Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02010

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02000 and AO353_02005 overlap by 11 nucleotidesAO353_02005 and AO353_02010 are separated by 32 nucleotidesAO353_02010 and AO353_02015 overlap by 17 nucleotidesAO353_02015 and AO353_02020 are separated by 170 nucleotides AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641 _02000 AO353_02005: AO353_02005 - hypothetical protein, at 427,631 to 428,440 _02005 AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720 _02010 AO353_02015: AO353_02015 - acetyltransferase, at 429,704 to 430,333 _02015 AO353_02020: AO353_02020 - hypothetical protein, at 430,504 to 431,469 _02020 Position (kb) 428 429 430Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 427.503 kb on + strand, within AO353_02000at 427.504 kb on - strand, within AO353_02000at 427.584 kb on - strandat 427.584 kb on - strandat 427.587 kb on + strandat 427.988 kb on + strand, within AO353_02005at 427.989 kb on - strand, within AO353_02005at 428.132 kb on - strand, within AO353_02005at 428.387 kb on - strandat 428.647 kb on + strand, within AO353_02010at 428.647 kb on + strand, within AO353_02010at 428.648 kb on - strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.650 kb on + strand, within AO353_02010at 428.651 kb on - strand, within AO353_02010at 428.651 kb on - strand, within AO353_02010at 428.700 kb on + strand, within AO353_02010at 428.701 kb on - strand, within AO353_02010at 428.776 kb on + strand, within AO353_02010at 428.777 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.800 kb on - strand, within AO353_02010at 428.833 kb on + strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.834 kb on - strand, within AO353_02010at 428.941 kb on - strand, within AO353_02010at 429.069 kb on + strand, within AO353_02010at 429.071 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.174 kb on + strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.198 kb on - strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010at 429.411 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.510 kb on + strand, within AO353_02010at 429.537 kb on - strand, within AO353_02010at 429.590 kb on + strand, within AO353_02010at 429.631 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.715 kb on + strandat 429.767 kb on - strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.772 kb on - strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 430.005 kb on - strand, within AO353_02015at 430.042 kb on + strand, within AO353_02015at 430.068 kb on + strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.072 kb on + strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.082 kb on - strand, within AO353_02015at 430.094 kb on - strand, within AO353_02015at 430.159 kb on + strand, within AO353_02015at 430.254 kb on + strand, within AO353_02015at 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.279 kb on - strandat 430.324 kb on + strandat 430.324 kb on + strandat 430.325 kb on - strandat 430.372 kb on + strandat 430.373 kb on - strandat 430.373 kb on - strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.420 kb on + strandat 430.450 kb on + strandat 430.450 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.465 kb on - strandat 430.465 kb on - strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.516 kb on + strandat 430.632 kb on + strand, within AO353_02020at 430.632 kb on + strand, within AO353_02020at 430.702 kb on - strand, within AO353_02020

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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427,503 + AO353_02000 0.89 +4.5
427,504 - AO353_02000 0.89 +0.6
427,584 - +2.9
427,584 - +4.6
427,587 + -0.9
427,988 + AO353_02005 0.44 -1.1
427,989 - AO353_02005 0.44 +3.1
428,132 - AO353_02005 0.62 +4.5
428,387 - +4.9
428,647 + AO353_02010 0.14 +2.2
428,647 + AO353_02010 0.14 +4.1
428,648 - AO353_02010 0.14 +3.6
428,650 + AO353_02010 0.14 +3.9
428,650 + AO353_02010 0.14 -0.2
428,650 + AO353_02010 0.14 +2.7
428,651 - AO353_02010 0.14 +2.5
428,651 - AO353_02010 0.14 +3.4
428,700 + AO353_02010 0.18 +2.8
428,701 - AO353_02010 0.18 +2.6
428,776 + AO353_02010 0.24 +2.6
428,777 - AO353_02010 0.24 +2.6
428,800 - AO353_02010 0.26 +3.6
428,800 - AO353_02010 0.26 +0.4
428,833 + AO353_02010 0.29 +2.4
428,834 - AO353_02010 0.29 +3.7
428,834 - AO353_02010 0.29 +1.5
428,941 - AO353_02010 0.38 +1.4
429,069 + AO353_02010 0.48 +3.0
429,071 + AO353_02010 0.48 +3.4
429,174 + AO353_02010 0.56 +3.0
429,174 + AO353_02010 0.56 +3.6
429,198 - AO353_02010 0.58 +2.7
429,198 - AO353_02010 0.58 -1.3
429,411 + AO353_02010 0.75 +2.4
429,411 + AO353_02010 0.75 +5.2
429,508 + AO353_02010 0.83 +2.2
429,508 + AO353_02010 0.83 +2.5
429,508 + AO353_02010 0.83 +3.3
429,508 + AO353_02010 0.83 +1.0
429,510 + AO353_02010 0.83 +3.5
429,537 - AO353_02010 0.85 +0.6
429,590 + AO353_02010 0.90 +2.5
429,631 - +2.6
429,642 - +2.3
429,642 - +3.3
429,642 - +3.5
429,642 - +4.0
429,642 - +2.3
429,715 + +5.0
429,767 - AO353_02015 0.10 +3.6
429,771 + AO353_02015 0.11 +0.7
429,771 + AO353_02015 0.11 +3.1
429,772 - AO353_02015 0.11 +1.2
429,887 + AO353_02015 0.29 +2.7
429,887 + AO353_02015 0.29 +1.7
429,888 - AO353_02015 0.29 +1.8
429,888 - AO353_02015 0.29 +3.5
429,893 + AO353_02015 0.30 +3.1
429,893 + AO353_02015 0.30 +3.2
429,894 - AO353_02015 0.30 +2.3
429,894 - AO353_02015 0.30 +2.7
429,982 + AO353_02015 0.44 +2.7
429,982 + AO353_02015 0.44 +2.9
430,005 - AO353_02015 0.48 +2.5
430,042 + AO353_02015 0.54 +1.3
430,068 + AO353_02015 0.58 +4.4
430,069 - AO353_02015 0.58 +4.0
430,069 - AO353_02015 0.58 +2.4
430,070 + AO353_02015 0.58 +2.9
430,070 + AO353_02015 0.58 +1.9
430,070 + AO353_02015 0.58 +3.3
430,070 + AO353_02015 0.58 +2.4
430,070 + AO353_02015 0.58 +3.5
430,071 - AO353_02015 0.58 +0.8
430,071 - AO353_02015 0.58 +3.6
430,071 - AO353_02015 0.58 +3.4
430,071 - AO353_02015 0.58 +1.7
430,071 - AO353_02015 0.58 +3.8
430,071 - AO353_02015 0.58 +2.4
430,072 + AO353_02015 0.58 +3.9
430,073 - AO353_02015 0.59 +2.8
430,073 - AO353_02015 0.59 +3.3
430,082 - AO353_02015 0.60 +3.5
430,094 - AO353_02015 0.62 +3.3
430,159 + AO353_02015 0.72 +4.8
430,254 + AO353_02015 0.87 +3.1
430,275 + +3.5
430,275 + +3.7
430,275 + -0.9
430,275 + +3.3
430,276 - +1.3
430,276 - +3.0
430,276 - +2.8
430,276 - +3.1
430,278 + +3.3
430,278 + +3.4
430,278 + +3.1
430,279 - +3.0
430,324 + +2.6
430,324 + +2.3
430,325 - +2.3
430,372 + +3.6
430,373 - -0.5
430,373 - +1.7
430,396 + +2.0
430,396 + +2.9
430,396 + +2.3
430,420 + +1.7
430,450 + +4.1
430,450 + +1.2
430,464 + +3.5
430,464 + +3.2
430,464 + +3.8
430,464 + +3.9
430,464 + +3.3
430,465 - -2.1
430,465 - -1.8
430,505 + +4.0
430,505 + -0.3
430,505 + +2.2
430,516 + +3.0
430,632 + AO353_02020 0.13 -0.1
430,632 + AO353_02020 0.13 +2.2
430,702 - AO353_02020 0.20 +1.4

Or see this region's nucleotide sequence