Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02995 and AO353_03000 are separated by 12 nucleotides AO353_03000 and AO353_03005 are separated by 63 nucleotides AO353_03005 and AO353_03010 are separated by 128 nucleotides
AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219
_02995
AO353_03000: AO353_03000 - topoisomerase II, at 636,232 to 636,519
_03000
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
AO353_03010: AO353_03010 - succinylglutamate-semialdehyde dehydrogenase, at 638,058 to 639,521
_03010
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.615 kb on + strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.726 kb on + strand, within AO353_02995 at 635.777 kb on + strand, within AO353_02995 at 635.778 kb on - strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.220 kb on - strand at 636.220 kb on - strand at 636.313 kb on + strand, within AO353_03000 at 636.313 kb on + strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.322 kb on - strand, within AO353_03000 at 636.523 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.603 kb on - strand at 636.619 kb on - strand at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.808 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.912 kb on - strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005 at 637.298 kb on + strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.573 kb on - strand, within AO353_03005 at 637.862 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.881 kb on + strand at 637.897 kb on + strand at 637.897 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.959 kb on + strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.138 kb on - strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.150 kb on - strand at 638.150 kb on - strand at 638.152 kb on + strand at 638.152 kb on + strand at 638.153 kb on - strand at 638.153 kb on - strand at 638.317 kb on + strand, within AO353_03010 at 638.723 kb on + strand, within AO353_03010 at 638.724 kb on - strand, within AO353_03010 at 638.731 kb on + strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 635,609 + AO353_02995 0.40 -1.4 635,609 + AO353_02995 0.40 +0.3 635,609 + AO353_02995 0.40 +1.4 635,610 - AO353_02995 0.40 -0.7 635,610 - AO353_02995 0.40 -0.0 635,610 - AO353_02995 0.40 -0.8 635,610 - AO353_02995 0.40 -1.2 635,610 - AO353_02995 0.40 -0.9 635,615 + AO353_02995 0.40 +0.2 635,616 - AO353_02995 0.40 +2.6 635,616 - AO353_02995 0.40 -0.6 635,726 + AO353_02995 0.51 -0.6 635,777 + AO353_02995 0.56 +0.6 635,778 - AO353_02995 0.56 -0.2 635,961 + AO353_02995 0.74 -0.3 635,961 + AO353_02995 0.74 -1.5 635,961 + AO353_02995 0.74 +1.8 635,961 + AO353_02995 0.74 -0.4 635,961 + AO353_02995 0.74 -0.4 635,961 + AO353_02995 0.74 -1.0 635,962 - AO353_02995 0.74 -0.4 635,962 - AO353_02995 0.74 -0.2 635,962 - AO353_02995 0.74 -0.8 636,017 - AO353_02995 0.80 +0.1 636,017 - AO353_02995 0.80 +2.4 636,219 + -0.7 636,219 + -0.8 636,219 + +0.8 636,219 + -0.5 636,219 + +1.8 636,219 + -1.3 636,219 + +0.4 636,220 - +1.0 636,220 - +1.1 636,313 + AO353_03000 0.28 -1.5 636,313 + AO353_03000 0.28 +0.4 636,314 - AO353_03000 0.28 -0.8 636,314 - AO353_03000 0.28 +0.5 636,322 - AO353_03000 0.31 +1.0 636,523 + -1.0 636,541 + -0.5 636,541 + -2.0 636,541 + -1.2 636,542 - -1.2 636,542 - -0.1 636,542 - +0.9 636,542 - -1.2 636,542 - +0.9 636,542 - -1.3 636,603 - -0.2 636,619 - -0.5 636,741 - AO353_03005 0.12 -0.8 636,741 - AO353_03005 0.12 +0.8 636,741 - AO353_03005 0.12 +0.2 636,741 - AO353_03005 0.12 -1.2 636,741 - AO353_03005 0.12 +0.0 636,741 - AO353_03005 0.12 -1.6 636,808 + AO353_03005 0.17 -2.1 636,911 + AO353_03005 0.24 +1.1 636,911 + AO353_03005 0.24 -2.1 636,911 + AO353_03005 0.24 -1.0 636,912 - AO353_03005 0.24 +2.4 637,004 + AO353_03005 0.31 -0.2 637,004 + AO353_03005 0.31 -1.0 637,005 - AO353_03005 0.31 -2.6 637,005 - AO353_03005 0.31 +0.3 637,005 - AO353_03005 0.31 -1.1 637,005 - AO353_03005 0.31 -0.5 637,139 + AO353_03005 0.41 -1.1 637,139 + AO353_03005 0.41 +0.7 637,140 - AO353_03005 0.41 -1.9 637,298 + AO353_03005 0.53 -1.8 637,524 - AO353_03005 0.70 -1.0 637,524 - AO353_03005 0.70 -0.2 637,573 - AO353_03005 0.73 -1.5 637,862 + -1.9 637,877 + +0.5 637,877 + -1.0 637,877 + -1.1 637,877 + -0.9 637,881 + -2.1 637,897 + +0.8 637,897 + -1.2 637,919 + +0.1 637,919 + -0.1 637,919 + +0.3 637,919 + -0.6 637,920 - -0.6 637,920 - -0.8 637,920 - +0.4 637,957 + -0.8 637,957 + -0.6 637,957 + +0.0 637,958 - -1.4 637,958 - -0.7 637,958 - -1.3 637,959 + +0.4 637,960 - -1.3 637,960 - +0.8 637,960 - -0.2 637,960 - -0.5 637,960 - +0.4 638,007 + -3.0 638,007 + -2.0 638,007 + -0.3 638,007 + -0.6 638,007 + -1.3 638,007 + -1.7 638,008 - +0.5 638,008 - -1.5 638,008 - +0.2 638,016 + -0.7 638,016 + -1.8 638,016 + -1.3 638,016 + +0.8 638,017 - -0.6 638,017 - -0.9 638,017 - +0.3 638,030 - -1.3 638,030 - +0.5 638,030 - +1.5 638,037 + -0.2 638,037 + -1.3 638,037 + -1.1 638,037 + +0.3 638,037 + +0.0 638,037 + -2.0 638,037 + -0.2 638,037 + +0.0 638,038 - +0.8 638,038 - +0.0 638,038 - -0.2 638,038 - +0.5 638,038 - +0.6 638,038 - -1.4 638,038 - +0.8 638,038 - +0.4 638,038 - -1.5 638,038 - -2.2 638,038 - +1.0 638,038 - -0.3 638,038 - +0.5 638,038 - +0.4 638,038 - -0.5 638,059 + -0.9 638,059 + +0.2 638,059 + -1.2 638,059 + -0.7 638,059 + +0.1 638,060 - -1.0 638,060 - +0.3 638,060 - -1.2 638,060 - -1.2 638,060 - -0.6 638,138 - -0.0 638,149 + -1.5 638,149 + -1.2 638,149 + -0.5 638,150 - +0.2 638,150 - +0.1 638,152 + -1.2 638,152 + -1.5 638,153 - -2.2 638,153 - +0.2 638,317 + AO353_03010 0.18 +0.5 638,723 + AO353_03010 0.45 -0.4 638,724 - AO353_03010 0.45 -0.8 638,731 + AO353_03010 0.46 -1.9 638,732 - AO353_03010 0.46 -1.4 638,732 - AO353_03010 0.46 -1.1 638,732 - AO353_03010 0.46 +1.7 638,928 + AO353_03010 0.59 +0.1 638,928 + AO353_03010 0.59 -0.3 638,929 - AO353_03010 0.59 -1.3 638,929 - AO353_03010 0.59 -2.3 638,929 - AO353_03010 0.59 +0.2
Or see this region's nucleotide sequence