Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03505 and AO353_03510 are separated by 41 nucleotides AO353_03510 and AO353_03515 are separated by 401 nucleotides AO353_03515 and AO353_03520 are separated by 96 nucleotides
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816
_03510
AO353_03515: AO353_03515 - cold-shock protein, at 754,218 to 754,430
_03515
AO353_03520: AO353_03520 - hypothetical protein, at 754,527 to 755,015
_03520
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.180 kb on + strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.181 kb on - strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.183 kb on + strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.184 kb on - strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.261 kb on + strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.262 kb on - strand, within AO353_03505 at 752.601 kb on - strand at 752.601 kb on - strand at 752.601 kb on - strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.691 kb on + strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.692 kb on - strand at 752.773 kb on + strand at 752.956 kb on + strand, within AO353_03510 at 753.410 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.527 kb on + strand, within AO353_03510 at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.773 kb on + strand at 753.774 kb on - strand at 753.802 kb on + strand at 753.802 kb on + strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.828 kb on + strand at 753.828 kb on + strand at 753.829 kb on - strand at 753.829 kb on - strand at 753.830 kb on + strand at 753.830 kb on + strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.835 kb on - strand at 753.858 kb on + strand at 753.859 kb on - strand at 753.891 kb on + strand at 753.891 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.929 kb on - strand at 753.955 kb on + strand at 754.041 kb on + strand at 754.051 kb on - strand at 754.103 kb on + strand at 754.108 kb on + strand at 754.108 kb on + strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.116 kb on - strand at 754.116 kb on - strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.141 kb on - strand at 754.141 kb on - strand at 754.164 kb on - strand at 754.164 kb on - strand at 754.212 kb on + strand at 754.253 kb on + strand, within AO353_03515 at 754.277 kb on + strand, within AO353_03515 at 754.278 kb on - strand, within AO353_03515 at 754.331 kb on + strand, within AO353_03515 at 754.414 kb on + strand at 754.415 kb on - strand at 754.602 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 751,703 + AO353_03505 0.31 -0.7 751,704 - AO353_03505 0.31 +0.8 751,704 - AO353_03505 0.31 -2.5 751,704 - AO353_03505 0.31 -0.0 751,704 - AO353_03505 0.31 -0.3 751,771 + AO353_03505 0.36 -0.5 751,771 + AO353_03505 0.36 +0.1 751,832 + AO353_03505 0.41 +0.2 751,832 + AO353_03505 0.41 -1.1 751,833 - AO353_03505 0.41 +0.8 752,084 + AO353_03505 0.59 +1.0 752,084 + AO353_03505 0.59 -1.1 752,085 - AO353_03505 0.59 +0.3 752,085 - AO353_03505 0.59 -0.4 752,085 - AO353_03505 0.59 -0.1 752,085 - AO353_03505 0.59 +0.0 752,180 + AO353_03505 0.66 -0.0 752,180 + AO353_03505 0.66 -1.0 752,180 + AO353_03505 0.66 -1.3 752,180 + AO353_03505 0.66 -1.1 752,180 + AO353_03505 0.66 -1.0 752,181 - AO353_03505 0.66 -0.6 752,181 - AO353_03505 0.66 +0.2 752,181 - AO353_03505 0.66 +1.6 752,181 - AO353_03505 0.66 +0.5 752,181 - AO353_03505 0.66 +0.6 752,183 + AO353_03505 0.66 -1.2 752,183 + AO353_03505 0.66 -2.8 752,183 + AO353_03505 0.66 -0.1 752,183 + AO353_03505 0.66 +0.6 752,183 + AO353_03505 0.66 +0.6 752,183 + AO353_03505 0.66 +0.0 752,183 + AO353_03505 0.66 +0.1 752,183 + AO353_03505 0.66 -0.4 752,183 + AO353_03505 0.66 -1.1 752,183 + AO353_03505 0.66 -0.7 752,183 + AO353_03505 0.66 -0.6 752,183 + AO353_03505 0.66 -1.3 752,183 + AO353_03505 0.66 -0.1 752,184 - AO353_03505 0.66 +0.1 752,184 - AO353_03505 0.66 -0.7 752,184 - AO353_03505 0.66 +2.2 752,184 - AO353_03505 0.66 -0.4 752,184 - AO353_03505 0.66 +1.3 752,184 - AO353_03505 0.66 +0.1 752,184 - AO353_03505 0.66 +0.7 752,184 - AO353_03505 0.66 -0.8 752,184 - AO353_03505 0.66 +1.5 752,184 - AO353_03505 0.66 -0.1 752,184 - AO353_03505 0.66 -2.7 752,184 - AO353_03505 0.66 +0.4 752,261 + AO353_03505 0.72 +0.4 752,261 + AO353_03505 0.72 -0.4 752,261 + AO353_03505 0.72 -1.1 752,262 - AO353_03505 0.72 -1.0 752,262 - AO353_03505 0.72 +1.5 752,262 - AO353_03505 0.72 +1.0 752,262 - AO353_03505 0.72 +0.0 752,601 - -1.6 752,601 - -0.3 752,601 - +0.9 752,691 + -2.1 752,691 + -0.7 752,691 + +0.9 752,691 + -1.4 752,691 + -1.2 752,691 + +0.3 752,691 + +0.8 752,691 + +0.7 752,691 + +0.4 752,691 + +0.2 752,691 + +0.7 752,691 + -0.4 752,691 + -2.3 752,691 + +0.1 752,691 + -2.3 752,691 + +0.5 752,691 + -0.4 752,691 + -0.6 752,692 - -1.4 752,692 - +1.0 752,692 - -1.3 752,692 - +0.4 752,692 - +0.4 752,692 - -0.8 752,692 - -0.2 752,692 - +1.0 752,692 - +1.5 752,692 - -1.6 752,692 - -1.4 752,692 - +0.5 752,692 - +0.9 752,692 - +0.6 752,692 - -0.3 752,692 - +0.2 752,692 - -0.7 752,692 - -0.4 752,692 - -2.0 752,692 - +0.7 752,773 + +0.9 752,956 + AO353_03510 0.23 +0.5 753,410 - AO353_03510 0.64 -0.2 753,472 - AO353_03510 0.69 +0.9 753,472 - AO353_03510 0.69 -0.5 753,527 + AO353_03510 0.74 -0.0 753,712 + -1.1 753,712 + -0.6 753,712 + +0.1 753,712 + +0.7 753,712 + -1.3 753,712 + -1.1 753,712 + -0.9 753,712 + -0.7 753,712 + +1.0 753,712 + -0.3 753,712 + +0.3 753,712 + -0.7 753,712 + +1.5 753,712 + +0.1 753,712 + -2.0 753,713 - +0.5 753,713 - +0.9 753,713 - -1.3 753,713 - +2.6 753,713 - +0.4 753,713 - -0.4 753,713 - -0.1 753,713 - +0.9 753,713 - -0.5 753,746 + +1.6 753,746 + -0.9 753,746 + -0.3 753,746 + -0.9 753,746 + -0.1 753,746 + +1.5 753,747 - +0.6 753,747 - +1.2 753,747 - -0.7 753,747 - +0.4 753,747 - +0.3 753,747 - +0.1 753,747 - -0.3 753,747 - +0.8 753,773 + +1.3 753,774 - +0.8 753,802 + -0.3 753,802 + -0.3 753,803 - +0.7 753,803 - +1.5 753,803 - +1.4 753,803 - +2.0 753,803 - +1.3 753,828 + +1.4 753,828 + -0.4 753,829 - +0.3 753,829 - -0.1 753,830 + -1.4 753,830 + -1.5 753,831 - -1.7 753,831 - -2.0 753,831 - -0.4 753,835 - +0.2 753,858 + +1.5 753,859 - +0.5 753,891 + -0.4 753,891 + -2.5 753,926 + +0.3 753,926 + -1.9 753,926 + -0.8 753,929 - +1.0 753,955 + -0.6 754,041 + -0.1 754,051 - +1.1 754,103 + +0.9 754,108 + +1.9 754,108 + +1.0 754,109 - +0.7 754,109 - +0.2 754,109 - +1.9 754,115 + +0.3 754,115 + +0.7 754,115 + -0.0 754,115 + -0.1 754,115 + +1.3 754,115 + +2.9 754,116 - -0.9 754,116 - +0.3 754,119 + +1.2 754,119 + -0.5 754,119 + -0.3 754,119 + +3.3 754,120 - +0.6 754,120 - +0.6 754,120 - +0.9 754,120 - -0.0 754,120 - +0.9 754,140 + +1.3 754,140 + -0.0 754,140 + +1.4 754,140 + -0.1 754,140 + +1.1 754,141 - -0.2 754,141 - -1.4 754,164 - +1.9 754,164 - +0.7 754,212 + +0.4 754,253 + AO353_03515 0.16 +0.1 754,277 + AO353_03515 0.28 +0.3 754,278 - AO353_03515 0.28 -2.6 754,331 + AO353_03515 0.53 +2.5 754,414 + +0.3 754,415 - -0.3 754,602 + AO353_03520 0.15 +1.4 754,650 + AO353_03520 0.25 +1.0 754,650 + AO353_03520 0.25 +1.6 754,650 + AO353_03520 0.25 +2.5 754,650 + AO353_03520 0.25 +1.0 754,650 + AO353_03520 0.25 +1.9 754,651 - AO353_03520 0.25 -1.3 754,651 - AO353_03520 0.25 +0.4
Or see this region's nucleotide sequence