Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02320 and AO353_02325 overlap by 4 nucleotides AO353_02325 and AO353_02330 are separated by 89 nucleotides AO353_02330 and AO353_02335 are separated by 121 nucleotides AO353_02335 and AO353_02340 are separated by 51 nucleotides
AO353_02320: AO353_02320 - allantoinase, at 493,453 to 494,379
_02320
AO353_02325: AO353_02325 - OHCU decarboxylase, at 494,376 to 494,891
_02325
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601
_02335
AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960
_02340
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 494.003 kb on - strand, within AO353_02320 at 494.003 kb on - strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.019 kb on - strand, within AO353_02320 at 494.083 kb on + strand, within AO353_02320 at 494.084 kb on - strand, within AO353_02320 at 494.150 kb on - strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.156 kb on - strand, within AO353_02320 at 494.182 kb on + strand, within AO353_02320 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.669 kb on + strand, within AO353_02325 at 494.724 kb on + strand, within AO353_02325 at 494.762 kb on - strand, within AO353_02325 at 494.878 kb on + strand at 494.959 kb on + strand at 494.959 kb on + strand at 494.960 kb on - strand at 494.960 kb on - strand at 494.963 kb on + strand at 494.963 kb on + strand at 494.964 kb on - strand at 494.990 kb on + strand at 494.990 kb on + strand at 494.991 kb on - strand at 494.991 kb on - strand at 494.997 kb on + strand at 494.997 kb on + strand at 494.998 kb on - strand at 495.189 kb on - strand, within AO353_02330 at 495.270 kb on - strand, within AO353_02330 at 495.435 kb on - strand, within AO353_02330 at 495.467 kb on + strand, within AO353_02330 at 495.468 kb on - strand, within AO353_02330 at 495.616 kb on + strand, within AO353_02330 at 495.617 kb on - strand, within AO353_02330 at 495.955 kb on - strand at 495.955 kb on - strand at 495.974 kb on + strand at 495.974 kb on + strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 496.019 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.051 kb on - strand at 496.051 kb on - strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.405 kb on + strand, within AO353_02335 at 496.406 kb on - strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.456 kb on - strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.645 kb on + strand at 496.646 kb on - strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.830 kb on + strand, within AO353_02340 at 496.830 kb on + strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.845 kb on + strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.948 kb on - strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.966 kb on - strand, within AO353_02340
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 494,003 - AO353_02320 0.59 +0.9 494,003 - AO353_02320 0.59 +0.1 494,017 + AO353_02320 0.61 +0.7 494,017 + AO353_02320 0.61 +1.0 494,018 - AO353_02320 0.61 -0.1 494,018 - AO353_02320 0.61 -0.7 494,018 - AO353_02320 0.61 -2.0 494,018 - AO353_02320 0.61 +0.6 494,018 - AO353_02320 0.61 -1.3 494,018 - AO353_02320 0.61 -0.5 494,018 - AO353_02320 0.61 -0.9 494,019 - AO353_02320 0.61 +0.4 494,083 + AO353_02320 0.68 +0.3 494,084 - AO353_02320 0.68 -0.1 494,150 - AO353_02320 0.75 -0.9 494,155 + AO353_02320 0.76 -0.7 494,155 + AO353_02320 0.76 +1.0 494,156 - AO353_02320 0.76 -0.6 494,182 + AO353_02320 0.79 -1.2 494,448 + AO353_02325 0.14 +3.0 494,448 + AO353_02325 0.14 -1.3 494,448 + AO353_02325 0.14 +0.1 494,448 + AO353_02325 0.14 +0.5 494,448 + AO353_02325 0.14 +0.5 494,448 + AO353_02325 0.14 -0.5 494,448 + AO353_02325 0.14 +0.0 494,449 - AO353_02325 0.14 +0.5 494,449 - AO353_02325 0.14 +0.7 494,449 - AO353_02325 0.14 -0.9 494,449 - AO353_02325 0.14 -1.6 494,449 - AO353_02325 0.14 +1.0 494,449 - AO353_02325 0.14 -1.0 494,449 - AO353_02325 0.14 -0.9 494,669 + AO353_02325 0.57 -1.1 494,724 + AO353_02325 0.67 -2.6 494,762 - AO353_02325 0.75 +0.4 494,878 + -0.1 494,959 + -0.8 494,959 + +0.6 494,960 - +0.6 494,960 - -0.9 494,963 + +0.3 494,963 + -0.6 494,964 - -0.2 494,990 + +1.1 494,990 + +0.4 494,991 - +0.3 494,991 - +0.3 494,997 + -2.3 494,997 + +0.1 494,998 - -0.8 495,189 - AO353_02330 0.21 -0.9 495,270 - AO353_02330 0.29 -0.6 495,435 - AO353_02330 0.46 -0.9 495,467 + AO353_02330 0.49 -0.7 495,468 - AO353_02330 0.49 -0.6 495,616 + AO353_02330 0.64 -0.1 495,617 - AO353_02330 0.64 -0.1 495,955 - +0.0 495,955 - -0.2 495,974 + -1.5 495,974 + +2.0 495,975 - -0.2 495,975 - -0.1 495,975 - +0.5 495,975 - -0.6 495,975 - +0.8 495,975 - +0.2 495,975 - -2.5 495,988 + -0.3 495,988 + +0.1 495,988 + +0.5 495,988 + +1.0 495,988 + -1.1 495,988 + -1.7 495,988 + +0.5 495,989 - +0.1 495,989 - -0.9 495,989 - -0.7 495,989 - +0.3 495,989 - -0.6 495,989 - +0.1 495,989 - -0.9 496,019 + -2.1 496,050 + -0.7 496,050 + +0.7 496,050 + +0.7 496,050 + -0.3 496,050 + +0.4 496,050 + -0.5 496,051 - +1.5 496,051 - +0.8 496,083 + -0.5 496,083 + -3.0 496,083 + -0.9 496,083 + -1.5 496,083 + -0.7 496,083 + +0.2 496,083 + -2.1 496,083 + -1.3 496,083 + +1.6 496,083 + -2.7 496,084 - +0.5 496,084 - -1.7 496,084 - +0.3 496,084 - +0.9 496,084 - +0.5 496,084 - -0.3 496,084 - +0.5 496,084 - -0.6 496,084 - -0.3 496,084 - +0.2 496,084 - +0.5 496,084 - +0.7 496,084 - +0.9 496,405 + AO353_02335 0.61 +0.2 496,406 - AO353_02335 0.61 -1.6 496,451 + AO353_02335 0.70 -0.9 496,451 + AO353_02335 0.70 -1.8 496,451 + AO353_02335 0.70 -0.0 496,451 + AO353_02335 0.70 +0.9 496,451 + AO353_02335 0.70 +0.9 496,452 - AO353_02335 0.70 -0.6 496,452 - AO353_02335 0.70 -0.2 496,452 - AO353_02335 0.70 +1.1 496,452 - AO353_02335 0.70 +0.1 496,455 + AO353_02335 0.71 +0.4 496,455 + AO353_02335 0.71 -1.4 496,455 + AO353_02335 0.71 -1.7 496,455 + AO353_02335 0.71 -0.3 496,456 - AO353_02335 0.71 +0.4 496,541 + AO353_02335 0.88 +2.2 496,541 + AO353_02335 0.88 +0.1 496,542 - AO353_02335 0.88 +0.1 496,542 - AO353_02335 0.88 +1.9 496,542 - AO353_02335 0.88 +0.7 496,542 - AO353_02335 0.88 -1.1 496,542 - AO353_02335 0.88 -0.3 496,542 - AO353_02335 0.88 +1.3 496,599 + -0.1 496,599 + +0.5 496,599 + +0.3 496,599 + -0.9 496,600 - +1.0 496,600 - +1.7 496,600 - +0.4 496,645 + +1.7 496,646 - +0.5 496,740 + -0.2 496,740 + -0.9 496,740 + +1.1 496,740 + -0.9 496,741 - -1.7 496,741 - -2.5 496,741 - +0.5 496,741 - -2.2 496,741 - -0.8 496,830 + AO353_02340 0.14 -0.8 496,830 + AO353_02340 0.14 +0.5 496,831 - AO353_02340 0.14 -0.4 496,831 - AO353_02340 0.14 -1.1 496,831 - AO353_02340 0.14 +0.1 496,831 - AO353_02340 0.14 -0.3 496,831 - AO353_02340 0.14 +0.9 496,845 + AO353_02340 0.15 +0.1 496,846 - AO353_02340 0.15 -0.9 496,846 - AO353_02340 0.15 +1.1 496,902 + AO353_02340 0.19 +1.0 496,902 + AO353_02340 0.19 +0.4 496,902 + AO353_02340 0.19 -0.3 496,902 + AO353_02340 0.19 -0.2 496,903 - AO353_02340 0.19 +0.4 496,903 - AO353_02340 0.19 +0.1 496,903 - AO353_02340 0.19 -2.2 496,903 - AO353_02340 0.19 -1.7 496,903 - AO353_02340 0.19 +0.1 496,903 - AO353_02340 0.19 +1.5 496,947 + AO353_02340 0.22 +0.4 496,947 + AO353_02340 0.22 -1.3 496,948 - AO353_02340 0.23 +1.1 496,965 + AO353_02340 0.24 -0.6 496,965 + AO353_02340 0.24 +0.4 496,965 + AO353_02340 0.24 -0.5 496,965 + AO353_02340 0.24 -0.2 496,966 - AO353_02340 0.24 +1.5
Or see this region's nucleotide sequence