Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03535 and AO353_03540 are separated by 1 nucleotides AO353_03540 and AO353_03545 are separated by 169 nucleotides AO353_03545 and AO353_03550 are separated by 6 nucleotides AO353_03550 and AO353_03555 are separated by 52 nucleotides
AO353_03535: AO353_03535 - 7-cyano-7-deazaguanine synthase, at 757,826 to 758,518
_03535
AO353_03540: AO353_03540 - 7-carboxy-7-deazaguanine synthase, at 758,520 to 759,167
_03540
AO353_03545: AO353_03545 - hypothetical protein, at 759,337 to 760,170
_03545
AO353_03550: AO353_03550 - peptidoglycan-binding protein, at 760,177 to 760,674
_03550
AO353_03555: AO353_03555 - translocation protein TolB, at 760,727 to 761,986
_03555
Position (kb) 759
760
761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 758.348 kb on + strand, within AO353_03535 at 758.391 kb on + strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.497 kb on + strand at 758.497 kb on + strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.678 kb on - strand, within AO353_03540 at 758.708 kb on - strand, within AO353_03540 at 758.773 kb on + strand, within AO353_03540 at 758.852 kb on + strand, within AO353_03540 at 758.853 kb on - strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.928 kb on - strand, within AO353_03540 at 758.965 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.053 kb on - strand, within AO353_03540 at 759.090 kb on + strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.134 kb on - strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.189 kb on + strand at 759.189 kb on + strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.319 kb on + strand at 759.320 kb on - strand at 759.320 kb on - strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.381 kb on + strand at 759.432 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.500 kb on + strand, within AO353_03545 at 759.501 kb on - strand, within AO353_03545 at 759.578 kb on + strand, within AO353_03545 at 759.579 kb on - strand, within AO353_03545 at 759.612 kb on - strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.689 kb on + strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.690 kb on - strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.692 kb on + strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.693 kb on - strand, within AO353_03545 at 759.783 kb on + strand, within AO353_03545 at 759.846 kb on + strand, within AO353_03545 at 759.898 kb on + strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 759.899 kb on - strand, within AO353_03545 at 760.019 kb on + strand, within AO353_03545 at 760.032 kb on + strand, within AO353_03545 at 760.032 kb on + strand, within AO353_03545 at 760.038 kb on - strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.071 kb on + strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.072 kb on - strand, within AO353_03545 at 760.147 kb on + strand at 760.147 kb on + strand at 760.147 kb on + strand at 760.148 kb on - strand at 760.148 kb on - strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.179 kb on - strand at 760.182 kb on + strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.183 kb on - strand at 760.687 kb on - strand at 760.687 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.705 kb on - strand at 760.709 kb on - strand at 760.709 kb on - strand at 760.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 758,348 + AO353_03535 0.75 +0.0 758,391 + AO353_03535 0.82 +0.1 758,392 - AO353_03535 0.82 -0.3 758,392 - AO353_03535 0.82 -0.1 758,409 + AO353_03535 0.84 -0.2 758,409 + AO353_03535 0.84 -0.3 758,409 + AO353_03535 0.84 -1.0 758,410 - AO353_03535 0.84 -2.0 758,410 - AO353_03535 0.84 -0.8 758,410 - AO353_03535 0.84 +0.9 758,410 - AO353_03535 0.84 -0.0 758,497 + -0.4 758,497 + -0.9 758,498 - -0.6 758,498 - +1.2 758,498 - +0.3 758,548 + -0.9 758,548 + +1.1 758,548 + -0.2 758,548 + +0.8 758,549 - -0.1 758,549 - +0.8 758,549 - +0.2 758,549 - -1.6 758,549 - +1.0 758,549 - +0.8 758,552 + -1.3 758,552 + +2.6 758,552 + -0.6 758,552 + -0.1 758,552 + -0.9 758,553 - -0.7 758,553 - -1.4 758,553 - +0.1 758,553 - -0.7 758,553 - -1.4 758,553 - -1.3 758,553 - +1.9 758,678 - AO353_03540 0.24 +0.6 758,708 - AO353_03540 0.29 +0.5 758,773 + AO353_03540 0.39 +1.3 758,852 + AO353_03540 0.51 +1.5 758,853 - AO353_03540 0.51 +0.9 758,901 + AO353_03540 0.59 +0.3 758,901 + AO353_03540 0.59 -0.5 758,901 + AO353_03540 0.59 +1.6 758,901 + AO353_03540 0.59 -0.7 758,901 + AO353_03540 0.59 -0.5 758,901 + AO353_03540 0.59 +0.1 758,901 + AO353_03540 0.59 +0.5 758,901 + AO353_03540 0.59 +1.3 758,902 - AO353_03540 0.59 +0.5 758,902 - AO353_03540 0.59 -1.3 758,927 + AO353_03540 0.63 -0.6 758,927 + AO353_03540 0.63 -0.3 758,928 - AO353_03540 0.63 +0.3 758,965 + AO353_03540 0.69 -0.9 759,037 + AO353_03540 0.80 +1.0 759,037 + AO353_03540 0.80 -0.7 759,037 + AO353_03540 0.80 -0.3 759,038 - AO353_03540 0.80 +0.7 759,038 - AO353_03540 0.80 -0.1 759,038 - AO353_03540 0.80 +2.5 759,053 - AO353_03540 0.82 -1.6 759,090 + AO353_03540 0.88 -2.4 759,091 - AO353_03540 0.88 +0.2 759,091 - AO353_03540 0.88 -1.8 759,091 - AO353_03540 0.88 +0.7 759,091 - AO353_03540 0.88 +0.1 759,134 - -1.4 759,167 + -1.4 759,167 + +2.1 759,167 + +1.1 759,168 - +0.3 759,168 - -0.1 759,168 - +0.9 759,189 + +0.2 759,189 + -0.9 759,190 - -0.4 759,190 - +0.1 759,190 - +1.6 759,190 - +2.1 759,219 + -1.3 759,219 + -1.3 759,219 + +0.9 759,219 + +3.7 759,220 - +2.3 759,220 - +1.0 759,220 - -0.9 759,220 - -1.1 759,319 + +0.4 759,320 - +0.3 759,320 - -0.8 759,338 + -0.9 759,338 + -0.4 759,338 + -0.4 759,338 + +0.4 759,338 + +2.5 759,338 + -0.9 759,338 + -0.7 759,338 + +0.9 759,338 + +1.9 759,338 + -1.3 759,339 - -2.0 759,339 - +0.9 759,339 - +1.0 759,339 - -0.3 759,339 - -2.0 759,339 - +0.8 759,339 - +1.0 759,339 - +0.5 759,339 - +0.5 759,339 - +0.4 759,339 - +1.0 759,339 - +0.8 759,339 - -1.1 759,339 - -1.3 759,339 - -0.4 759,339 - +0.5 759,339 - +1.7 759,381 + -1.6 759,432 + AO353_03545 0.11 -1.6 759,451 + AO353_03545 0.14 -0.9 759,451 + AO353_03545 0.14 -0.3 759,452 - AO353_03545 0.14 +0.5 759,452 - AO353_03545 0.14 -0.9 759,467 + AO353_03545 0.16 +0.3 759,467 + AO353_03545 0.16 -1.1 759,468 - AO353_03545 0.16 -0.4 759,468 - AO353_03545 0.16 -3.0 759,468 - AO353_03545 0.16 -1.6 759,500 + AO353_03545 0.20 -0.5 759,501 - AO353_03545 0.20 +0.3 759,578 + AO353_03545 0.29 -1.9 759,579 - AO353_03545 0.29 -0.3 759,612 - AO353_03545 0.33 +1.4 759,689 + AO353_03545 0.42 -1.6 759,689 + AO353_03545 0.42 -2.1 759,689 + AO353_03545 0.42 -0.1 759,690 - AO353_03545 0.42 -2.8 759,690 - AO353_03545 0.42 -3.0 759,690 - AO353_03545 0.42 -0.7 759,690 - AO353_03545 0.42 -0.3 759,692 + AO353_03545 0.43 -0.1 759,692 + AO353_03545 0.43 -0.2 759,692 + AO353_03545 0.43 +0.3 759,693 - AO353_03545 0.43 -1.3 759,693 - AO353_03545 0.43 -3.4 759,693 - AO353_03545 0.43 +0.2 759,693 - AO353_03545 0.43 -1.1 759,783 + AO353_03545 0.53 -1.3 759,846 + AO353_03545 0.61 -0.7 759,898 + AO353_03545 0.67 -1.1 759,899 - AO353_03545 0.67 -2.0 759,899 - AO353_03545 0.67 -3.2 759,899 - AO353_03545 0.67 -0.4 759,899 - AO353_03545 0.67 -0.3 759,899 - AO353_03545 0.67 -1.8 759,899 - AO353_03545 0.67 -0.9 760,019 + AO353_03545 0.82 -1.3 760,032 + AO353_03545 0.83 +0.3 760,032 + AO353_03545 0.83 +0.3 760,038 - AO353_03545 0.84 -1.9 760,071 + AO353_03545 0.88 -1.6 760,071 + AO353_03545 0.88 +0.2 760,071 + AO353_03545 0.88 -1.9 760,071 + AO353_03545 0.88 -1.8 760,071 + AO353_03545 0.88 -1.9 760,071 + AO353_03545 0.88 -1.9 760,072 - AO353_03545 0.88 -3.3 760,072 - AO353_03545 0.88 -2.4 760,072 - AO353_03545 0.88 -0.4 760,072 - AO353_03545 0.88 -0.7 760,072 - AO353_03545 0.88 -2.3 760,072 - AO353_03545 0.88 -2.6 760,072 - AO353_03545 0.88 -0.1 760,147 + -1.1 760,147 + +0.5 760,147 + -2.8 760,148 - -0.7 760,148 - -2.1 760,178 + -2.3 760,178 + -0.8 760,178 + -1.6 760,178 + -2.1 760,178 + -2.1 760,179 - -1.8 760,179 - -1.9 760,179 - -2.8 760,179 - -2.8 760,182 + -1.7 760,183 - -1.6 760,183 - -1.9 760,183 - -0.7 760,183 - -2.0 760,183 - +1.3 760,687 - -2.4 760,687 - -3.8 760,705 - -1.3 760,705 - -1.3 760,705 - -0.3 760,705 - -0.9 760,705 - +0.0 760,709 - -2.6 760,709 - -1.6 760,738 - -1.6
Or see this region's nucleotide sequence