Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03635 and AO353_03640 are separated by 139 nucleotides AO353_03640 and AO353_03645 are separated by 143 nucleotides
AO353_03635: AO353_03635 - mechanosensitive ion channel protein MscS, at 775,400 to 776,236
_03635
AO353_03640: AO353_03640 - nucleotide-binding protein, at 776,376 to 776,861
_03640
AO353_03645: AO353_03645 - 2-dehydropantoate 2-reductase, at 777,005 to 777,922
_03645
Position (kb) 776
777 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 775.383 kb on + strand at 775.383 kb on + strand at 775.383 kb on + strand at 775.383 kb on + strand at 775.383 kb on + strand at 775.383 kb on + strand at 775.384 kb on - strand at 775.384 kb on - strand at 775.384 kb on - strand at 775.384 kb on - strand at 775.386 kb on + strand at 775.386 kb on + strand at 775.387 kb on - strand at 775.387 kb on - strand at 775.387 kb on - strand at 775.387 kb on - strand at 775.387 kb on - strand at 775.402 kb on - strand at 775.420 kb on + strand at 775.420 kb on + strand at 775.420 kb on + strand at 775.453 kb on + strand at 775.453 kb on + strand at 775.453 kb on + strand at 775.453 kb on + strand at 775.454 kb on - strand at 775.454 kb on - strand at 775.513 kb on - strand, within AO353_03635 at 775.513 kb on - strand, within AO353_03635 at 775.550 kb on - strand, within AO353_03635 at 775.550 kb on - strand, within AO353_03635 at 775.550 kb on - strand, within AO353_03635 at 775.665 kb on + strand, within AO353_03635 at 775.741 kb on + strand, within AO353_03635 at 775.742 kb on - strand, within AO353_03635 at 775.742 kb on - strand, within AO353_03635 at 775.742 kb on - strand, within AO353_03635 at 775.742 kb on - strand, within AO353_03635 at 775.742 kb on - strand, within AO353_03635 at 776.042 kb on - strand, within AO353_03635 at 776.042 kb on - strand, within AO353_03635 at 776.042 kb on - strand, within AO353_03635 at 776.042 kb on - strand, within AO353_03635 at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.228 kb on + strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.229 kb on - strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.238 kb on + strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.239 kb on - strand at 776.269 kb on + strand at 776.270 kb on - strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.327 kb on + strand at 776.328 kb on - strand at 776.328 kb on - strand at 776.328 kb on - strand at 776.478 kb on + strand, within AO353_03640 at 776.479 kb on - strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.611 kb on + strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.612 kb on - strand, within AO353_03640 at 776.623 kb on - strand, within AO353_03640 at 776.623 kb on - strand, within AO353_03640 at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.863 kb on + strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.864 kb on - strand at 776.876 kb on - strand at 776.895 kb on - strand at 776.938 kb on + strand at 776.938 kb on + strand at 776.939 kb on - strand at 776.939 kb on - strand at 776.939 kb on - strand at 776.939 kb on - strand at 776.939 kb on - strand at 776.939 kb on - strand at 776.940 kb on + strand at 776.940 kb on + strand at 776.941 kb on - strand at 776.951 kb on + strand at 776.951 kb on + strand at 776.951 kb on + strand at 776.959 kb on + strand at 776.959 kb on + strand at 776.960 kb on - strand at 776.960 kb on - strand at 777.441 kb on - strand, within AO353_03645 at 777.441 kb on - strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.752 kb on + strand, within AO353_03645 at 777.753 kb on - strand, within AO353_03645 at 777.753 kb on - strand, within AO353_03645 at 777.753 kb on - strand, within AO353_03645 at 777.753 kb on - strand, within AO353_03645 at 777.764 kb on + strand, within AO353_03645 at 777.764 kb on + strand, within AO353_03645 at 777.764 kb on + strand, within AO353_03645 at 777.764 kb on + strand, within AO353_03645 at 777.765 kb on - strand, within AO353_03645 at 777.765 kb on - strand, within AO353_03645 at 777.803 kb on + strand, within AO353_03645 at 777.803 kb on + strand, within AO353_03645 at 777.803 kb on + strand, within AO353_03645 at 777.803 kb on + strand, within AO353_03645 at 777.804 kb on - strand, within AO353_03645 at 777.804 kb on - strand, within AO353_03645 at 777.804 kb on - strand, within AO353_03645 at 777.804 kb on - strand, within AO353_03645 at 777.804 kb on - strand, within AO353_03645
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 775,383 + +2.1 775,383 + -1.4 775,383 + -1.4 775,383 + -0.6 775,383 + -0.2 775,383 + -2.0 775,384 - +0.8 775,384 - -0.5 775,384 - +0.3 775,384 - +0.4 775,386 + -0.3 775,386 + +0.9 775,387 - +0.0 775,387 - +0.4 775,387 - -0.1 775,387 - -0.1 775,387 - -1.1 775,402 - -0.3 775,420 + +0.7 775,420 + +0.4 775,420 + +0.2 775,453 + -0.5 775,453 + -1.1 775,453 + -0.3 775,453 + -0.8 775,454 - +1.5 775,454 - -1.0 775,513 - AO353_03635 0.14 -0.5 775,513 - AO353_03635 0.14 -1.3 775,550 - AO353_03635 0.18 +0.5 775,550 - AO353_03635 0.18 -0.2 775,550 - AO353_03635 0.18 +0.1 775,665 + AO353_03635 0.32 +1.1 775,741 + AO353_03635 0.41 -0.6 775,742 - AO353_03635 0.41 -0.4 775,742 - AO353_03635 0.41 +0.4 775,742 - AO353_03635 0.41 -0.3 775,742 - AO353_03635 0.41 -1.0 775,742 - AO353_03635 0.41 +0.5 776,042 - AO353_03635 0.77 -0.9 776,042 - AO353_03635 0.77 -0.3 776,042 - AO353_03635 0.77 -0.4 776,042 - AO353_03635 0.77 +0.4 776,228 + +0.2 776,228 + +0.2 776,228 + -0.7 776,228 + -0.3 776,228 + -2.0 776,228 + -0.1 776,228 + -0.3 776,228 + +0.3 776,228 + +0.9 776,228 + +2.6 776,228 + +0.0 776,228 + +1.2 776,228 + -0.4 776,228 + -0.2 776,228 + +0.5 776,228 + +0.1 776,228 + +0.5 776,228 + -1.5 776,228 + -0.4 776,228 + -1.3 776,228 + -0.8 776,228 + -0.6 776,228 + -1.1 776,228 + +0.3 776,228 + -0.5 776,229 - +0.2 776,229 - +0.5 776,229 - -0.5 776,229 - -1.3 776,229 - +0.8 776,229 - +0.6 776,229 - -0.1 776,229 - +0.6 776,229 - -2.5 776,229 - +0.2 776,229 - -1.7 776,229 - -0.6 776,229 - +0.3 776,229 - -1.8 776,229 - -1.5 776,229 - +1.0 776,229 - -1.2 776,229 - -0.3 776,229 - +0.2 776,229 - +0.9 776,238 + -1.5 776,238 + -0.1 776,238 + -0.2 776,238 + -0.1 776,238 + -0.6 776,238 + +0.2 776,238 + -0.3 776,238 + -1.4 776,238 + +0.2 776,238 + -0.9 776,238 + -1.2 776,238 + -2.1 776,238 + -0.2 776,238 + +0.5 776,238 + -1.1 776,238 + +0.1 776,238 + -0.6 776,239 - +0.6 776,239 - -0.5 776,239 - +0.6 776,239 - +0.5 776,239 - +0.1 776,239 - +0.1 776,239 - -0.1 776,239 - -1.3 776,239 - -0.3 776,239 - -0.1 776,239 - +0.8 776,239 - -0.6 776,239 - -1.3 776,239 - -0.6 776,239 - -0.4 776,239 - -0.1 776,239 - -0.7 776,269 + +0.7 776,270 - -0.5 776,327 + -0.9 776,327 + +0.1 776,327 + -1.0 776,327 + -1.2 776,327 + -1.2 776,327 + -1.3 776,327 + -1.0 776,328 - +0.1 776,328 - -1.2 776,328 - -1.3 776,478 + AO353_03640 0.21 -0.1 776,479 - AO353_03640 0.21 -1.8 776,611 + AO353_03640 0.48 -1.1 776,611 + AO353_03640 0.48 -1.3 776,611 + AO353_03640 0.48 -1.6 776,611 + AO353_03640 0.48 -2.4 776,611 + AO353_03640 0.48 -1.9 776,611 + AO353_03640 0.48 -1.9 776,611 + AO353_03640 0.48 -2.0 776,611 + AO353_03640 0.48 -0.9 776,612 - AO353_03640 0.49 -0.4 776,612 - AO353_03640 0.49 -0.2 776,612 - AO353_03640 0.49 -0.7 776,612 - AO353_03640 0.49 -1.1 776,612 - AO353_03640 0.49 -0.9 776,612 - AO353_03640 0.49 +0.1 776,623 - AO353_03640 0.51 +1.3 776,623 - AO353_03640 0.51 -0.7 776,863 + +0.8 776,863 + +0.1 776,863 + -1.3 776,863 + -0.7 776,863 + -0.7 776,863 + -1.3 776,863 + -2.2 776,863 + -1.5 776,863 + -2.1 776,864 - +0.1 776,864 - -1.7 776,864 - -1.0 776,864 - -0.8 776,864 - -0.0 776,864 - -0.3 776,864 - -0.4 776,864 - -0.1 776,876 - +0.5 776,895 - -2.0 776,938 + +0.7 776,938 + -0.4 776,939 - +1.7 776,939 - +0.1 776,939 - -2.6 776,939 - -0.9 776,939 - +0.3 776,939 - -1.2 776,940 + -0.1 776,940 + -0.3 776,941 - +2.9 776,951 + +0.2 776,951 + -0.4 776,951 + +1.6 776,959 + -1.4 776,959 + +0.9 776,960 - +0.1 776,960 - -0.4 777,441 - AO353_03645 0.47 +1.4 777,441 - AO353_03645 0.47 +0.9 777,752 + AO353_03645 0.81 +2.4 777,752 + AO353_03645 0.81 +2.3 777,752 + AO353_03645 0.81 -0.6 777,752 + AO353_03645 0.81 +1.7 777,752 + AO353_03645 0.81 -1.2 777,752 + AO353_03645 0.81 -0.3 777,752 + AO353_03645 0.81 -0.3 777,752 + AO353_03645 0.81 +0.7 777,753 - AO353_03645 0.81 +0.3 777,753 - AO353_03645 0.81 -0.4 777,753 - AO353_03645 0.81 +0.9 777,753 - AO353_03645 0.81 -0.0 777,764 + AO353_03645 0.83 -1.7 777,764 + AO353_03645 0.83 +0.4 777,764 + AO353_03645 0.83 +0.5 777,764 + AO353_03645 0.83 +0.9 777,765 - AO353_03645 0.83 -1.1 777,765 - AO353_03645 0.83 -2.2 777,803 + AO353_03645 0.87 +0.3 777,803 + AO353_03645 0.87 -1.1 777,803 + AO353_03645 0.87 +1.8 777,803 + AO353_03645 0.87 -0.7 777,804 - AO353_03645 0.87 +0.4 777,804 - AO353_03645 0.87 -0.1 777,804 - AO353_03645 0.87 -1.8 777,804 - AO353_03645 0.87 +0.9 777,804 - AO353_03645 0.87 -0.4
Or see this region's nucleotide sequence