Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02185 and AO353_02190 are separated by 222 nucleotides AO353_02190 and AO353_02195 are separated by 314 nucleotides
AO353_02185: AO353_02185 - short-chain dehydrogenase, at 468,519 to 469,334
_02185
AO353_02190: AO353_02190 - hypothetical protein, at 469,557 to 471,650
_02190
AO353_02195: AO353_02195 - spermidine synthase, at 471,965 to 472,840
_02195
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 468.580 kb on + strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.690 kb on - strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.950 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.148 kb on - strand, within AO353_02185 at 469.377 kb on - strand at 469.547 kb on + strand at 469.547 kb on + strand at 469.558 kb on + strand at 469.558 kb on + strand at 469.558 kb on + strand at 469.709 kb on - strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.837 kb on - strand, within AO353_02190 at 469.837 kb on - strand, within AO353_02190 at 469.837 kb on - strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.078 kb on - strand, within AO353_02190 at 470.078 kb on - strand, within AO353_02190 at 470.206 kb on + strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.426 kb on - strand, within AO353_02190 at 470.426 kb on - strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.447 kb on + strand, within AO353_02190 at 470.512 kb on + strand, within AO353_02190 at 470.513 kb on - strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.559 kb on - strand, within AO353_02190 at 470.559 kb on - strand, within AO353_02190 at 470.570 kb on + strand, within AO353_02190 at 470.571 kb on - strand, within AO353_02190 at 470.624 kb on + strand, within AO353_02190 at 470.624 kb on + strand, within AO353_02190 at 470.746 kb on + strand, within AO353_02190 at 470.786 kb on + strand, within AO353_02190 at 470.786 kb on + strand, within AO353_02190 at 470.787 kb on - strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.957 kb on - strand, within AO353_02190 at 470.957 kb on - strand at 470.957 kb on - strand, within AO353_02190 at 470.957 kb on - strand, within AO353_02190 at 471.066 kb on + strand, within AO353_02190 at 471.202 kb on + strand, within AO353_02190 at 471.203 kb on - strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.400 kb on - strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.571 kb on + strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.629 kb on + strand at 471.630 kb on - strand at 471.657 kb on + strand at 471.658 kb on - strand at 471.659 kb on + strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.719 kb on + strand at 471.719 kb on + strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.792 kb on + strand at 471.792 kb on + strand at 471.793 kb on - strand at 471.861 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.916 kb on + strand at 471.916 kb on + strand at 471.917 kb on - strand at 471.966 kb on + strand at 471.966 kb on + strand at 471.967 kb on - strand at 471.973 kb on + strand at 471.973 kb on + strand at 471.974 kb on - strand at 471.974 kb on - strand at 471.974 kb on - strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.003 kb on - strand at 472.027 kb on + strand at 472.028 kb on - strand at 472.044 kb on + strand at 472.044 kb on + strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.048 kb on - strand at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.180 kb on - strand, within AO353_02195 at 472.276 kb on + strand, within AO353_02195 at 472.311 kb on + strand, within AO353_02195 at 472.312 kb on - strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 468,580 + -2.0 468,581 - -1.3 468,581 - +0.1 468,581 - +0.4 468,673 + AO353_02185 0.19 -1.2 468,673 + AO353_02185 0.19 -2.2 468,673 + AO353_02185 0.19 +1.0 468,673 + AO353_02185 0.19 +0.9 468,673 + AO353_02185 0.19 +1.2 468,673 + AO353_02185 0.19 -0.0 468,673 + AO353_02185 0.19 +0.6 468,673 + AO353_02185 0.19 -0.7 468,673 + AO353_02185 0.19 +0.5 468,673 + AO353_02185 0.19 -0.0 468,673 + AO353_02185 0.19 -0.2 468,673 + AO353_02185 0.19 +0.8 468,674 - AO353_02185 0.19 -0.6 468,674 - AO353_02185 0.19 +0.1 468,674 - AO353_02185 0.19 -0.3 468,679 + AO353_02185 0.20 +0.3 468,679 + AO353_02185 0.20 -0.3 468,679 + AO353_02185 0.20 -1.7 468,679 + AO353_02185 0.20 -0.4 468,679 + AO353_02185 0.20 +0.4 468,679 + AO353_02185 0.20 +1.5 468,679 + AO353_02185 0.20 +0.2 468,679 + AO353_02185 0.20 +0.3 468,680 - AO353_02185 0.20 +0.9 468,680 - AO353_02185 0.20 +0.1 468,680 - AO353_02185 0.20 -0.8 468,680 - AO353_02185 0.20 +1.1 468,680 - AO353_02185 0.20 +1.7 468,690 - AO353_02185 0.21 -1.8 468,886 + AO353_02185 0.45 -0.0 468,886 + AO353_02185 0.45 +0.1 468,886 + AO353_02185 0.45 -1.1 468,887 - AO353_02185 0.45 -0.5 468,887 - AO353_02185 0.45 -1.5 468,887 - AO353_02185 0.45 +0.3 468,887 - AO353_02185 0.45 -0.1 468,887 - AO353_02185 0.45 +0.0 468,887 - AO353_02185 0.45 +1.9 468,887 - AO353_02185 0.45 -0.9 468,887 - AO353_02185 0.45 -0.3 468,950 + AO353_02185 0.53 +0.9 469,147 + AO353_02185 0.77 +3.3 469,147 + AO353_02185 0.77 -0.4 469,147 + AO353_02185 0.77 -1.6 469,148 - AO353_02185 0.77 -0.6 469,377 - -0.6 469,547 + -2.3 469,547 + +1.4 469,558 + -0.6 469,558 + -1.0 469,558 + +0.0 469,709 - +1.7 469,714 + -0.7 469,714 + -1.5 469,714 + -2.5 469,714 + -0.3 469,714 + +1.7 469,714 + -0.1 469,714 + -0.8 469,714 + -0.6 469,715 - -0.3 469,715 - +2.7 469,715 - -0.3 469,715 - -1.1 469,715 - -0.6 469,715 - -1.9 469,715 - -1.3 469,715 - -1.1 469,715 - -2.2 469,837 - AO353_02190 0.13 +1.1 469,837 - AO353_02190 0.13 -1.6 469,837 - AO353_02190 0.13 -0.5 470,077 + AO353_02190 0.25 -1.1 470,077 + AO353_02190 0.25 -2.2 470,077 + AO353_02190 0.25 +0.1 470,077 + AO353_02190 0.25 +0.3 470,078 - AO353_02190 0.25 -2.6 470,078 - AO353_02190 0.25 -2.0 470,206 + AO353_02190 0.31 -1.1 470,345 - AO353_02190 0.38 -0.9 470,345 - AO353_02190 0.38 -0.2 470,345 - AO353_02190 0.38 -1.6 470,425 + AO353_02190 0.41 +1.7 470,425 + AO353_02190 0.41 +0.8 470,425 + AO353_02190 0.41 -2.6 470,425 + AO353_02190 0.41 -1.7 470,425 + AO353_02190 0.41 -0.1 470,426 - AO353_02190 0.41 -1.6 470,426 - AO353_02190 0.41 -2.3 470,431 + AO353_02190 0.42 -0.5 470,431 + AO353_02190 0.42 -0.2 470,431 + AO353_02190 0.42 -1.0 470,431 + AO353_02190 0.42 -0.4 470,431 + AO353_02190 0.42 +0.4 470,431 + AO353_02190 0.42 -1.8 470,431 + AO353_02190 0.42 -0.4 470,431 + AO353_02190 0.42 -2.1 470,431 + AO353_02190 0.42 +0.4 470,431 + AO353_02190 0.42 -0.9 470,431 + AO353_02190 0.42 -2.4 470,431 + AO353_02190 0.42 -1.1 470,431 + AO353_02190 0.42 +0.7 470,432 - AO353_02190 0.42 +0.4 470,432 - AO353_02190 0.42 -1.1 470,432 - AO353_02190 0.42 -1.3 470,432 - AO353_02190 0.42 +0.3 470,432 - AO353_02190 0.42 +0.5 470,432 - AO353_02190 0.42 -1.1 470,432 - AO353_02190 0.42 -1.9 470,432 - AO353_02190 0.42 -0.8 470,432 - AO353_02190 0.42 -2.6 470,432 - AO353_02190 0.42 -2.2 470,432 - AO353_02190 0.42 +0.2 470,432 - AO353_02190 0.42 -2.0 470,443 + AO353_02190 0.42 -0.6 470,443 + AO353_02190 0.42 +0.2 470,443 + AO353_02190 0.42 -0.8 470,444 - AO353_02190 0.42 -1.9 470,444 - AO353_02190 0.42 -0.5 470,444 - AO353_02190 0.42 -1.2 470,447 + AO353_02190 0.43 -2.0 470,512 + AO353_02190 0.46 -0.2 470,513 - AO353_02190 0.46 -1.3 470,558 + AO353_02190 0.48 -1.5 470,558 + AO353_02190 0.48 -0.2 470,558 + AO353_02190 0.48 -1.8 470,559 - AO353_02190 0.48 +0.2 470,559 - AO353_02190 0.48 -0.2 470,570 + AO353_02190 0.48 -2.6 470,571 - AO353_02190 0.48 -1.1 470,624 + AO353_02190 0.51 -2.4 470,624 + AO353_02190 0.51 -1.1 470,746 + AO353_02190 0.57 +0.6 470,786 + AO353_02190 0.59 -0.3 470,786 + AO353_02190 0.59 -1.7 470,787 - AO353_02190 0.59 -1.1 470,956 + AO353_02190 0.67 +0.3 470,956 + AO353_02190 0.67 -0.5 470,956 + AO353_02190 0.67 -2.0 470,956 + AO353_02190 0.67 +0.7 470,957 - AO353_02190 0.67 -1.7 470,957 - +0.7 470,957 - AO353_02190 0.67 -1.2 470,957 - AO353_02190 0.67 -1.6 471,066 + AO353_02190 0.72 +0.8 471,202 + AO353_02190 0.79 -1.3 471,203 - AO353_02190 0.79 -2.1 471,244 + AO353_02190 0.81 -1.3 471,244 + AO353_02190 0.81 -0.1 471,244 + AO353_02190 0.81 -2.4 471,244 + AO353_02190 0.81 +0.2 471,245 - AO353_02190 0.81 -0.4 471,245 - AO353_02190 0.81 -0.6 471,245 - AO353_02190 0.81 -3.1 471,245 - AO353_02190 0.81 -0.9 471,399 + AO353_02190 0.88 -1.5 471,399 + AO353_02190 0.88 +0.7 471,399 + AO353_02190 0.88 -0.0 471,399 + AO353_02190 0.88 -1.8 471,400 - AO353_02190 0.88 -2.2 471,415 + AO353_02190 0.89 +0.1 471,415 + AO353_02190 0.89 -0.6 471,416 - AO353_02190 0.89 -0.5 471,416 - AO353_02190 0.89 -2.6 471,416 - AO353_02190 0.89 -0.3 471,416 - AO353_02190 0.89 -1.5 471,416 - AO353_02190 0.89 -1.6 471,505 + +0.3 471,505 + -0.9 471,505 + -2.5 471,505 + -1.1 471,505 + -2.0 471,571 + -1.9 471,572 - -1.0 471,572 - -1.1 471,572 - -0.6 471,629 + +0.2 471,630 - +0.9 471,657 + -0.0 471,658 - -1.8 471,659 + -4.0 471,660 - -1.2 471,660 - -1.6 471,660 - -0.2 471,660 - -0.3 471,719 + -1.4 471,719 + -3.0 471,720 - +0.7 471,720 - +0.1 471,720 - +1.0 471,792 + +1.1 471,792 + -1.3 471,793 - -0.6 471,861 + +0.7 471,914 + -2.0 471,914 + +1.1 471,914 + -0.4 471,914 + -1.9 471,914 + -0.2 471,914 + +0.8 471,914 + -0.3 471,914 + -0.0 471,914 + +1.5 471,915 - -0.6 471,915 - -0.2 471,915 - +0.8 471,915 - +0.1 471,915 - -1.8 471,915 - +0.1 471,915 - -1.0 471,915 - -0.3 471,915 - +0.1 471,915 - -0.3 471,915 - +0.4 471,916 + +1.1 471,916 + -1.3 471,917 - +0.7 471,966 + -1.1 471,966 + -1.1 471,967 - +0.6 471,973 + -0.9 471,973 + -2.6 471,974 - +0.7 471,974 - +0.4 471,974 - +0.1 472,002 + +0.4 472,002 + -1.1 472,002 + +0.1 472,002 + -0.6 472,002 + +0.1 472,003 - +0.7 472,027 + -0.2 472,028 - -1.1 472,044 + -0.6 472,044 + -0.0 472,045 - +0.3 472,045 - +0.1 472,045 - -0.5 472,045 - -1.1 472,045 - -0.1 472,048 - -2.2 472,158 + AO353_02195 0.22 +0.5 472,158 + AO353_02195 0.22 -0.7 472,158 + AO353_02195 0.22 +0.1 472,158 + AO353_02195 0.22 +0.0 472,158 + AO353_02195 0.22 -0.6 472,158 + AO353_02195 0.22 +1.2 472,158 + AO353_02195 0.22 +1.0 472,180 - AO353_02195 0.25 +0.7 472,276 + AO353_02195 0.36 +1.0 472,311 + AO353_02195 0.39 +0.3 472,312 - AO353_02195 0.40 -0.6 472,647 + AO353_02195 0.78 -1.1 472,647 + AO353_02195 0.78 -0.9 472,648 - AO353_02195 0.78 -1.4 472,648 - AO353_02195 0.78 -0.4 472,648 - AO353_02195 0.78 +0.5
Or see this region's nucleotide sequence