Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02950 and AO353_02955 are separated by 19 nucleotides AO353_02955 and AO353_02960 are separated by 72 nucleotides AO353_02960 and AO353_02965 are separated by 107 nucleotides AO353_02965 and AO353_02970 are separated by 62 nucleotides AO353_02970 and AO353_02975 are separated by 183 nucleotides
AO353_02950: AO353_02950 - cell envelope protein SmpA, at 627,576 to 628,088
_02950
AO353_02955: AO353_02955 - tRNA-Arg, at 628,108 to 628,184
_02955
AO353_02960: AO353_02960 - tRNA-Arg, at 628,257 to 628,333
_02960
AO353_02965: AO353_02965 - tRNA-Ser, at 628,441 to 628,531
_02965
AO353_02970: AO353_02970 - carbon storage regulator, at 628,594 to 628,782
_02970
AO353_02975: AO353_02975 - aspartate kinase, at 628,966 to 630,207
_02975
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.628 kb on + strand, within AO353_02950 at 627.628 kb on + strand, within AO353_02950 at 627.628 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.684 kb on + strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.685 kb on - strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.735 kb on + strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.736 kb on - strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.766 kb on + strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.767 kb on - strand, within AO353_02950 at 627.803 kb on + strand, within AO353_02950 at 627.803 kb on + strand, within AO353_02950 at 627.804 kb on - strand, within AO353_02950 at 627.804 kb on - strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.950 kb on + strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.951 kb on - strand, within AO353_02950 at 627.990 kb on + strand, within AO353_02950 at 627.990 kb on + strand, within AO353_02950 at 627.991 kb on - strand, within AO353_02950 at 627.991 kb on - strand, within AO353_02950 at 627.997 kb on - strand, within AO353_02950 at 628.051 kb on + strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.052 kb on - strand at 628.159 kb on - strand, within AO353_02955 at 628.159 kb on - strand, within AO353_02955 at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.229 kb on - strand at 628.238 kb on - strand at 628.254 kb on - strand at 628.390 kb on - strand at 628.421 kb on - strand at 628.428 kb on - strand at 628.431 kb on - strand at 628.439 kb on - strand at 628.638 kb on - strand, within AO353_02970 at 628.669 kb on - strand, within AO353_02970 at 628.669 kb on - strand, within AO353_02970 at 628.687 kb on - strand, within AO353_02970 at 628.743 kb on + strand, within AO353_02970 at 628.744 kb on - strand, within AO353_02970 at 628.744 kb on - strand, within AO353_02970 at 628.782 kb on + strand at 628.782 kb on + strand at 628.782 kb on + strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.783 kb on - strand at 628.844 kb on + strand at 628.845 kb on - strand at 628.845 kb on - strand at 628.861 kb on + strand at 628.862 kb on - strand at 628.867 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.875 kb on + strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.876 kb on - strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.879 kb on + strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 628.880 kb on - strand at 629.479 kb on - strand, within AO353_02975 at 629.479 kb on - strand, within AO353_02975 at 629.479 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975 at 629.482 kb on - strand, within AO353_02975
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 627,628 + AO353_02950 0.10 +1.5 627,628 + AO353_02950 0.10 +1.8 627,628 + AO353_02950 0.10 +0.4 627,684 + AO353_02950 0.21 +1.3 627,684 + AO353_02950 0.21 +1.8 627,684 + AO353_02950 0.21 -0.2 627,684 + AO353_02950 0.21 -1.9 627,684 + AO353_02950 0.21 -1.7 627,684 + AO353_02950 0.21 +0.8 627,685 - AO353_02950 0.21 +0.0 627,685 - AO353_02950 0.21 +1.4 627,685 - AO353_02950 0.21 +0.5 627,685 - AO353_02950 0.21 +0.8 627,685 - AO353_02950 0.21 -0.8 627,735 + AO353_02950 0.31 +0.8 627,735 + AO353_02950 0.31 +1.5 627,735 + AO353_02950 0.31 +1.2 627,735 + AO353_02950 0.31 +0.8 627,735 + AO353_02950 0.31 +1.1 627,735 + AO353_02950 0.31 +0.2 627,735 + AO353_02950 0.31 -0.4 627,736 - AO353_02950 0.31 -0.2 627,736 - AO353_02950 0.31 +0.4 627,736 - AO353_02950 0.31 -0.2 627,736 - AO353_02950 0.31 +3.1 627,766 + AO353_02950 0.37 -1.0 627,766 + AO353_02950 0.37 +2.5 627,766 + AO353_02950 0.37 +1.8 627,767 - AO353_02950 0.37 +2.1 627,767 - AO353_02950 0.37 -0.3 627,767 - AO353_02950 0.37 +0.5 627,803 + AO353_02950 0.44 +1.2 627,803 + AO353_02950 0.44 +0.8 627,804 - AO353_02950 0.44 -0.8 627,804 - AO353_02950 0.44 +1.1 627,950 + AO353_02950 0.73 +1.2 627,950 + AO353_02950 0.73 -0.8 627,950 + AO353_02950 0.73 +1.1 627,951 - AO353_02950 0.73 +1.5 627,951 - AO353_02950 0.73 +1.5 627,951 - AO353_02950 0.73 +1.2 627,990 + AO353_02950 0.81 +0.7 627,990 + AO353_02950 0.81 +0.8 627,991 - AO353_02950 0.81 -0.1 627,991 - AO353_02950 0.81 -0.2 627,997 - AO353_02950 0.82 -0.4 628,051 + +1.5 628,052 - -0.1 628,052 - +0.4 628,052 - +0.9 628,052 - +0.9 628,052 - -0.4 628,052 - +0.9 628,159 - AO353_02955 0.66 +0.3 628,159 - AO353_02955 0.66 +0.0 628,229 - -0.8 628,229 - -2.3 628,229 - -2.8 628,229 - -1.6 628,229 - -1.5 628,238 - -0.2 628,254 - -1.4 628,390 - +2.0 628,421 - -0.8 628,428 - +0.8 628,431 - -1.9 628,439 - -1.6 628,638 - AO353_02970 0.23 -0.8 628,669 - AO353_02970 0.40 +0.8 628,669 - AO353_02970 0.40 -1.0 628,687 - AO353_02970 0.49 -1.9 628,743 + AO353_02970 0.79 +0.2 628,744 - AO353_02970 0.79 -1.4 628,744 - AO353_02970 0.79 -1.4 628,782 + -1.2 628,782 + -2.2 628,782 + -0.8 628,783 - -1.0 628,783 - -1.5 628,783 - +0.2 628,783 - -3.0 628,844 + -1.8 628,845 - -0.1 628,845 - -0.0 628,861 + +0.2 628,862 - -0.7 628,867 + -2.1 628,875 + -2.2 628,875 + -1.1 628,875 + -1.2 628,875 + -1.4 628,875 + -1.2 628,876 - -1.0 628,876 - -0.2 628,876 - +1.8 628,876 - -0.5 628,879 + +0.2 628,879 + -1.6 628,879 + -0.2 628,879 + -1.2 628,879 + -1.5 628,880 - -1.2 628,880 - +0.8 628,880 - +0.2 628,880 - +1.1 628,880 - -1.4 628,880 - -1.0 629,479 - AO353_02975 0.41 +1.2 629,479 - AO353_02975 0.41 +0.7 629,479 - AO353_02975 0.41 -0.4 629,482 - AO353_02975 0.42 +1.4 629,482 - AO353_02975 0.42 -0.5 629,482 - AO353_02975 0.42 +1.2 629,482 - AO353_02975 0.42 +0.0 629,482 - AO353_02975 0.42 +1.5 629,482 - AO353_02975 0.42 +1.1 629,482 - AO353_02975 0.42 -0.2
Or see this region's nucleotide sequence