Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03685 and AO353_03690 are separated by 174 nucleotides AO353_03690 and AO353_03695 are separated by 4 nucleotides AO353_03695 and AO353_03700 overlap by 4 nucleotides
AO353_03685: AO353_03685 - chemotaxis protein, at 787,628 to 789,517
_03685
AO353_03690: AO353_03690 - glycoside hydrolase, at 789,692 to 790,801
_03690
AO353_03695: AO353_03695 - deacetylase, at 790,806 to 791,570
_03695
AO353_03700: AO353_03700 - hypothetical protein, at 791,567 to 792,562
_03700
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.502 kb on + strand at 789.502 kb on + strand at 789.503 kb on - strand at 789.503 kb on - strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.637 kb on + strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.638 kb on - strand at 789.646 kb on + strand at 789.646 kb on + strand at 789.646 kb on + strand at 789.647 kb on - strand at 789.675 kb on + strand at 789.675 kb on + strand at 789.675 kb on + strand at 789.676 kb on - strand at 789.697 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.719 kb on + strand at 789.720 kb on - strand at 789.720 kb on - strand at 789.720 kb on - strand at 789.720 kb on - strand at 789.749 kb on + strand at 789.749 kb on + strand at 789.750 kb on - strand at 789.750 kb on - strand at 789.750 kb on - strand at 789.750 kb on - strand at 789.782 kb on - strand at 789.782 kb on - strand at 789.845 kb on + strand, within AO353_03690 at 789.845 kb on + strand, within AO353_03690 at 789.846 kb on - strand, within AO353_03690 at 789.846 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.917 kb on - strand, within AO353_03690 at 789.948 kb on + strand, within AO353_03690 at 789.948 kb on + strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.949 kb on - strand, within AO353_03690 at 789.965 kb on + strand, within AO353_03690 at 789.966 kb on - strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.028 kb on + strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.029 kb on - strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.097 kb on + strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.098 kb on - strand, within AO353_03690 at 790.112 kb on + strand, within AO353_03690 at 790.113 kb on - strand, within AO353_03690 at 790.293 kb on + strand, within AO353_03690 at 790.294 kb on - strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.608 kb on + strand, within AO353_03690 at 790.609 kb on - strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.624 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.672 kb on + strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.673 kb on - strand, within AO353_03690 at 790.689 kb on - strand, within AO353_03690 at 790.715 kb on + strand at 790.715 kb on + strand at 790.715 kb on + strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.716 kb on - strand at 790.754 kb on + strand at 790.755 kb on - strand at 790.757 kb on + strand at 790.757 kb on + strand at 790.758 kb on - strand at 790.758 kb on - strand at 790.758 kb on - strand at 790.866 kb on + strand at 791.028 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.031 kb on + strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand, within AO353_03695 at 791.032 kb on - strand at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.092 kb on - strand, within AO353_03695 at 791.112 kb on + strand, within AO353_03695 at 791.112 kb on + strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.113 kb on - strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.262 kb on + strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.263 kb on - strand, within AO353_03695 at 791.428 kb on + strand, within AO353_03695 at 791.429 kb on - strand, within AO353_03695 at 791.429 kb on - strand, within AO353_03695 at 791.466 kb on + strand, within AO353_03695 at 791.466 kb on + strand, within AO353_03695 at 791.558 kb on + strand at 791.559 kb on - strand at 791.622 kb on + strand at 791.623 kb on - strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.643 kb on + strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.727 kb on + strand, within AO353_03700
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 789,502 + +0.5 789,502 + -0.2 789,503 - +0.5 789,503 - +0.1 789,637 + -1.1 789,637 + -0.0 789,637 + -2.2 789,637 + -1.5 789,637 + -0.9 789,637 + +0.9 789,637 + -0.2 789,637 + -1.0 789,637 + +0.0 789,637 + -1.1 789,637 + -1.2 789,637 + -0.9 789,637 + +0.4 789,637 + +0.2 789,637 + -0.9 789,637 + -0.3 789,637 + +1.9 789,637 + +0.3 789,637 + -0.1 789,637 + +1.0 789,637 + +0.3 789,638 - -0.7 789,638 - +1.1 789,638 - -1.2 789,638 - -2.2 789,638 - -0.3 789,638 - +0.3 789,638 - +0.3 789,646 + -0.4 789,646 + -0.7 789,646 + -1.1 789,647 - +0.9 789,675 + +0.6 789,675 + +0.9 789,675 + -2.7 789,676 - -0.9 789,697 + -0.4 789,719 + +0.7 789,719 + -2.5 789,719 + -0.5 789,719 + -0.3 789,719 + +0.8 789,719 + +0.1 789,719 + -0.7 789,720 - -0.5 789,720 - -0.4 789,720 - +1.3 789,720 - +1.0 789,749 + -0.5 789,749 + -0.1 789,750 - -2.0 789,750 - -0.2 789,750 - -3.5 789,750 - -1.7 789,782 - -1.3 789,782 - -0.8 789,845 + AO353_03690 0.14 -1.2 789,845 + AO353_03690 0.14 +0.8 789,846 - AO353_03690 0.14 -1.3 789,846 - AO353_03690 0.14 -0.1 789,917 - AO353_03690 0.20 -0.0 789,917 - AO353_03690 0.20 -1.2 789,917 - AO353_03690 0.20 -0.6 789,948 + AO353_03690 0.23 -0.1 789,948 + AO353_03690 0.23 +1.2 789,949 - AO353_03690 0.23 -0.7 789,949 - AO353_03690 0.23 +0.3 789,949 - AO353_03690 0.23 -0.3 789,949 - AO353_03690 0.23 -0.7 789,965 + AO353_03690 0.25 -1.0 789,966 - AO353_03690 0.25 -0.4 790,028 + AO353_03690 0.30 +1.1 790,028 + AO353_03690 0.30 -1.7 790,028 + AO353_03690 0.30 +0.1 790,028 + AO353_03690 0.30 +1.7 790,028 + AO353_03690 0.30 -0.3 790,028 + AO353_03690 0.30 -0.9 790,029 - AO353_03690 0.30 -0.3 790,029 - AO353_03690 0.30 -1.9 790,029 - AO353_03690 0.30 -1.9 790,097 + AO353_03690 0.36 -0.6 790,097 + AO353_03690 0.36 -0.4 790,097 + AO353_03690 0.36 +0.7 790,097 + AO353_03690 0.36 -0.5 790,097 + AO353_03690 0.36 -1.0 790,097 + AO353_03690 0.36 -1.4 790,097 + AO353_03690 0.36 -1.0 790,097 + AO353_03690 0.36 -0.2 790,097 + AO353_03690 0.36 +0.5 790,097 + AO353_03690 0.36 +0.9 790,098 - AO353_03690 0.37 -2.5 790,098 - AO353_03690 0.37 -0.7 790,098 - AO353_03690 0.37 -0.9 790,098 - AO353_03690 0.37 -0.5 790,098 - AO353_03690 0.37 -1.9 790,098 - AO353_03690 0.37 -1.1 790,098 - AO353_03690 0.37 -1.4 790,098 - AO353_03690 0.37 +0.3 790,098 - AO353_03690 0.37 +1.1 790,098 - AO353_03690 0.37 -0.1 790,098 - AO353_03690 0.37 -2.1 790,098 - AO353_03690 0.37 -1.4 790,112 + AO353_03690 0.38 +0.2 790,113 - AO353_03690 0.38 +0.4 790,293 + AO353_03690 0.54 -0.0 790,294 - AO353_03690 0.54 -0.5 790,608 + AO353_03690 0.83 -0.9 790,608 + AO353_03690 0.83 +0.1 790,608 + AO353_03690 0.83 -1.1 790,609 - AO353_03690 0.83 -0.5 790,624 + AO353_03690 0.84 -0.1 790,624 + AO353_03690 0.84 +1.9 790,624 + AO353_03690 0.84 -0.2 790,624 + AO353_03690 0.84 +0.9 790,672 + AO353_03690 0.88 +0.0 790,672 + AO353_03690 0.88 -2.5 790,672 + AO353_03690 0.88 +0.1 790,672 + AO353_03690 0.88 -1.1 790,672 + AO353_03690 0.88 -0.2 790,672 + AO353_03690 0.88 +0.6 790,672 + AO353_03690 0.88 +0.2 790,673 - AO353_03690 0.88 -0.4 790,673 - AO353_03690 0.88 -2.0 790,673 - AO353_03690 0.88 +0.3 790,673 - AO353_03690 0.88 -1.5 790,673 - AO353_03690 0.88 -0.5 790,673 - AO353_03690 0.88 -1.2 790,673 - AO353_03690 0.88 -1.0 790,673 - AO353_03690 0.88 -1.5 790,689 - AO353_03690 0.90 -0.7 790,715 + -1.0 790,715 + +0.1 790,715 + -0.4 790,716 - -0.3 790,716 - -1.2 790,716 - -0.5 790,716 - -1.7 790,716 - -2.2 790,754 + -2.1 790,755 - -0.6 790,757 + -0.9 790,757 + -0.4 790,758 - +0.6 790,758 - -0.8 790,758 - +0.9 790,866 + +0.6 791,028 + AO353_03695 0.29 -0.7 791,031 + AO353_03695 0.29 +0.2 791,031 + AO353_03695 0.29 -0.9 791,031 + AO353_03695 0.29 +0.3 791,031 + AO353_03695 0.29 -1.3 791,031 + AO353_03695 0.29 +0.3 791,032 - AO353_03695 0.30 -0.1 791,032 - AO353_03695 0.30 +0.2 791,032 - AO353_03695 0.30 -2.4 791,032 - AO353_03695 0.30 -1.4 791,032 - AO353_03695 0.30 -1.5 791,032 - +1.9 791,092 - AO353_03695 0.37 -1.1 791,092 - AO353_03695 0.37 -0.6 791,092 - AO353_03695 0.37 -0.8 791,092 - AO353_03695 0.37 -0.1 791,092 - AO353_03695 0.37 -1.8 791,092 - AO353_03695 0.37 -2.0 791,112 + AO353_03695 0.40 -0.1 791,112 + AO353_03695 0.40 -1.5 791,113 - AO353_03695 0.40 -1.4 791,113 - AO353_03695 0.40 -1.4 791,113 - AO353_03695 0.40 -0.3 791,113 - AO353_03695 0.40 +0.9 791,113 - AO353_03695 0.40 -0.3 791,113 - AO353_03695 0.40 -0.8 791,262 + AO353_03695 0.60 +1.7 791,262 + AO353_03695 0.60 -1.7 791,262 + AO353_03695 0.60 -0.1 791,263 - AO353_03695 0.60 -1.3 791,263 - AO353_03695 0.60 -1.1 791,263 - AO353_03695 0.60 -2.0 791,428 + AO353_03695 0.81 -1.2 791,429 - AO353_03695 0.81 -0.9 791,429 - AO353_03695 0.81 +0.9 791,466 + AO353_03695 0.86 -0.2 791,466 + AO353_03695 0.86 -0.1 791,558 + -0.4 791,559 - -0.2 791,622 + +0.6 791,623 - -1.9 791,643 + -0.1 791,643 + -1.4 791,643 + +0.8 791,643 + -2.1 791,643 + -0.1 791,644 - -1.5 791,644 - -0.4 791,644 - -0.4 791,644 - -0.2 791,727 + AO353_03700 0.16 -0.7
Or see this region's nucleotide sequence