Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03660 and AO353_03665 overlap by 4 nucleotides AO353_03665 and AO353_03670 are separated by 96 nucleotides AO353_03670 and AO353_03675 are separated by 138 nucleotides
AO353_03660: AO353_03660 - hypothetical protein, at 780,736 to 781,677
_03660
AO353_03665: AO353_03665 - glutathione S-transferase, at 781,674 to 782,306
_03665
AO353_03670: AO353_03670 - ornithine acetyltransferase, at 782,403 to 783,620
_03670
AO353_03675: AO353_03675 - preprotein translocase subunit SecA, at 783,759 to 786,494
_03675
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 781.660 kb on + strand at 781.660 kb on + strand at 781.660 kb on + strand at 781.661 kb on - strand at 781.661 kb on - strand at 781.661 kb on - strand at 781.661 kb on - strand at 781.661 kb on - strand at 781.684 kb on - strand at 781.684 kb on - strand at 781.692 kb on + strand at 781.732 kb on + strand at 781.732 kb on + strand at 781.733 kb on - strand at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.747 kb on + strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.748 kb on - strand, within AO353_03665 at 781.758 kb on + strand, within AO353_03665 at 781.759 kb on - strand, within AO353_03665 at 781.759 kb on - strand, within AO353_03665 at 781.780 kb on + strand, within AO353_03665 at 781.780 kb on + strand, within AO353_03665 at 781.780 kb on + strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.781 kb on - strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.784 kb on + strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.785 kb on - strand, within AO353_03665 at 781.800 kb on + strand, within AO353_03665 at 781.800 kb on + strand, within AO353_03665 at 781.800 kb on + strand, within AO353_03665 at 781.800 kb on + strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.801 kb on - strand, within AO353_03665 at 781.830 kb on + strand, within AO353_03665 at 781.831 kb on - strand, within AO353_03665 at 781.831 kb on - strand, within AO353_03665 at 781.976 kb on + strand, within AO353_03665 at 781.977 kb on - strand, within AO353_03665 at 781.977 kb on - strand, within AO353_03665 at 782.087 kb on - strand, within AO353_03665 at 782.087 kb on - strand, within AO353_03665 at 782.218 kb on + strand, within AO353_03665 at 782.218 kb on + strand, within AO353_03665 at 782.218 kb on + strand, within AO353_03665 at 782.218 kb on + strand, within AO353_03665 at 782.219 kb on - strand, within AO353_03665 at 782.219 kb on - strand, within AO353_03665 at 782.272 kb on + strand at 782.272 kb on + strand at 782.272 kb on + strand at 782.272 kb on + strand at 782.273 kb on - strand at 782.273 kb on - strand at 782.299 kb on + strand at 782.299 kb on + strand at 782.299 kb on + strand at 782.299 kb on + strand at 782.299 kb on + strand at 782.299 kb on + strand at 782.300 kb on - strand at 782.300 kb on - strand at 782.300 kb on - strand at 782.300 kb on - strand at 782.300 kb on - strand at 782.376 kb on - strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.405 kb on - strand at 782.405 kb on - strand at 782.405 kb on - strand at 782.434 kb on + strand at 782.434 kb on + strand at 782.434 kb on + strand at 782.434 kb on + strand at 782.434 kb on + strand at 782.435 kb on - strand at 782.435 kb on - strand at 782.435 kb on - strand at 782.435 kb on - strand at 782.435 kb on - strand at 782.523 kb on + strand at 782.524 kb on - strand at 782.548 kb on + strand, within AO353_03670 at 782.548 kb on + strand, within AO353_03670 at 782.548 kb on + strand, within AO353_03670 at 782.548 kb on + strand, within AO353_03670 at 782.549 kb on - strand, within AO353_03670 at 782.549 kb on - strand, within AO353_03670 at 782.549 kb on - strand, within AO353_03670 at 782.549 kb on - strand, within AO353_03670 at 782.549 kb on - strand, within AO353_03670 at 782.722 kb on + strand, within AO353_03670 at 783.044 kb on - strand, within AO353_03670 at 783.283 kb on + strand, within AO353_03670 at 783.406 kb on + strand, within AO353_03670 at 783.406 kb on + strand, within AO353_03670 at 783.407 kb on - strand, within AO353_03670 at 783.407 kb on - strand, within AO353_03670 at 783.407 kb on - strand, within AO353_03670 at 783.635 kb on + strand at 783.635 kb on + strand at 783.635 kb on + strand at 783.635 kb on + strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.636 kb on - strand at 783.640 kb on + strand at 783.640 kb on + strand at 783.640 kb on + strand at 783.640 kb on + strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.641 kb on - strand at 783.691 kb on + strand at 783.691 kb on + strand at 783.691 kb on + strand at 783.692 kb on - strand at 783.692 kb on - strand at 783.692 kb on - strand at 783.692 kb on - strand at 783.699 kb on - strand at 783.699 kb on - strand at 783.699 kb on - strand at 783.736 kb on + strand at 783.737 kb on - strand at 783.760 kb on + strand at 783.760 kb on + strand at 783.761 kb on - strand at 783.808 kb on + strand at 783.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 781,660 + -0.4 781,660 + +1.3 781,660 + -1.8 781,661 - -0.7 781,661 - +0.1 781,661 - +0.1 781,661 - +1.4 781,661 - +1.5 781,684 - -2.0 781,684 - -0.4 781,692 + +0.5 781,732 + -3.0 781,732 + +0.1 781,733 - -1.5 781,747 + AO353_03665 0.12 +0.1 781,747 + AO353_03665 0.12 -0.4 781,747 + AO353_03665 0.12 +1.0 781,747 + AO353_03665 0.12 -0.6 781,747 + +0.9 781,747 + AO353_03665 0.12 -0.3 781,747 + AO353_03665 0.12 +0.6 781,747 + AO353_03665 0.12 +0.1 781,747 + AO353_03665 0.12 +1.4 781,747 + AO353_03665 0.12 +0.2 781,747 + AO353_03665 0.12 +0.1 781,748 - AO353_03665 0.12 -0.6 781,748 - AO353_03665 0.12 +0.5 781,748 - AO353_03665 0.12 -0.3 781,748 - AO353_03665 0.12 +1.2 781,748 - AO353_03665 0.12 -1.8 781,748 - AO353_03665 0.12 -0.1 781,748 - AO353_03665 0.12 +1.9 781,748 - AO353_03665 0.12 +0.4 781,758 + AO353_03665 0.13 -1.6 781,759 - AO353_03665 0.13 -0.7 781,759 - AO353_03665 0.13 +0.8 781,780 + AO353_03665 0.17 +0.1 781,780 + AO353_03665 0.17 +0.9 781,780 + AO353_03665 0.17 -0.5 781,781 - AO353_03665 0.17 +0.6 781,781 - AO353_03665 0.17 +0.4 781,781 - AO353_03665 0.17 -1.2 781,781 - AO353_03665 0.17 -0.1 781,781 - AO353_03665 0.17 +0.2 781,781 - AO353_03665 0.17 +0.2 781,784 + AO353_03665 0.17 -1.1 781,784 + AO353_03665 0.17 -0.2 781,784 + AO353_03665 0.17 -0.4 781,784 + AO353_03665 0.17 +0.6 781,784 + AO353_03665 0.17 -0.4 781,784 + AO353_03665 0.17 +0.0 781,784 + AO353_03665 0.17 +0.5 781,784 + AO353_03665 0.17 -0.9 781,785 - AO353_03665 0.18 +0.6 781,785 - AO353_03665 0.18 -1.0 781,785 - AO353_03665 0.18 +0.9 781,785 - AO353_03665 0.18 -2.5 781,785 - AO353_03665 0.18 -0.4 781,785 - AO353_03665 0.18 -0.1 781,785 - AO353_03665 0.18 +1.6 781,785 - AO353_03665 0.18 -2.1 781,800 + AO353_03665 0.20 +1.2 781,800 + AO353_03665 0.20 -0.5 781,800 + AO353_03665 0.20 -0.1 781,800 + AO353_03665 0.20 -1.2 781,801 - AO353_03665 0.20 +0.5 781,801 - AO353_03665 0.20 -2.3 781,801 - AO353_03665 0.20 +0.5 781,801 - AO353_03665 0.20 +0.2 781,801 - AO353_03665 0.20 -0.3 781,801 - AO353_03665 0.20 +0.9 781,801 - AO353_03665 0.20 +0.2 781,801 - AO353_03665 0.20 -3.4 781,830 + AO353_03665 0.25 -0.3 781,831 - AO353_03665 0.25 +1.2 781,831 - AO353_03665 0.25 -0.7 781,976 + AO353_03665 0.48 +0.0 781,977 - AO353_03665 0.48 -0.1 781,977 - AO353_03665 0.48 +2.3 782,087 - AO353_03665 0.65 +0.7 782,087 - AO353_03665 0.65 +0.9 782,218 + AO353_03665 0.86 +1.9 782,218 + AO353_03665 0.86 -2.0 782,218 + AO353_03665 0.86 -1.4 782,218 + AO353_03665 0.86 +0.5 782,219 - AO353_03665 0.86 -0.7 782,219 - AO353_03665 0.86 -0.9 782,272 + -0.1 782,272 + -0.8 782,272 + +1.6 782,272 + -1.7 782,273 - -0.1 782,273 - +0.5 782,299 + +1.9 782,299 + -0.5 782,299 + +0.1 782,299 + +0.7 782,299 + +0.9 782,299 + +1.1 782,300 - -0.1 782,300 - -0.8 782,300 - +0.3 782,300 - -1.0 782,300 - -0.1 782,376 - -1.6 782,404 + -1.1 782,404 + -0.1 782,404 + +1.3 782,404 + +0.8 782,404 + -0.9 782,404 + -0.2 782,404 + +0.5 782,404 + -0.9 782,404 + +0.3 782,404 + -0.1 782,405 - -2.2 782,405 - +0.9 782,405 - -0.2 782,434 + -0.1 782,434 + +0.7 782,434 + -0.2 782,434 + +0.6 782,434 + -1.4 782,435 - +0.3 782,435 - -0.9 782,435 - -0.4 782,435 - -1.0 782,435 - -0.4 782,523 + +0.1 782,524 - -0.9 782,548 + AO353_03670 0.12 -0.5 782,548 + AO353_03670 0.12 -0.2 782,548 + AO353_03670 0.12 -0.5 782,548 + AO353_03670 0.12 -2.0 782,549 - AO353_03670 0.12 -0.1 782,549 - AO353_03670 0.12 -1.2 782,549 - AO353_03670 0.12 +0.3 782,549 - AO353_03670 0.12 +1.1 782,549 - AO353_03670 0.12 -1.2 782,722 + AO353_03670 0.26 +0.2 783,044 - AO353_03670 0.53 -2.4 783,283 + AO353_03670 0.72 +0.5 783,406 + AO353_03670 0.82 -2.1 783,406 + AO353_03670 0.82 -0.7 783,407 - AO353_03670 0.82 -0.1 783,407 - AO353_03670 0.82 -1.9 783,407 - AO353_03670 0.82 -0.8 783,635 + -0.5 783,635 + -0.4 783,635 + -1.0 783,635 + +1.2 783,636 - +0.2 783,636 - -0.9 783,636 - +1.0 783,636 - +1.2 783,636 - +0.8 783,636 - +0.9 783,636 - +2.2 783,636 - -1.4 783,640 + +0.0 783,640 + -0.3 783,640 + +0.6 783,640 + -1.4 783,641 - +0.2 783,641 - -0.7 783,641 - -0.9 783,641 - -1.5 783,641 - +1.5 783,641 - -0.1 783,641 - +0.3 783,641 - +0.6 783,641 - +0.3 783,691 + -0.8 783,691 + -1.1 783,691 + -1.3 783,692 - +1.5 783,692 - -1.4 783,692 - +0.5 783,692 - +0.5 783,699 - +0.1 783,699 - -0.2 783,699 - +0.6 783,736 + -0.4 783,737 - -2.2 783,760 + -1.2 783,760 + -0.2 783,761 - +0.2 783,808 + -2.4 783,809 - -1.9
Or see this region's nucleotide sequence