Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02225 and AO353_02230 are separated by 245 nucleotides AO353_02230 and AO353_02235 are separated by 4 nucleotides AO353_02235 and AO353_02240 are separated by 100 nucleotides AO353_02240 and AO353_02245 overlap by 4 nucleotides
AO353_02225: AO353_02225 - LuxR family transcriptional regulator, at 477,362 to 477,595
_02225
AO353_02230: AO353_02230 - haloacid dehalogenase, at 477,841 to 478,524
_02230
AO353_02235: AO353_02235 - acireductone dioxygenase, at 478,529 to 479,074
_02235
AO353_02240: AO353_02240 - methylthioribulose-1-phosphate dehydratase, at 479,175 to 479,795
_02240
AO353_02245: AO353_02245 - MFS transporter, at 479,792 to 480,937
_02245
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.652 kb on - strand at 477.665 kb on + strand at 477.665 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.705 kb on - strand at 477.705 kb on - strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.736 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.762 kb on + strand at 477.763 kb on - strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 478.707 kb on + strand, within AO353_02235 at 478.708 kb on - strand, within AO353_02235 at 478.708 kb on - strand, within AO353_02235 at 478.708 kb on - strand, within AO353_02235 at 478.708 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.714 kb on - strand, within AO353_02235 at 478.733 kb on - strand, within AO353_02235 at 478.838 kb on - strand, within AO353_02235 at 478.863 kb on + strand, within AO353_02235 at 478.864 kb on - strand, within AO353_02235 at 478.864 kb on - strand, within AO353_02235 at 478.864 kb on - strand, within AO353_02235 at 478.864 kb on - strand, within AO353_02235 at 478.864 kb on - strand, within AO353_02235 at 479.115 kb on - strand at 479.163 kb on + strand at 479.163 kb on + strand at 479.169 kb on + strand at 479.169 kb on + strand at 479.169 kb on + strand at 479.169 kb on + strand at 479.170 kb on - strand at 479.170 kb on - strand at 479.170 kb on - strand at 479.170 kb on - strand at 479.275 kb on + strand, within AO353_02240 at 479.275 kb on + strand, within AO353_02240 at 479.275 kb on + strand, within AO353_02240 at 479.275 kb on + strand, within AO353_02240 at 479.276 kb on - strand, within AO353_02240 at 479.276 kb on - strand, within AO353_02240 at 479.440 kb on + strand, within AO353_02240 at 479.440 kb on + strand, within AO353_02240 at 479.441 kb on - strand, within AO353_02240 at 479.441 kb on - strand, within AO353_02240 at 479.453 kb on + strand, within AO353_02240 at 479.453 kb on + strand, within AO353_02240 at 479.454 kb on - strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.540 kb on + strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.541 kb on - strand, within AO353_02240 at 479.542 kb on + strand, within AO353_02240 at 479.542 kb on + strand, within AO353_02240 at 479.542 kb on + strand, within AO353_02240 at 479.542 kb on + strand, within AO353_02240 at 479.542 kb on + strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.543 kb on - strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand, within AO353_02240 at 479.544 kb on + strand at 479.545 kb on - strand, within AO353_02240 at 479.545 kb on - strand, within AO353_02240 at 479.545 kb on - strand, within AO353_02240 at 479.545 kb on - strand, within AO353_02240 at 479.609 kb on + strand, within AO353_02240 at 479.609 kb on + strand, within AO353_02240 at 479.609 kb on + strand, within AO353_02240 at 479.609 kb on + strand, within AO353_02240 at 479.610 kb on - strand, within AO353_02240 at 479.610 kb on - strand, within AO353_02240 at 479.610 kb on - strand, within AO353_02240 at 479.610 kb on - strand, within AO353_02240 at 479.701 kb on + strand, within AO353_02240 at 479.701 kb on + strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.702 kb on - strand, within AO353_02240 at 479.737 kb on + strand at 479.737 kb on + strand at 479.737 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.812 kb on + strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.813 kb on - strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.863 kb on + strand at 479.863 kb on + strand at 479.863 kb on + strand at 479.863 kb on + strand at 479.863 kb on + strand at 479.864 kb on - strand at 479.864 kb on - strand at 479.864 kb on - strand at 479.864 kb on - strand at 479.875 kb on + strand at 479.876 kb on - strand at 479.907 kb on + strand, within AO353_02245 at 479.907 kb on + strand, within AO353_02245 at 479.908 kb on - strand, within AO353_02245 at 479.908 kb on - strand, within AO353_02245 at 479.908 kb on - strand, within AO353_02245 at 479.949 kb on + strand, within AO353_02245 at 479.949 kb on + strand, within AO353_02245 at 479.950 kb on - strand, within AO353_02245 at 479.950 kb on - strand, within AO353_02245 at 479.950 kb on - strand, within AO353_02245 at 479.950 kb on - strand, within AO353_02245 at 479.950 kb on - strand, within AO353_02245 at 479.989 kb on + strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245 at 479.990 kb on - strand, within AO353_02245
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 477,599 + +0.4 477,599 + +0.6 477,599 + -1.3 477,599 + -0.9 477,652 - +1.0 477,665 + +0.1 477,665 + -1.6 477,680 + +1.1 477,680 + +1.0 477,680 + -2.3 477,680 + +0.7 477,680 + -0.3 477,681 - -1.1 477,681 - +0.8 477,681 - +0.0 477,696 + -1.8 477,696 + +1.1 477,696 + +0.2 477,696 + -0.5 477,696 + +0.4 477,697 - -0.6 477,697 - -1.4 477,697 - +0.7 477,697 - +0.2 477,704 + -0.9 477,704 + -0.6 477,704 + -1.4 477,704 + -0.3 477,705 - +0.1 477,705 - -1.5 477,735 + +0.7 477,735 + +0.7 477,735 + -1.3 477,736 - -2.3 477,754 - -1.4 477,754 - -0.9 477,754 - +0.8 477,762 + -0.3 477,763 - -0.3 477,787 + -2.0 477,787 + +0.8 477,787 + -1.1 477,788 - +0.7 477,788 - +1.3 477,788 - -0.8 477,788 - -0.0 477,788 - +0.4 477,788 - +0.4 478,707 + AO353_02235 0.33 -1.5 478,708 - AO353_02235 0.33 -0.8 478,708 - AO353_02235 0.33 -1.5 478,708 - AO353_02235 0.33 +0.2 478,708 - AO353_02235 0.33 -0.6 478,714 - AO353_02235 0.34 -0.6 478,714 - AO353_02235 0.34 +1.7 478,714 - AO353_02235 0.34 -1.3 478,714 - AO353_02235 0.34 -1.7 478,714 - AO353_02235 0.34 -1.6 478,714 - AO353_02235 0.34 -0.2 478,733 - AO353_02235 0.37 -0.3 478,838 - AO353_02235 0.57 -0.9 478,863 + AO353_02235 0.61 -1.3 478,864 - AO353_02235 0.61 +0.5 478,864 - AO353_02235 0.61 +0.7 478,864 - AO353_02235 0.61 -0.2 478,864 - AO353_02235 0.61 -1.1 478,864 - AO353_02235 0.61 -0.1 479,115 - -1.1 479,163 + +0.1 479,163 + -1.5 479,169 + -1.2 479,169 + -0.6 479,169 + -1.0 479,169 + -1.0 479,170 - -0.3 479,170 - +0.9 479,170 - -0.6 479,170 - +0.2 479,275 + AO353_02240 0.16 -2.7 479,275 + AO353_02240 0.16 -0.1 479,275 + AO353_02240 0.16 +0.5 479,275 + AO353_02240 0.16 -2.0 479,276 - AO353_02240 0.16 -1.5 479,276 - AO353_02240 0.16 +0.7 479,440 + AO353_02240 0.43 -0.5 479,440 + AO353_02240 0.43 +1.7 479,441 - AO353_02240 0.43 +0.1 479,441 - AO353_02240 0.43 +2.3 479,453 + AO353_02240 0.45 +0.7 479,453 + AO353_02240 0.45 -1.4 479,454 - AO353_02240 0.45 +0.4 479,540 + AO353_02240 0.59 -1.3 479,540 + AO353_02240 0.59 -3.1 479,540 + AO353_02240 0.59 -0.4 479,540 + AO353_02240 0.59 -0.6 479,540 + AO353_02240 0.59 +0.1 479,540 + AO353_02240 0.59 -0.4 479,540 + AO353_02240 0.59 +0.9 479,540 + AO353_02240 0.59 -0.4 479,540 + AO353_02240 0.59 -1.8 479,540 + AO353_02240 0.59 +0.7 479,540 + AO353_02240 0.59 +0.6 479,541 - AO353_02240 0.59 +0.0 479,541 - AO353_02240 0.59 -0.9 479,541 - +1.1 479,541 - AO353_02240 0.59 +0.6 479,541 - AO353_02240 0.59 -1.6 479,541 - AO353_02240 0.59 +0.9 479,541 - AO353_02240 0.59 +0.9 479,541 - AO353_02240 0.59 -0.6 479,541 - AO353_02240 0.59 +0.1 479,541 - AO353_02240 0.59 +1.4 479,541 - AO353_02240 0.59 +0.2 479,542 + AO353_02240 0.59 +2.2 479,542 + AO353_02240 0.59 -0.6 479,542 + AO353_02240 0.59 +0.9 479,542 + AO353_02240 0.59 +1.3 479,542 + AO353_02240 0.59 -0.2 479,543 - AO353_02240 0.59 +1.1 479,543 - AO353_02240 0.59 +0.7 479,543 - AO353_02240 0.59 +1.7 479,543 - AO353_02240 0.59 -0.3 479,543 - AO353_02240 0.59 +0.3 479,543 - AO353_02240 0.59 -0.9 479,543 - AO353_02240 0.59 -1.3 479,543 - AO353_02240 0.59 -0.3 479,544 + AO353_02240 0.59 -0.6 479,544 + AO353_02240 0.59 -0.1 479,544 + AO353_02240 0.59 -0.2 479,544 + AO353_02240 0.59 -0.1 479,544 + AO353_02240 0.59 +0.2 479,544 + AO353_02240 0.59 -0.3 479,544 + -0.9 479,545 - AO353_02240 0.60 -0.8 479,545 - AO353_02240 0.60 +0.4 479,545 - AO353_02240 0.60 -0.0 479,545 - AO353_02240 0.60 -0.3 479,609 + AO353_02240 0.70 -0.2 479,609 + AO353_02240 0.70 -0.8 479,609 + AO353_02240 0.70 +1.1 479,609 + AO353_02240 0.70 -1.4 479,610 - AO353_02240 0.70 +0.4 479,610 - AO353_02240 0.70 -0.3 479,610 - AO353_02240 0.70 -0.8 479,610 - AO353_02240 0.70 -1.9 479,701 + AO353_02240 0.85 -0.2 479,701 + AO353_02240 0.85 -0.0 479,702 - AO353_02240 0.85 -0.5 479,702 - AO353_02240 0.85 -1.3 479,702 - AO353_02240 0.85 -0.0 479,702 - AO353_02240 0.85 +0.9 479,702 - AO353_02240 0.85 -1.3 479,702 - AO353_02240 0.85 -0.8 479,702 - AO353_02240 0.85 -1.5 479,702 - AO353_02240 0.85 +1.9 479,737 + -0.3 479,737 + -0.4 479,737 + +0.2 479,812 + +0.0 479,812 + +1.0 479,812 + -0.5 479,812 + -0.1 479,812 + +0.3 479,812 + +0.1 479,812 + -0.3 479,812 + -0.6 479,812 + -1.6 479,812 + +0.1 479,812 + +1.0 479,812 + +0.7 479,812 + -0.9 479,813 - -0.2 479,813 - -0.2 479,813 - +1.2 479,813 - +0.2 479,813 - -0.9 479,813 - -1.0 479,813 - -0.4 479,813 - -0.3 479,860 + -2.7 479,860 + +1.5 479,863 + -0.5 479,863 + -0.6 479,863 + -1.5 479,863 + -1.6 479,863 + -1.3 479,864 - -0.3 479,864 - -0.5 479,864 - -1.6 479,864 - +0.1 479,875 + +1.3 479,876 - +0.5 479,907 + AO353_02245 0.10 +1.0 479,907 + AO353_02245 0.10 +0.4 479,908 - AO353_02245 0.10 +2.7 479,908 - AO353_02245 0.10 +1.9 479,908 - AO353_02245 0.10 +0.1 479,949 + AO353_02245 0.14 -1.2 479,949 + AO353_02245 0.14 -1.4 479,950 - AO353_02245 0.14 -3.1 479,950 - AO353_02245 0.14 -2.0 479,950 - AO353_02245 0.14 -0.9 479,950 - AO353_02245 0.14 +0.4 479,950 - AO353_02245 0.14 -0.6 479,989 + AO353_02245 0.17 -0.7 479,990 - AO353_02245 0.17 +0.3 479,990 - AO353_02245 0.17 -0.8 479,990 - AO353_02245 0.17 +1.0
Or see this region's nucleotide sequence