804,799 - AO353_03765 0.55 -0.5
804,799 - AO353_03765 0.55 +0.5
804,799 - AO353_03765 0.55 -0.9
804,799 - AO353_03765 0.55 -1.2
804,799 - AO353_03765 0.55 +0.4
804,800 + AO353_03765 0.55 -1.1
804,800 + AO353_03765 0.55 -1.4
804,801 - AO353_03765 0.56 -2.1
804,801 - AO353_03765 0.56 -2.3
804,801 - AO353_03765 0.56 -0.3
804,872 + AO353_03765 0.75 -0.1
804,872 + AO353_03765 0.75 +0.1
805,077 - +0.3
805,168 + AO353_03770 0.25 -0.3
805,168 + AO353_03770 0.25 -2.0
805,168 + AO353_03770 0.25 -0.2
805,169 - AO353_03770 0.25 +2.3
805,169 - AO353_03770 0.25 +0.4
805,169 - AO353_03770 0.25 -0.2
805,169 - AO353_03770 0.25 -0.2
805,276 + AO353_03770 0.61 +0.1
805,277 - AO353_03770 0.61 +0.9
805,277 - AO353_03770 0.61 -0.8
805,277 - AO353_03770 0.61 -2.3
805,277 - AO353_03770 0.61 -0.6
805,280 - AO353_03770 0.62 +0.4
805,280 - AO353_03770 0.62 -0.1
805,367 - -0.5
805,466 + -2.2
805,466 + +0.9
805,466 + -0.4
805,466 + +0.3
805,467 - -0.7
805,467 - -1.2
805,473 + -1.2
805,506 + -0.5
805,507 - -1.4
805,547 - -1.2
805,566 - +0.2
805,566 - +0.3
805,585 + -2.3
805,585 + -0.7
805,586 - -0.1
805,586 - -0.9
805,600 + -1.5
805,600 + -1.4
805,600 + +0.6
805,600 + -0.7
805,600 + +0.9
805,600 + +1.1
805,600 + -0.4
805,600 + -1.1
805,600 + -0.7
805,600 + -2.2
805,600 + -2.2
805,600 + -0.3
805,601 - -0.4
805,601 - -0.7
805,601 - -0.5
805,601 - -0.4
805,601 - -0.9
805,601 - +0.8
805,603 + -0.7
805,603 + +0.7
805,604 - +0.3
805,604 - +1.1
805,604 - -1.5
805,604 - +1.2
805,604 - -0.2
805,604 - -0.2
805,604 - +0.1
805,653 + -0.4
805,686 + -1.4
805,687 - -1.7

Or see this region's nucleotide sequence