Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03715

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03710 and AO353_03715 are separated by 340 nucleotidesAO353_03715 and AO353_03720 are separated by 100 nucleotides AO353_03710: AO353_03710 - formyltetrahydrofolate deformylase, at 793,032 to 793,880 _03710 AO353_03715: AO353_03715 - H-NS histone, at 794,221 to 794,595 _03715 AO353_03720: AO353_03720 - exonuclease I, at 794,696 to 796,123 _03720 Position (kb) 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 793.369 kb on + strand, within AO353_03710at 793.370 kb on - strand, within AO353_03710at 793.370 kb on - strand, within AO353_03710at 793.472 kb on - strand, within AO353_03710at 793.612 kb on - strand, within AO353_03710at 793.612 kb on - strand, within AO353_03710at 793.826 kb on + strandat 793.835 kb on + strandat 793.920 kb on - strandat 793.965 kb on + strandat 794.014 kb on + strandat 794.014 kb on + strandat 794.014 kb on + strandat 794.015 kb on - strandat 794.015 kb on - strandat 794.020 kb on - strandat 794.031 kb on - strandat 794.031 kb on - strandat 794.052 kb on + strandat 794.052 kb on + strandat 794.052 kb on + strandat 794.124 kb on - strandat 794.147 kb on + strandat 794.168 kb on + strandat 794.171 kb on + strandat 794.172 kb on - strandat 794.184 kb on + strandat 794.184 kb on + strandat 794.208 kb on + strandat 794.208 kb on + strandat 794.208 kb on + strandat 794.208 kb on + strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.209 kb on - strandat 794.213 kb on + strandat 794.214 kb on - strandat 794.259 kb on + strand, within AO353_03715at 794.259 kb on + strand, within AO353_03715at 794.412 kb on + strand, within AO353_03715at 794.473 kb on + strand, within AO353_03715at 794.679 kb on + strandat 794.679 kb on + strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.680 kb on - strandat 794.685 kb on + strandat 794.685 kb on + strandat 794.686 kb on - strandat 794.686 kb on - strandat 794.717 kb on + strandat 794.718 kb on - strandat 794.730 kb on + strandat 794.731 kb on - strandat 794.751 kb on - strandat 794.751 kb on - strandat 794.751 kb on - strandat 794.751 kb on - strandat 794.770 kb on + strandat 794.770 kb on + strandat 794.777 kb on - strandat 794.777 kb on - strandat 794.804 kb on - strandat 794.804 kb on - strandat 794.912 kb on - strand, within AO353_03720at 794.930 kb on + strand, within AO353_03720at 794.933 kb on + strand, within AO353_03720at 794.933 kb on + strand, within AO353_03720at 794.933 kb on + strand, within AO353_03720at 794.978 kb on + strand, within AO353_03720at 795.048 kb on + strand, within AO353_03720at 795.048 kb on + strand, within AO353_03720at 795.048 kb on + strand, within AO353_03720at 795.048 kb on + strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.049 kb on - strand, within AO353_03720at 795.050 kb on + strand, within AO353_03720at 795.050 kb on + strand, within AO353_03720at 795.050 kb on + strand, within AO353_03720at 795.050 kb on + strand, within AO353_03720at 795.050 kb on + strand, within AO353_03720at 795.051 kb on - strand, within AO353_03720at 795.051 kb on - strand, within AO353_03720at 795.051 kb on - strand, within AO353_03720at 795.051 kb on - strand, within AO353_03720at 795.051 kb on - strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.096 kb on + strand, within AO353_03720at 795.097 kb on - strand, within AO353_03720at 795.097 kb on - strand, within AO353_03720at 795.112 kb on + strand, within AO353_03720at 795.113 kb on - strand, within AO353_03720at 795.122 kb on + strand, within AO353_03720at 795.122 kb on + strand, within AO353_03720at 795.122 kb on + strand, within AO353_03720at 795.122 kb on + strand, within AO353_03720at 795.123 kb on - strand, within AO353_03720at 795.123 kb on - strand, within AO353_03720at 795.123 kb on - strand, within AO353_03720at 795.140 kb on + strand, within AO353_03720at 795.141 kb on - strand, within AO353_03720at 795.163 kb on - strand, within AO353_03720at 795.163 kb on - strand, within AO353_03720at 795.163 kb on - strand, within AO353_03720at 795.269 kb on + strand, within AO353_03720at 795.303 kb on + strand, within AO353_03720at 795.303 kb on + strand, within AO353_03720at 795.303 kb on + strand, within AO353_03720at 795.304 kb on - strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.429 kb on + strand, within AO353_03720at 795.430 kb on - strand, within AO353_03720at 795.430 kb on - strand, within AO353_03720at 795.430 kb on - strand, within AO353_03720at 795.430 kb on - strand, within AO353_03720at 795.430 kb on - strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.460 kb on + strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.461 kb on - strand, within AO353_03720at 795.534 kb on + strand, within AO353_03720at 795.535 kb on - strand, within AO353_03720at 795.535 kb on - strand, within AO353_03720at 795.535 kb on - strand, within AO353_03720at 795.535 kb on - strand, within AO353_03720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
793,369 + AO353_03710 0.40 +0.2
793,370 - AO353_03710 0.40 -0.4
793,370 - AO353_03710 0.40 -0.4
793,472 - AO353_03710 0.52 +0.3
793,612 - AO353_03710 0.68 +0.1
793,612 - AO353_03710 0.68 -0.1
793,826 + -0.7
793,835 + +0.9
793,920 - -0.9
793,965 + +0.9
794,014 + -0.9
794,014 + -0.6
794,014 + +0.4
794,015 - -1.1
794,015 - -0.8
794,020 - -2.0
794,031 - -0.7
794,031 - +0.3
794,052 + +1.2
794,052 + -0.7
794,052 + -0.5
794,124 - -1.7
794,147 + +0.6
794,168 + -1.4
794,171 + -3.3
794,172 - -0.4
794,184 + -1.5
794,184 + -2.0
794,208 + -1.3
794,208 + +1.5
794,208 + -0.9
794,208 + -2.1
794,209 - -1.5
794,209 - -2.4
794,209 - -1.4
794,209 - -1.2
794,209 - -1.4
794,209 - -0.1
794,209 - -2.4
794,213 + -1.7
794,214 - -2.7
794,259 + AO353_03715 0.10 -1.7
794,259 + AO353_03715 0.10 -0.9
794,412 + AO353_03715 0.51 -2.2
794,473 + AO353_03715 0.67 -1.6
794,679 + +0.6
794,679 + -1.9
794,680 - -1.5
794,680 - +0.2
794,680 - +2.6
794,680 - +1.7
794,680 - +2.3
794,680 - +0.3
794,680 - +0.9
794,680 - +0.7
794,680 - +1.7
794,685 + -0.2
794,685 + -1.5
794,686 - +1.9
794,686 - +0.9
794,717 + -0.2
794,718 - -0.2
794,730 + -2.2
794,731 - +0.9
794,751 - +0.1
794,751 - +2.5
794,751 - +2.6
794,751 - -1.1
794,770 + -0.7
794,770 + -0.9
794,777 - +0.8
794,777 - -1.2
794,804 - +1.4
794,804 - -1.9
794,912 - AO353_03720 0.15 +0.5
794,930 + AO353_03720 0.16 -1.2
794,933 + AO353_03720 0.17 -0.1
794,933 + AO353_03720 0.17 -1.5
794,933 + AO353_03720 0.17 -1.2
794,978 + AO353_03720 0.20 -0.7
795,048 + AO353_03720 0.25 -2.2
795,048 + AO353_03720 0.25 +0.7
795,048 + AO353_03720 0.25 -1.4
795,048 + AO353_03720 0.25 -2.2
795,049 - AO353_03720 0.25 +0.9
795,049 - AO353_03720 0.25 +1.2
795,049 - AO353_03720 0.25 +0.7
795,049 - AO353_03720 0.25 -1.7
795,049 - AO353_03720 0.25 -0.2
795,049 - AO353_03720 0.25 -0.5
795,050 + AO353_03720 0.25 -2.2
795,050 + AO353_03720 0.25 -0.5
795,050 + AO353_03720 0.25 +0.5
795,050 + AO353_03720 0.25 -1.7
795,050 + AO353_03720 0.25 -0.4
795,051 - AO353_03720 0.25 +0.0
795,051 - AO353_03720 0.25 -0.7
795,051 - AO353_03720 0.25 -1.0
795,051 - AO353_03720 0.25 -1.2
795,051 - AO353_03720 0.25 -0.9
795,096 + AO353_03720 0.28 -1.2
795,096 + AO353_03720 0.28 -1.5
795,096 + AO353_03720 0.28 -1.1
795,096 + AO353_03720 0.28 -0.9
795,096 + AO353_03720 0.28 -1.7
795,096 + AO353_03720 0.28 -1.2
795,096 + AO353_03720 0.28 -0.4
795,097 - AO353_03720 0.28 -0.9
795,097 - AO353_03720 0.28 -1.1
795,112 + AO353_03720 0.29 -1.2
795,113 - AO353_03720 0.29 -0.3
795,122 + AO353_03720 0.30 -0.4
795,122 + AO353_03720 0.30 -1.5
795,122 + AO353_03720 0.30 -0.7
795,122 + AO353_03720 0.30 -1.5
795,123 - AO353_03720 0.30 -1.5
795,123 - AO353_03720 0.30 -1.1
795,123 - AO353_03720 0.30 +0.2
795,140 + AO353_03720 0.31 -1.2
795,141 - AO353_03720 0.31 +1.9
795,163 - AO353_03720 0.33 -1.8
795,163 - AO353_03720 0.33 +1.9
795,163 - AO353_03720 0.33 -0.4
795,269 + AO353_03720 0.40 -0.4
795,303 + AO353_03720 0.43 -1.2
795,303 + AO353_03720 0.43 -1.2
795,303 + AO353_03720 0.43 -0.2
795,304 - AO353_03720 0.43 -0.9
795,429 + AO353_03720 0.51 -0.7
795,429 + AO353_03720 0.51 -0.5
795,429 + AO353_03720 0.51 -0.3
795,429 + AO353_03720 0.51 -1.7
795,429 + AO353_03720 0.51 -1.2
795,429 + AO353_03720 0.51 -0.3
795,430 - AO353_03720 0.51 +0.1
795,430 - AO353_03720 0.51 -0.3
795,430 - AO353_03720 0.51 +2.4
795,430 - AO353_03720 0.51 -0.2
795,430 - AO353_03720 0.51 +0.9
795,460 + AO353_03720 0.54 +1.2
795,460 + AO353_03720 0.54 -0.4
795,460 + AO353_03720 0.54 -1.8
795,460 + AO353_03720 0.54 -2.0
795,460 + AO353_03720 0.54 -2.5
795,460 + AO353_03720 0.54 +0.7
795,460 + AO353_03720 0.54 -2.0
795,461 - AO353_03720 0.54 +2.3
795,461 - AO353_03720 0.54 +0.7
795,461 - AO353_03720 0.54 -0.7
795,461 - AO353_03720 0.54 +0.2
795,461 - AO353_03720 0.54 +0.2
795,461 - AO353_03720 0.54 -0.9
795,461 - AO353_03720 0.54 +1.9
795,461 - AO353_03720 0.54 -1.6
795,461 - AO353_03720 0.54 -1.2
795,461 - AO353_03720 0.54 +0.9
795,461 - AO353_03720 0.54 -0.9
795,534 + AO353_03720 0.59 -1.8
795,535 - AO353_03720 0.59 +1.2
795,535 - AO353_03720 0.59 +0.9
795,535 - AO353_03720 0.59 -0.4
795,535 - AO353_03720 0.59 -1.4

Or see this region's nucleotide sequence