Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02555 and AO353_02560 are separated by 18 nucleotides AO353_02560 and AO353_02565 are separated by 61 nucleotides
AO353_02555: AO353_02555 - histidine kinase, at 543,720 to 547,190
_02555
AO353_02560: AO353_02560 - recombinase RmuC, at 547,209 to 548,687
_02560
AO353_02565: AO353_02565 - hypothetical protein, at 548,749 to 549,072
_02565
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.250 kb on + strand, within AO353_02555 at 546.251 kb on - strand, within AO353_02555 at 546.599 kb on + strand, within AO353_02555 at 546.843 kb on - strand, within AO353_02555 at 546.843 kb on - strand, within AO353_02555 at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.912 kb on - strand at 546.984 kb on + strand at 547.125 kb on + strand at 547.125 kb on + strand at 547.126 kb on - strand at 547.126 kb on - strand at 547.126 kb on - strand at 547.205 kb on + strand at 547.206 kb on - strand at 547.206 kb on - strand at 547.210 kb on + strand at 547.210 kb on + strand at 547.210 kb on + strand at 547.211 kb on - strand at 547.355 kb on + strand at 547.355 kb on + strand at 547.356 kb on - strand at 547.370 kb on - strand, within AO353_02560 at 547.421 kb on + strand, within AO353_02560 at 547.422 kb on - strand, within AO353_02560 at 547.559 kb on + strand, within AO353_02560 at 547.641 kb on + strand, within AO353_02560 at 547.642 kb on - strand, within AO353_02560 at 547.642 kb on - strand, within AO353_02560 at 547.644 kb on + strand, within AO353_02560 at 547.679 kb on + strand, within AO353_02560 at 547.679 kb on + strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.713 kb on - strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.786 kb on + strand, within AO353_02560 at 547.787 kb on - strand, within AO353_02560 at 547.787 kb on - strand, within AO353_02560 at 547.840 kb on + strand, within AO353_02560 at 547.840 kb on + strand, within AO353_02560 at 547.841 kb on - strand, within AO353_02560 at 548.316 kb on + strand, within AO353_02560 at 548.360 kb on + strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.422 kb on - strand, within AO353_02560 at 548.422 kb on - strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.552 kb on + strand at 548.708 kb on + strand at 548.709 kb on - strand at 548.709 kb on - strand at 548.709 kb on - strand at 549.055 kb on + strand at 549.056 kb on - strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.109 kb on + strand at 549.109 kb on + strand at 549.109 kb on + strand at 549.110 kb on - strand at 549.129 kb on + strand at 549.159 kb on + strand at 549.319 kb on + strand at 549.376 kb on + strand at 549.376 kb on + strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.405 kb on - strand at 549.405 kb on - strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.463 kb on + strand at 549.463 kb on + strand at 549.464 kb on - strand at 549.464 kb on - strand at 549.464 kb on - strand at 549.528 kb on + strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.606 kb on - strand at 549.606 kb on - strand at 549.606 kb on - strand at 549.616 kb on - strand at 549.676 kb on + strand at 549.676 kb on + strand at 549.679 kb on + strand at 549.679 kb on + strand at 549.680 kb on - strand at 549.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 546,250 + AO353_02555 0.73 -0.1 546,251 - AO353_02555 0.73 +0.7 546,599 + AO353_02555 0.83 +0.1 546,843 - AO353_02555 0.90 -2.9 546,843 - AO353_02555 0.90 -1.2 546,909 + -0.6 546,909 + -0.4 546,909 + -1.4 546,909 + -0.3 546,909 + -0.3 546,909 + -0.7 546,909 + -1.3 546,909 + -0.7 546,909 + -0.7 546,909 + -0.3 546,910 - -0.7 546,910 - -0.0 546,910 - -0.1 546,910 - +0.7 546,910 - +0.7 546,910 - -0.1 546,910 - +0.7 546,910 - -0.1 546,910 - +0.9 546,910 - -0.1 546,912 - -0.0 546,984 + -2.3 547,125 + +0.7 547,125 + -0.7 547,126 - +0.9 547,126 - +0.3 547,126 - -0.4 547,205 + +0.4 547,206 - +0.1 547,206 - +1.2 547,210 + +0.7 547,210 + -0.4 547,210 + -1.4 547,211 - -0.4 547,355 + -0.3 547,355 + +1.0 547,356 - -2.1 547,370 - AO353_02560 0.11 +0.2 547,421 + AO353_02560 0.14 +1.0 547,422 - AO353_02560 0.14 +0.3 547,559 + AO353_02560 0.24 -0.3 547,641 + AO353_02560 0.29 -1.6 547,642 - AO353_02560 0.29 -0.6 547,642 - AO353_02560 0.29 -0.6 547,644 + AO353_02560 0.29 +0.7 547,679 + AO353_02560 0.32 -0.5 547,679 + AO353_02560 0.32 -0.1 547,680 - AO353_02560 0.32 +0.6 547,680 - AO353_02560 0.32 -0.1 547,680 - AO353_02560 0.32 -2.8 547,680 - AO353_02560 0.32 -0.1 547,681 + AO353_02560 0.32 -0.5 547,681 + AO353_02560 0.32 -1.1 547,681 + AO353_02560 0.32 +0.6 547,681 + AO353_02560 0.32 -2.4 547,681 + AO353_02560 0.32 -1.3 547,681 + AO353_02560 0.32 +3.3 547,681 + AO353_02560 0.32 -1.4 547,681 + AO353_02560 0.32 -0.7 547,681 + AO353_02560 0.32 -0.8 547,682 - AO353_02560 0.32 -0.2 547,682 - AO353_02560 0.32 -1.5 547,682 - AO353_02560 0.32 -1.4 547,682 - AO353_02560 0.32 -0.7 547,682 - AO353_02560 0.32 +0.3 547,682 - AO353_02560 0.32 -0.5 547,682 - AO353_02560 0.32 -1.6 547,682 - AO353_02560 0.32 -0.7 547,682 - AO353_02560 0.32 -0.3 547,682 - AO353_02560 0.32 -1.4 547,713 - AO353_02560 0.34 -1.4 547,777 + AO353_02560 0.38 -1.1 547,777 + AO353_02560 0.38 +0.1 547,777 + AO353_02560 0.38 -0.8 547,777 + AO353_02560 0.38 -0.4 547,778 - AO353_02560 0.38 -0.1 547,778 - AO353_02560 0.38 +1.1 547,778 - AO353_02560 0.38 -1.7 547,778 - AO353_02560 0.38 +0.9 547,778 - AO353_02560 0.38 -0.3 547,778 - AO353_02560 0.38 -0.5 547,778 - AO353_02560 0.38 +0.6 547,778 - AO353_02560 0.38 +0.2 547,786 + AO353_02560 0.39 +0.2 547,787 - AO353_02560 0.39 -0.7 547,787 - AO353_02560 0.39 -1.4 547,840 + AO353_02560 0.43 -2.0 547,840 + AO353_02560 0.43 +2.0 547,841 - AO353_02560 0.43 -0.6 548,316 + AO353_02560 0.75 +1.3 548,360 + AO353_02560 0.78 +0.6 548,361 - AO353_02560 0.78 +0.2 548,361 - AO353_02560 0.78 +0.3 548,361 - AO353_02560 0.78 -0.6 548,361 - AO353_02560 0.78 -0.5 548,421 + AO353_02560 0.82 +1.4 548,421 + AO353_02560 0.82 -1.7 548,421 + AO353_02560 0.82 -1.4 548,422 - AO353_02560 0.82 -0.8 548,422 - AO353_02560 0.82 -0.5 548,424 + AO353_02560 0.82 -0.6 548,424 + AO353_02560 0.82 -2.7 548,424 + AO353_02560 0.82 +1.0 548,424 + AO353_02560 0.82 +1.3 548,425 - AO353_02560 0.82 +1.1 548,425 - AO353_02560 0.82 -0.1 548,425 - AO353_02560 0.82 +0.3 548,552 + +1.7 548,708 + -0.3 548,709 - +0.3 548,709 - -0.8 548,709 - +1.3 549,055 + +0.8 549,056 - +0.7 549,072 + -0.1 549,072 + -0.3 549,073 - -0.3 549,073 - -0.6 549,109 + -2.3 549,109 + -1.2 549,109 + +0.0 549,110 - -0.0 549,129 + -0.9 549,159 + -1.0 549,319 + +1.2 549,376 + +0.1 549,376 + +0.7 549,377 - -1.7 549,377 - +1.2 549,377 - -1.3 549,377 - +0.1 549,377 - -1.3 549,404 + +2.0 549,404 + +0.0 549,404 + -0.3 549,404 + -1.1 549,405 - -0.3 549,405 - -3.0 549,406 + +0.3 549,406 + -1.1 549,406 + +0.2 549,406 + -0.6 549,406 + -0.6 549,406 + +1.2 549,406 + -1.2 549,406 + +0.7 549,406 + -0.5 549,407 - -0.6 549,407 - -0.5 549,407 - +2.2 549,407 - -2.1 549,407 - +0.6 549,463 + +0.2 549,463 + +1.7 549,464 - -0.3 549,464 - +0.7 549,464 - -0.6 549,528 + -0.3 549,529 - -1.4 549,529 - +1.5 549,529 - -1.6 549,529 - -0.4 549,605 + -1.1 549,605 + +0.2 549,605 + +0.7 549,605 + -1.6 549,605 + -0.1 549,605 + +0.2 549,606 - -0.5 549,606 - +0.8 549,606 - -0.6 549,616 - +1.2 549,676 + +0.1 549,676 + +0.1 549,679 + +1.0 549,679 + -0.4 549,680 - -0.6 549,680 - +1.2
Or see this region's nucleotide sequence