Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02000 and AO353_02005 overlap by 11 nucleotides AO353_02005 and AO353_02010 are separated by 32 nucleotides
AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641
_02000
AO353_02005: AO353_02005 - hypothetical protein, at 427,631 to 428,440
_02005
AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720
_02010
Position (kb) 427
428
429 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 426.749 kb on - strand, within AO353_02000 at 426.749 kb on - strand, within AO353_02000 at 426.751 kb on - strand, within AO353_02000 at 426.868 kb on - strand, within AO353_02000 at 426.911 kb on - strand, within AO353_02000 at 426.957 kb on - strand, within AO353_02000 at 426.961 kb on - strand, within AO353_02000 at 426.988 kb on - strand, within AO353_02000 at 427.159 kb on - strand, within AO353_02000 at 427.503 kb on + strand, within AO353_02000 at 427.504 kb on - strand, within AO353_02000 at 427.584 kb on - strand at 427.584 kb on - strand at 427.587 kb on + strand at 427.988 kb on + strand, within AO353_02005 at 427.989 kb on - strand, within AO353_02005 at 428.132 kb on - strand, within AO353_02005 at 428.387 kb on - strand at 428.647 kb on + strand, within AO353_02010 at 428.647 kb on + strand, within AO353_02010 at 428.648 kb on - strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.650 kb on + strand, within AO353_02010 at 428.651 kb on - strand, within AO353_02010 at 428.651 kb on - strand, within AO353_02010 at 428.700 kb on + strand, within AO353_02010 at 428.701 kb on - strand, within AO353_02010 at 428.776 kb on + strand, within AO353_02010 at 428.777 kb on - strand, within AO353_02010 at 428.800 kb on - strand, within AO353_02010 at 428.800 kb on - strand, within AO353_02010 at 428.833 kb on + strand, within AO353_02010 at 428.834 kb on - strand, within AO353_02010 at 428.834 kb on - strand, within AO353_02010 at 428.941 kb on - strand, within AO353_02010 at 429.069 kb on + strand, within AO353_02010 at 429.071 kb on + strand, within AO353_02010 at 429.174 kb on + strand, within AO353_02010 at 429.174 kb on + strand, within AO353_02010 at 429.198 kb on - strand, within AO353_02010 at 429.198 kb on - strand, within AO353_02010 at 429.411 kb on + strand, within AO353_02010 at 429.411 kb on + strand, within AO353_02010
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 426,749 - AO353_02000 0.31 +3.0 426,749 - AO353_02000 0.31 +4.8 426,751 - AO353_02000 0.31 +3.1 426,868 - AO353_02000 0.40 +3.1 426,911 - AO353_02000 0.43 +3.4 426,957 - AO353_02000 0.47 +3.9 426,961 - AO353_02000 0.47 +3.4 426,988 - AO353_02000 0.49 +2.7 427,159 - AO353_02000 0.63 +3.9 427,503 + AO353_02000 0.89 +4.5 427,504 - AO353_02000 0.89 +0.6 427,584 - +2.9 427,584 - +4.6 427,587 + -0.9 427,988 + AO353_02005 0.44 -1.1 427,989 - AO353_02005 0.44 +3.1 428,132 - AO353_02005 0.62 +4.5 428,387 - +4.9 428,647 + AO353_02010 0.14 +2.2 428,647 + AO353_02010 0.14 +4.1 428,648 - AO353_02010 0.14 +3.6 428,650 + AO353_02010 0.14 +3.9 428,650 + AO353_02010 0.14 -0.2 428,650 + AO353_02010 0.14 +2.7 428,651 - AO353_02010 0.14 +2.5 428,651 - AO353_02010 0.14 +3.4 428,700 + AO353_02010 0.18 +2.8 428,701 - AO353_02010 0.18 +2.6 428,776 + AO353_02010 0.24 +2.6 428,777 - AO353_02010 0.24 +2.6 428,800 - AO353_02010 0.26 +3.6 428,800 - AO353_02010 0.26 +0.4 428,833 + AO353_02010 0.29 +2.4 428,834 - AO353_02010 0.29 +3.7 428,834 - AO353_02010 0.29 +1.5 428,941 - AO353_02010 0.38 +1.4 429,069 + AO353_02010 0.48 +3.0 429,071 + AO353_02010 0.48 +3.4 429,174 + AO353_02010 0.56 +3.0 429,174 + AO353_02010 0.56 +3.6 429,198 - AO353_02010 0.58 +2.7 429,198 - AO353_02010 0.58 -1.3 429,411 + AO353_02010 0.75 +2.4 429,411 + AO353_02010 0.75 +5.2
Or see this region's nucleotide sequence