Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02805 and AO353_02810 are separated by 30 nucleotides AO353_02810 and AO353_02815 overlap by 4 nucleotides AO353_02815 and AO353_02820 are separated by 239 nucleotides
AO353_02805: AO353_02805 - AraC family transcriptional regulator, at 594,667 to 595,665
_02805
AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042
_02810
AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716
_02815
AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747
_02820
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 594.733 kb on + strand at 594.734 kb on - strand at 594.862 kb on + strand, within AO353_02805 at 594.863 kb on - strand, within AO353_02805 at 594.966 kb on - strand, within AO353_02805 at 594.966 kb on - strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.968 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.973 kb on + strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.974 kb on - strand, within AO353_02805 at 594.975 kb on + strand, within AO353_02805 at 594.975 kb on + strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.976 kb on - strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.980 kb on + strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 594.981 kb on - strand, within AO353_02805 at 595.163 kb on - strand, within AO353_02805 at 595.190 kb on - strand, within AO353_02805 at 595.190 kb on - strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.290 kb on + strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.291 kb on - strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.370 kb on + strand, within AO353_02805 at 595.371 kb on - strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.528 kb on + strand, within AO353_02805 at 595.529 kb on - strand, within AO353_02805 at 595.529 kb on - strand, within AO353_02805 at 595.663 kb on + strand at 595.663 kb on + strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.664 kb on - strand at 595.770 kb on - strand at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.024 kb on + strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.025 kb on - strand, within AO353_02810 at 596.148 kb on + strand, within AO353_02810 at 596.148 kb on + strand, within AO353_02810 at 596.149 kb on - strand, within AO353_02810 at 596.175 kb on - strand, within AO353_02810 at 596.543 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.579 kb on + strand, within AO353_02810 at 596.607 kb on + strand, within AO353_02810 at 596.626 kb on - strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.654 kb on + strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.655 kb on - strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.789 kb on + strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.790 kb on - strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.795 kb on + strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.796 kb on - strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 596.887 kb on + strand, within AO353_02810 at 597.064 kb on + strand at 597.064 kb on + strand at 597.065 kb on - strand at 597.238 kb on + strand, within AO353_02815 at 597.238 kb on + strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.239 kb on - strand, within AO353_02815 at 597.260 kb on - strand, within AO353_02815 at 597.350 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.424 kb on + strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand at 597.425 kb on - strand, within AO353_02815 at 597.425 kb on - strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.604 kb on + strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand, within AO353_02815 at 597.605 kb on - strand at 597.605 kb on - strand, within AO353_02815 at 597.752 kb on + strand at 597.752 kb on + strand at 597.753 kb on - strand at 597.753 kb on - strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.771 kb on + strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.772 kb on - strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.774 kb on + strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.775 kb on - strand at 597.852 kb on + strand at 597.853 kb on - strand at 597.853 kb on - strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.876 kb on + strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.877 kb on - strand at 597.882 kb on - strand at 597.920 kb on + strand at 597.920 kb on + strand at 597.921 kb on - strand at 597.940 kb on + strand at 597.940 kb on + strand at 597.941 kb on - strand at 597.941 kb on - strand at 597.963 kb on + strand at 597.964 kb on - strand at 597.981 kb on + strand at 597.981 kb on + strand at 597.982 kb on - strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.034 kb on + strand at 598.035 kb on - strand at 598.035 kb on - strand at 598.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 594,733 + +0.3 594,734 - +0.1 594,862 + AO353_02805 0.20 -0.4 594,863 - AO353_02805 0.20 -0.5 594,966 - AO353_02805 0.30 -0.1 594,966 - AO353_02805 0.30 +0.9 594,968 + AO353_02805 0.30 +0.5 594,968 + AO353_02805 0.30 -1.0 594,968 + AO353_02805 0.30 +0.3 594,973 + AO353_02805 0.31 -2.0 594,973 + AO353_02805 0.31 -0.1 594,973 + AO353_02805 0.31 +0.3 594,974 - AO353_02805 0.31 +0.5 594,974 - AO353_02805 0.31 -2.2 594,974 - AO353_02805 0.31 -0.4 594,974 - AO353_02805 0.31 -0.2 594,974 - AO353_02805 0.31 -0.4 594,975 + AO353_02805 0.31 +0.8 594,975 + AO353_02805 0.31 -0.8 594,976 - AO353_02805 0.31 -0.5 594,976 - AO353_02805 0.31 -0.2 594,976 - AO353_02805 0.31 -1.4 594,976 - AO353_02805 0.31 +1.1 594,980 + AO353_02805 0.31 +0.3 594,980 + AO353_02805 0.31 -2.0 594,980 + AO353_02805 0.31 +1.3 594,980 + AO353_02805 0.31 -1.3 594,980 + AO353_02805 0.31 +0.1 594,981 - AO353_02805 0.31 -0.6 594,981 - AO353_02805 0.31 -1.3 594,981 - AO353_02805 0.31 -0.3 594,981 - AO353_02805 0.31 -1.4 594,981 - AO353_02805 0.31 -1.5 595,163 - AO353_02805 0.50 -0.1 595,190 - AO353_02805 0.52 +0.5 595,190 - AO353_02805 0.52 -1.5 595,290 + AO353_02805 0.62 -0.3 595,290 + AO353_02805 0.62 -0.4 595,290 + AO353_02805 0.62 -1.4 595,291 - AO353_02805 0.62 -0.4 595,291 - AO353_02805 0.62 -0.2 595,291 - AO353_02805 0.62 -1.4 595,370 + AO353_02805 0.70 -0.4 595,370 + AO353_02805 0.70 +0.9 595,370 + AO353_02805 0.70 +1.1 595,370 + AO353_02805 0.70 +1.8 595,371 - AO353_02805 0.70 +1.0 595,528 + AO353_02805 0.86 +0.4 595,528 + AO353_02805 0.86 +1.8 595,528 + AO353_02805 0.86 -2.1 595,529 - AO353_02805 0.86 +1.0 595,529 - AO353_02805 0.86 +0.9 595,663 + +1.8 595,663 + -0.3 595,664 - -0.2 595,664 - -1.2 595,664 - -0.4 595,664 - -0.9 595,664 - +0.5 595,664 - -1.1 595,664 - +0.7 595,664 - -1.4 595,664 - +0.2 595,770 - -0.7 596,024 + AO353_02810 0.24 -1.0 596,024 + AO353_02810 0.24 -2.0 596,024 + AO353_02810 0.24 -1.5 596,024 + AO353_02810 0.24 -1.5 596,024 + AO353_02810 0.24 -1.0 596,025 - AO353_02810 0.24 -0.8 596,025 - AO353_02810 0.24 -1.0 596,025 - AO353_02810 0.24 -1.2 596,148 + AO353_02810 0.34 -1.0 596,148 + AO353_02810 0.34 -0.2 596,149 - AO353_02810 0.34 -1.4 596,175 - AO353_02810 0.36 -0.2 596,543 + AO353_02810 0.63 -1.4 596,579 + AO353_02810 0.66 -1.4 596,579 + AO353_02810 0.66 -0.9 596,607 + AO353_02810 0.68 -1.2 596,626 - AO353_02810 0.69 -2.3 596,654 + AO353_02810 0.71 -0.2 596,654 + AO353_02810 0.71 -0.4 596,654 + AO353_02810 0.71 -1.2 596,654 + AO353_02810 0.71 +0.6 596,655 - AO353_02810 0.71 -0.2 596,655 - AO353_02810 0.71 -1.4 596,789 + AO353_02810 0.81 +0.7 596,789 + AO353_02810 0.81 -0.9 596,789 + AO353_02810 0.81 +1.7 596,789 + AO353_02810 0.81 -0.2 596,789 + AO353_02810 0.81 -1.0 596,789 + AO353_02810 0.81 -0.5 596,789 + AO353_02810 0.81 -1.6 596,789 + AO353_02810 0.81 +0.1 596,789 + AO353_02810 0.81 -0.1 596,790 - AO353_02810 0.81 -1.4 596,790 - AO353_02810 0.81 +0.4 596,790 - AO353_02810 0.81 -0.0 596,790 - AO353_02810 0.81 -1.3 596,795 + AO353_02810 0.82 -1.5 596,795 + AO353_02810 0.82 -0.7 596,795 + AO353_02810 0.82 -0.4 596,795 + AO353_02810 0.82 +0.8 596,795 + AO353_02810 0.82 -0.6 596,796 - AO353_02810 0.82 -0.8 596,796 - AO353_02810 0.82 -1.9 596,796 - AO353_02810 0.82 -0.7 596,887 + AO353_02810 0.88 -2.0 596,887 + AO353_02810 0.88 -1.0 597,064 + -0.3 597,064 + +1.0 597,065 - -0.2 597,238 + AO353_02815 0.29 +1.1 597,238 + AO353_02815 0.29 +2.2 597,239 - AO353_02815 0.29 +2.2 597,239 - AO353_02815 0.29 +1.0 597,239 - AO353_02815 0.29 +0.2 597,260 - AO353_02815 0.33 +0.0 597,350 + AO353_02815 0.46 -0.2 597,424 + AO353_02815 0.57 +0.8 597,424 + AO353_02815 0.57 +0.5 597,424 + AO353_02815 0.57 +2.5 597,425 - AO353_02815 0.57 +0.7 597,425 - +1.8 597,425 - AO353_02815 0.57 +1.2 597,425 - AO353_02815 0.57 +0.1 597,604 + AO353_02815 0.83 +1.2 597,604 + AO353_02815 0.83 +0.2 597,604 + AO353_02815 0.83 +1.2 597,605 - AO353_02815 0.83 -0.8 597,605 - AO353_02815 0.83 +2.2 597,605 - +1.2 597,605 - AO353_02815 0.83 +0.8 597,752 + +1.8 597,752 + -1.7 597,753 - -1.4 597,753 - +0.1 597,771 + -1.7 597,771 + -0.0 597,771 + +1.5 597,771 + +0.7 597,771 + +0.8 597,772 - -1.4 597,772 - +0.5 597,772 - +1.8 597,772 - +0.9 597,774 + +2.1 597,774 + +1.9 597,774 + +1.4 597,774 + -0.6 597,775 - +0.6 597,775 - -0.8 597,775 - -1.5 597,852 + +1.1 597,853 - +1.0 597,853 - -1.1 597,876 + +0.9 597,876 + +0.8 597,876 + -0.5 597,876 + +0.6 597,876 + +1.8 597,876 + +1.0 597,876 + -0.2 597,876 + -1.8 597,876 + -1.2 597,876 + -1.4 597,876 + +1.8 597,876 + +0.9 597,876 + +0.5 597,877 - -0.2 597,877 - -0.4 597,877 - +0.4 597,877 - +0.5 597,877 - +0.4 597,877 - +1.5 597,877 - +0.8 597,877 - +0.3 597,877 - +0.8 597,877 - +1.8 597,877 - -1.0 597,877 - +0.5 597,882 - -0.7 597,920 + +1.0 597,920 + +0.6 597,921 - +0.1 597,940 + +1.9 597,940 + -1.7 597,941 - +0.3 597,941 - -0.0 597,963 + +0.0 597,964 - -2.7 597,981 + +0.4 597,981 + -0.0 597,982 - -0.7 598,034 + -1.7 598,034 + -0.1 598,034 + -0.2 598,034 + -0.9 598,035 - -1.9 598,035 - +0.0 598,035 - +1.8
Or see this region's nucleotide sequence