Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02280 and AO353_02285 are separated by 77 nucleotides AO353_02285 and AO353_02290 are separated by 103 nucleotides AO353_02290 and AO353_02295 are separated by 194 nucleotides
AO353_02280: AO353_02280 - DNA mismatch repair protein MutS, at 486,512 to 487,069
_02280
AO353_02285: AO353_02285 - GTP cyclohydrolase, at 487,147 to 487,692
_02285
AO353_02290: AO353_02290 - glutaredoxin, at 487,796 to 488,167
_02290
AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528
_02295
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 487.025 kb on + strand at 487.025 kb on + strand at 487.025 kb on + strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.067 kb on + strand at 487.067 kb on + strand at 487.068 kb on - strand at 487.068 kb on - strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.701 kb on - strand at 487.754 kb on + strand at 487.755 kb on - strand at 487.755 kb on - strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.800 kb on + strand at 487.800 kb on + strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.804 kb on - strand at 487.804 kb on - strand at 487.932 kb on - strand, within AO353_02290 at 487.932 kb on - strand, within AO353_02290 at 488.104 kb on + strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.138 kb on + strand at 488.138 kb on + strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.217 kb on - strand at 488.217 kb on - strand at 488.262 kb on + strand at 488.304 kb on + strand at 488.305 kb on - strand at 488.320 kb on + strand at 488.343 kb on - strand at 488.343 kb on - strand at 488.352 kb on + strand at 488.352 kb on + strand at 488.395 kb on + strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.412 kb on + strand at 488.448 kb on + strand at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.512 kb on - strand, within AO353_02295 at 488.605 kb on + strand at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.825 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 486,906 + AO353_02280 0.71 -0.1 486,906 + AO353_02280 0.71 +1.1 486,906 + AO353_02280 0.71 +0.3 486,906 + AO353_02280 0.71 +0.3 487,025 + +0.7 487,025 + -0.8 487,025 + -0.6 487,026 - -0.1 487,026 - -1.8 487,026 - +0.4 487,026 - +0.7 487,026 - +1.4 487,067 + -0.1 487,067 + -0.3 487,068 - -0.9 487,068 - +0.2 487,690 + +1.4 487,690 + +1.3 487,690 + +0.1 487,690 + +0.1 487,691 - -1.0 487,691 - +1.1 487,691 - -0.3 487,701 - +0.1 487,754 + -0.9 487,755 - +0.1 487,755 - +0.3 487,790 + -2.1 487,790 + -0.2 487,790 + +0.9 487,790 + +1.2 487,790 + -0.9 487,790 + -0.1 487,790 + -0.3 487,790 + -0.3 487,790 + -1.4 487,791 - +0.3 487,791 - -0.5 487,791 - -0.4 487,791 - -0.0 487,791 - -0.0 487,791 - -0.2 487,791 - +0.1 487,791 - -1.5 487,791 - -3.0 487,791 - -1.4 487,791 - -0.6 487,791 - +0.6 487,792 + +0.4 487,792 + +0.3 487,792 + +2.0 487,792 + +0.1 487,793 - +0.2 487,793 - +0.4 487,793 - -0.4 487,800 + +1.7 487,800 + -0.8 487,801 - -0.1 487,801 - +0.7 487,801 - +0.3 487,804 - -0.5 487,804 - -0.6 487,932 - AO353_02290 0.37 -1.7 487,932 - AO353_02290 0.37 -1.5 488,104 + AO353_02290 0.83 -1.1 488,105 - AO353_02290 0.83 -0.0 488,105 - AO353_02290 0.83 -0.4 488,114 + AO353_02290 0.85 +0.0 488,114 + AO353_02290 0.85 -2.5 488,114 + AO353_02290 0.85 -0.7 488,114 + AO353_02290 0.85 -0.5 488,114 + AO353_02290 0.85 +1.0 488,114 + AO353_02290 0.85 +0.7 488,114 + AO353_02290 0.85 -1.4 488,114 + AO353_02290 0.85 +0.3 488,114 + AO353_02290 0.85 -1.1 488,114 + AO353_02290 0.85 +0.2 488,114 + AO353_02290 0.85 +1.2 488,114 + AO353_02290 0.85 -2.2 488,114 + AO353_02290 0.85 -0.6 488,114 + AO353_02290 0.85 +0.1 488,115 - AO353_02290 0.86 -2.3 488,115 - AO353_02290 0.86 -1.1 488,115 - AO353_02290 0.86 -1.8 488,115 - AO353_02290 0.86 -2.1 488,115 - AO353_02290 0.86 +0.3 488,115 - AO353_02290 0.86 -1.7 488,115 - AO353_02290 0.86 -0.2 488,115 - AO353_02290 0.86 -0.3 488,115 - AO353_02290 0.86 -1.3 488,115 - AO353_02290 0.86 -1.5 488,138 + -0.3 488,138 + -0.4 488,139 - -0.3 488,139 - -1.6 488,139 - +0.4 488,216 + +0.3 488,216 + +0.6 488,216 + +0.0 488,216 + -2.1 488,217 - -1.3 488,217 - -0.4 488,262 + -1.1 488,304 + -0.1 488,305 - -1.8 488,320 + -1.3 488,343 - +0.1 488,343 - -2.1 488,352 + +1.8 488,352 + -0.5 488,395 + +1.0 488,396 - -0.5 488,396 - +0.1 488,396 - -0.1 488,412 + +0.6 488,448 + +0.4 488,511 + AO353_02295 0.13 +0.9 488,511 + AO353_02295 0.13 -0.5 488,511 + AO353_02295 0.13 -0.5 488,512 - AO353_02295 0.13 +1.7 488,605 + +0.7 488,605 + AO353_02295 0.21 +0.1 488,605 + AO353_02295 0.21 +0.3 488,605 + AO353_02295 0.21 +0.4 488,605 + AO353_02295 0.21 -0.5 488,825 + AO353_02295 0.40 +0.8 488,873 + AO353_02295 0.44 +1.1 488,873 + AO353_02295 0.44 +0.4 488,874 - AO353_02295 0.44 -0.5 488,874 - AO353_02295 0.44 -1.2 488,874 - AO353_02295 0.44 -1.2 488,874 - AO353_02295 0.44 +0.4 489,021 - AO353_02295 0.56 -0.1 489,021 - AO353_02295 0.56 +0.7 489,059 + AO353_02295 0.60 +0.5 489,059 + AO353_02295 0.60 +0.5 489,059 + AO353_02295 0.60 +1.5 489,059 + AO353_02295 0.60 -0.3 489,060 - AO353_02295 0.60 +0.3 489,060 - AO353_02295 0.60 +0.6 489,060 - AO353_02295 0.60 -0.0 489,060 - AO353_02295 0.60 -0.6
Or see this region's nucleotide sequence