Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02085 and AO353_02090 are separated by 108 nucleotides AO353_02090 and AO353_02095 are separated by 63 nucleotides AO353_02095 and AO353_02100 are separated by 4 nucleotides
AO353_02085: AO353_02085 - methylthioribose-1-phosphate isomerase, at 446,429 to 447,505
_02085
AO353_02090: AO353_02090 - N-ethylammeline chlorohydrolase, at 447,614 to 448,945
_02090
AO353_02095: AO353_02095 - 3-demethylubiquinone-9 3-methyltransferase, at 449,009 to 449,707
_02095
AO353_02100: AO353_02100 - phosphoglycolate phosphatase, at 449,712 to 450,383
_02100
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.974 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.365 kb on - strand, within AO353_02085 at 447.391 kb on + strand, within AO353_02085 at 447.392 kb on - strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.441 kb on + strand at 447.441 kb on + strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.542 kb on - strand at 447.543 kb on + strand at 447.544 kb on - strand at 447.544 kb on - strand at 447.573 kb on + strand at 447.573 kb on + strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.663 kb on + strand at 447.664 kb on - strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.687 kb on + strand at 447.687 kb on + strand at 447.688 kb on - strand at 447.727 kb on + strand at 447.728 kb on - strand at 447.728 kb on - strand at 447.728 kb on - strand at 448.010 kb on + strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.425 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.893 kb on + strand at 448.893 kb on + strand at 448.893 kb on + strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.943 kb on + strand at 448.944 kb on - strand at 448.944 kb on - strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.997 kb on - strand at 448.997 kb on - strand at 449.004 kb on + strand at 449.705 kb on + strand at 449.705 kb on + strand at 449.705 kb on + strand at 449.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 446,724 + AO353_02085 0.27 +1.2 446,724 + AO353_02085 0.27 -1.8 446,724 + AO353_02085 0.27 +0.3 446,725 - AO353_02085 0.27 -0.2 446,725 - AO353_02085 0.27 -1.4 446,725 - AO353_02085 0.27 -0.6 446,919 + AO353_02085 0.45 -0.1 446,919 + AO353_02085 0.45 +1.4 446,974 + AO353_02085 0.51 +0.5 447,007 + AO353_02085 0.54 -0.8 447,007 + AO353_02085 0.54 -0.5 447,007 + AO353_02085 0.54 +1.3 447,007 + AO353_02085 0.54 -1.3 447,008 - AO353_02085 0.54 +0.4 447,008 - AO353_02085 0.54 +0.1 447,365 - AO353_02085 0.87 -1.8 447,391 + AO353_02085 0.89 +0.4 447,392 - AO353_02085 0.89 -0.1 447,393 + AO353_02085 0.90 -2.0 447,393 + AO353_02085 0.90 +1.1 447,393 + AO353_02085 0.90 -0.5 447,393 + AO353_02085 0.90 +0.5 447,393 + AO353_02085 0.90 -1.5 447,394 - AO353_02085 0.90 +0.4 447,394 - AO353_02085 0.90 -1.0 447,394 - AO353_02085 0.90 -1.1 447,394 - AO353_02085 0.90 -0.6 447,441 + +1.2 447,441 + +0.4 447,442 - +1.1 447,442 - -1.0 447,442 - +3.9 447,442 - -1.3 447,541 + +0.4 447,541 + +0.9 447,541 + -0.1 447,542 - +0.5 447,543 + +0.1 447,544 - +0.7 447,544 - +0.7 447,573 + -0.8 447,573 + -2.5 447,574 - -1.5 447,574 - +0.5 447,574 - +1.1 447,574 - +1.7 447,574 - +1.1 447,574 - -0.9 447,574 - +1.9 447,574 - +1.1 447,586 + +1.0 447,586 + -0.6 447,586 + +0.4 447,586 + -0.5 447,586 + +0.8 447,586 + -0.8 447,587 - +1.7 447,587 - +1.2 447,587 - +1.3 447,587 - +1.5 447,587 - +1.0 447,587 - +0.2 447,587 - -0.9 447,587 - +2.0 447,587 - -0.1 447,587 - +1.5 447,587 - +1.4 447,587 - -0.9 447,587 - +0.4 447,590 + -0.5 447,590 + -0.8 447,590 + +0.6 447,590 + -1.9 447,590 + +0.4 447,590 + -0.1 447,591 - +1.1 447,591 - +0.1 447,591 - +2.7 447,591 - +1.8 447,591 - -1.9 447,591 - -0.1 447,591 - +1.2 447,591 - +1.3 447,591 - -2.2 447,591 - +2.4 447,642 + -0.3 447,642 + +0.1 447,642 + -0.2 447,642 + +0.7 447,642 + +0.4 447,642 + -1.0 447,643 - +0.2 447,643 - +2.3 447,643 - +0.1 447,643 - +0.9 447,643 - -0.4 447,643 - +0.7 447,663 + +0.4 447,664 - +0.8 447,666 + -0.3 447,666 + -0.3 447,666 + +0.7 447,667 - +0.1 447,667 - +0.8 447,667 - +0.3 447,667 - +0.2 447,667 - +1.6 447,687 + +0.3 447,687 + +0.2 447,688 - +0.9 447,727 + -0.1 447,728 - -0.9 447,728 - +0.9 447,728 - +0.7 448,010 + AO353_02090 0.30 +0.6 448,011 - AO353_02090 0.30 +1.2 448,011 - AO353_02090 0.30 +1.4 448,011 - AO353_02090 0.30 +1.1 448,011 - AO353_02090 0.30 +2.0 448,011 - AO353_02090 0.30 +2.1 448,011 - AO353_02090 0.30 +0.6 448,011 - AO353_02090 0.30 +1.8 448,143 + AO353_02090 0.40 +0.7 448,143 + AO353_02090 0.40 -1.3 448,143 + AO353_02090 0.40 -0.4 448,143 + AO353_02090 0.40 -1.9 448,143 + AO353_02090 0.40 +1.0 448,203 - AO353_02090 0.44 +0.6 448,203 - AO353_02090 0.44 +1.7 448,203 - AO353_02090 0.44 -0.5 448,203 - AO353_02090 0.44 +1.6 448,203 - AO353_02090 0.44 +0.4 448,425 + AO353_02090 0.61 -0.1 448,432 + AO353_02090 0.61 +0.8 448,432 + AO353_02090 0.61 +0.5 448,433 - AO353_02090 0.61 +1.4 448,433 - AO353_02090 0.61 -0.0 448,795 + AO353_02090 0.89 +1.2 448,795 + AO353_02090 0.89 +0.5 448,795 + AO353_02090 0.89 +1.0 448,795 + AO353_02090 0.89 +0.3 448,795 + AO353_02090 0.89 +2.0 448,796 - AO353_02090 0.89 -0.2 448,796 - AO353_02090 0.89 +1.2 448,796 - AO353_02090 0.89 +1.7 448,796 - AO353_02090 0.89 +1.1 448,799 + AO353_02090 0.89 +0.7 448,799 + AO353_02090 0.89 +0.9 448,799 + AO353_02090 0.89 -0.1 448,800 - AO353_02090 0.89 +0.5 448,800 - AO353_02090 0.89 -0.5 448,800 - AO353_02090 0.89 +1.7 448,893 + -0.5 448,893 + -0.5 448,893 + +1.9 448,894 - +1.1 448,894 - +0.9 448,894 - -0.4 448,894 - +0.9 448,894 - -0.3 448,894 - +1.3 448,894 - +0.8 448,894 - +1.3 448,943 + +0.8 448,944 - +1.3 448,944 - +1.6 448,996 + +0.3 448,996 + +1.9 448,996 + -0.3 448,996 + -0.0 448,996 + -0.3 448,997 - +1.6 448,997 - +0.8 449,004 + +1.4 449,705 + +3.0 449,705 + -0.6 449,705 + +1.6 449,706 - +2.4
Or see this region's nucleotide sequence