Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01945

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01940 and AO353_01945 are separated by 187 nucleotidesAO353_01945 and AO353_01950 are separated by 21 nucleotidesAO353_01950 and AO353_01955 are separated by 89 nucleotides AO353_01940: AO353_01940 - pyruvate kinase, at 410,246 to 411,661 _01940 AO353_01945: AO353_01945 - urea transporter, at 411,849 to 412,769 _01945 AO353_01950: AO353_01950 - ion transporter, at 412,791 to 413,615 _01950 AO353_01955: AO353_01955 - thiosulfate transporter subunit, at 413,705 to 414,703 _01955 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.355 kb on - strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.371 kb on + strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.372 kb on - strand, within AO353_01940at 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.583 kb on + strandat 411.584 kb on - strandat 411.584 kb on - strandat 411.643 kb on + strandat 411.644 kb on - strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.645 kb on + strandat 411.718 kb on + strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.719 kb on - strandat 411.722 kb on + strandat 411.722 kb on + strandat 411.722 kb on + strandat 411.723 kb on - strandat 411.723 kb on - strandat 411.723 kb on - strandat 411.738 kb on + strandat 411.738 kb on + strandat 411.739 kb on - strandat 411.740 kb on + strandat 411.740 kb on + strandat 411.752 kb on + strandat 411.753 kb on - strandat 411.839 kb on - strandat 411.975 kb on - strand, within AO353_01945at 411.975 kb on - strand, within AO353_01945at 411.975 kb on - strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.083 kb on + strand, within AO353_01945at 412.084 kb on - strand, within AO353_01945at 412.084 kb on - strand, within AO353_01945at 412.233 kb on + strand, within AO353_01945at 412.233 kb on + strand, within AO353_01945at 412.234 kb on - strand, within AO353_01945at 412.297 kb on + strand, within AO353_01945at 412.298 kb on - strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.521 kb on + strand, within AO353_01945at 412.522 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.528 kb on - strand, within AO353_01945at 412.596 kb on - strand, within AO353_01945at 412.718 kb on + strandat 412.718 kb on + strandat 412.718 kb on + strandat 412.718 kb on + strandat 412.719 kb on - strandat 412.719 kb on - strandat 412.719 kb on - strandat 412.719 kb on - strandat 412.719 kb on - strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.757 kb on + strandat 412.758 kb on - strandat 412.772 kb on + strandat 412.772 kb on + strandat 412.772 kb on + strandat 412.773 kb on - strandat 412.773 kb on - strandat 412.773 kb on - strandat 412.824 kb on + strandat 412.824 kb on + strandat 412.824 kb on + strandat 412.825 kb on - strandat 412.966 kb on - strand, within AO353_01950at 412.966 kb on - strand, within AO353_01950at 413.004 kb on + strand, within AO353_01950at 413.004 kb on + strand, within AO353_01950at 413.004 kb on + strand, within AO353_01950at 413.005 kb on - strand, within AO353_01950at 413.005 kb on - strand, within AO353_01950at 413.019 kb on + strand, within AO353_01950at 413.019 kb on + strand, within AO353_01950at 413.019 kb on + strand, within AO353_01950at 413.019 kb on + strand, within AO353_01950at 413.019 kb on + strand, within AO353_01950at 413.020 kb on - strand, within AO353_01950at 413.020 kb on - strand, within AO353_01950at 413.020 kb on - strand, within AO353_01950at 413.020 kb on - strand, within AO353_01950at 413.044 kb on - strand, within AO353_01950at 413.106 kb on + strand, within AO353_01950at 413.106 kb on + strand, within AO353_01950at 413.107 kb on - strand, within AO353_01950at 413.107 kb on - strand, within AO353_01950at 413.107 kb on - strand, within AO353_01950at 413.107 kb on - strand, within AO353_01950at 413.109 kb on + strand, within AO353_01950at 413.109 kb on + strand, within AO353_01950at 413.109 kb on + strand, within AO353_01950at 413.109 kb on + strand, within AO353_01950at 413.110 kb on - strand, within AO353_01950at 413.110 kb on - strand, within AO353_01950at 413.110 kb on - strand, within AO353_01950at 413.110 kb on - strand, within AO353_01950at 413.110 kb on - strand, within AO353_01950at 413.124 kb on + strand, within AO353_01950at 413.150 kb on + strand, within AO353_01950at 413.187 kb on + strand, within AO353_01950at 413.188 kb on - strand, within AO353_01950at 413.188 kb on - strand, within AO353_01950at 413.206 kb on - strand, within AO353_01950at 413.248 kb on + strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.249 kb on - strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.298 kb on + strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.299 kb on - strand, within AO353_01950at 413.327 kb on + strand, within AO353_01950at 413.327 kb on + strand, within AO353_01950at 413.328 kb on - strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.349 kb on + strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.350 kb on - strand, within AO353_01950at 413.609 kb on - strandat 413.614 kb on - strandat 413.644 kb on + strandat 413.644 kb on + strandat 413.644 kb on + strandat 413.645 kb on - strandat 413.648 kb on + strandat 413.658 kb on + strandat 413.658 kb on + strandat 413.660 kb on + strandat 413.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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411,355 - AO353_01940 0.78 -0.8
411,371 + AO353_01940 0.79 +1.1
411,371 + AO353_01940 0.79 +0.6
411,371 + AO353_01940 0.79 -1.8
411,371 + AO353_01940 0.79 -1.0
411,372 - AO353_01940 0.80 -0.8
411,372 - AO353_01940 0.80 -0.0
411,372 - AO353_01940 0.80 -0.0
411,372 - AO353_01940 0.80 -2.2
411,583 + +0.7
411,583 + -0.2
411,583 + -0.5
411,583 + -0.1
411,583 + +0.9
411,583 + -0.9
411,583 + +0.4
411,584 - -0.3
411,584 - -1.7
411,643 + -1.3
411,644 - +0.1
411,645 + -0.8
411,645 + +2.0
411,645 + +0.8
411,645 + +0.6
411,645 + +0.7
411,645 + +0.8
411,645 + +0.5
411,718 + -0.6
411,719 - -0.6
411,719 - +0.8
411,719 - +0.5
411,719 - -1.3
411,722 + +0.9
411,722 + -1.5
411,722 + +0.5
411,723 - -0.4
411,723 - +0.6
411,723 - -0.8
411,738 + +0.4
411,738 + +1.2
411,739 - -0.1
411,740 + -0.3
411,740 + -0.7
411,752 + -0.0
411,753 - -1.1
411,839 - +0.1
411,975 - AO353_01945 0.14 -1.0
411,975 - AO353_01945 0.14 +0.1
411,975 - AO353_01945 0.14 +0.1
412,083 + AO353_01945 0.25 +0.6
412,083 + AO353_01945 0.25 -2.0
412,083 + AO353_01945 0.25 +1.6
412,084 - AO353_01945 0.26 -2.1
412,084 - AO353_01945 0.26 -0.1
412,233 + AO353_01945 0.42 -1.2
412,233 + AO353_01945 0.42 -0.8
412,234 - AO353_01945 0.42 +0.9
412,297 + AO353_01945 0.49 -0.6
412,298 - AO353_01945 0.49 -0.3
412,521 + AO353_01945 0.73 +0.5
412,521 + AO353_01945 0.73 -0.6
412,521 + AO353_01945 0.73 +0.1
412,521 + AO353_01945 0.73 +0.7
412,522 - AO353_01945 0.73 -1.1
412,528 - AO353_01945 0.74 -2.7
412,528 - AO353_01945 0.74 -0.3
412,528 - AO353_01945 0.74 +0.3
412,528 - AO353_01945 0.74 +0.2
412,596 - AO353_01945 0.81 +1.7
412,718 + +0.5
412,718 + +1.0
412,718 + -2.8
412,718 + +1.0
412,719 - +0.5
412,719 - -0.6
412,719 - -0.6
412,719 - -1.6
412,719 - +2.0
412,757 + -0.3
412,757 + -0.8
412,757 + -0.3
412,757 + -2.1
412,757 + -1.8
412,757 + -1.0
412,757 + -1.0
412,757 + -1.3
412,758 - +0.9
412,772 + +0.5
412,772 + +0.2
412,772 + +0.0
412,773 - +1.0
412,773 - -0.6
412,773 - +0.5
412,824 + +0.9
412,824 + -1.6
412,824 + -0.6
412,825 - +0.1
412,966 - AO353_01950 0.21 +0.1
412,966 - AO353_01950 0.21 +0.6
413,004 + AO353_01950 0.26 -2.3
413,004 + AO353_01950 0.26 -1.6
413,004 + AO353_01950 0.26 +0.1
413,005 - AO353_01950 0.26 +1.2
413,005 - AO353_01950 0.26 -0.7
413,019 + AO353_01950 0.28 -1.1
413,019 + AO353_01950 0.28 -0.3
413,019 + AO353_01950 0.28 +2.1
413,019 + AO353_01950 0.28 +0.1
413,019 + AO353_01950 0.28 +1.0
413,020 - AO353_01950 0.28 -0.8
413,020 - AO353_01950 0.28 +0.5
413,020 - AO353_01950 0.28 +0.8
413,020 - AO353_01950 0.28 -0.4
413,044 - AO353_01950 0.31 +0.3
413,106 + AO353_01950 0.38 -0.2
413,106 + AO353_01950 0.38 -0.6
413,107 - AO353_01950 0.38 +1.3
413,107 - AO353_01950 0.38 -0.5
413,107 - AO353_01950 0.38 -1.1
413,107 - AO353_01950 0.38 -0.8
413,109 + AO353_01950 0.39 -1.0
413,109 + AO353_01950 0.39 +0.6
413,109 + AO353_01950 0.39 -1.1
413,109 + AO353_01950 0.39 -0.7
413,110 - AO353_01950 0.39 +0.1
413,110 - AO353_01950 0.39 -0.0
413,110 - AO353_01950 0.39 +0.2
413,110 - AO353_01950 0.39 -0.9
413,110 - AO353_01950 0.39 -0.2
413,124 + AO353_01950 0.40 -0.1
413,150 + AO353_01950 0.44 -0.9
413,187 + AO353_01950 0.48 +0.6
413,188 - AO353_01950 0.48 -0.6
413,188 - AO353_01950 0.48 +0.1
413,206 - AO353_01950 0.50 -0.2
413,248 + AO353_01950 0.55 +0.3
413,249 - AO353_01950 0.56 +1.1
413,249 - AO353_01950 0.56 +0.6
413,249 - AO353_01950 0.56 -1.3
413,249 - AO353_01950 0.56 +0.6
413,249 - AO353_01950 0.56 +1.7
413,249 - AO353_01950 0.56 -0.2
413,298 + AO353_01950 0.61 +0.1
413,298 + AO353_01950 0.61 -2.2
413,298 + AO353_01950 0.61 +1.4
413,298 + AO353_01950 0.61 -0.6
413,298 + AO353_01950 0.61 +1.0
413,298 + AO353_01950 0.61 -1.3
413,298 + AO353_01950 0.61 +1.0
413,298 + AO353_01950 0.61 -1.3
413,298 + AO353_01950 0.61 -0.1
413,298 + AO353_01950 0.61 +0.5
413,298 + AO353_01950 0.61 -0.6
413,298 + AO353_01950 0.61 -0.8
413,298 + AO353_01950 0.61 +2.1
413,298 + AO353_01950 0.61 -0.7
413,299 - AO353_01950 0.62 +0.1
413,299 - AO353_01950 0.62 +0.8
413,299 - AO353_01950 0.62 -0.4
413,299 - AO353_01950 0.62 -0.0
413,299 - AO353_01950 0.62 +0.4
413,299 - AO353_01950 0.62 -0.1
413,299 - AO353_01950 0.62 -0.2
413,299 - AO353_01950 0.62 +1.1
413,299 - AO353_01950 0.62 -0.0
413,299 - AO353_01950 0.62 +0.1
413,299 - AO353_01950 0.62 +2.3
413,299 - AO353_01950 0.62 -0.9
413,299 - AO353_01950 0.62 -0.6
413,299 - AO353_01950 0.62 +0.7
413,299 - AO353_01950 0.62 +0.8
413,299 - AO353_01950 0.62 -0.1
413,299 - AO353_01950 0.62 -0.0
413,299 - AO353_01950 0.62 -1.2
413,299 - AO353_01950 0.62 -0.6
413,299 - AO353_01950 0.62 -0.6
413,299 - AO353_01950 0.62 -1.6
413,327 + AO353_01950 0.65 +1.8
413,327 + AO353_01950 0.65 +1.0
413,328 - AO353_01950 0.65 +1.7
413,349 + AO353_01950 0.68 -0.3
413,349 + AO353_01950 0.68 +0.1
413,349 + AO353_01950 0.68 -0.3
413,349 + AO353_01950 0.68 +0.4
413,349 + AO353_01950 0.68 -0.9
413,349 + AO353_01950 0.68 +0.7
413,349 + AO353_01950 0.68 -1.9
413,350 - AO353_01950 0.68 +0.3
413,350 - AO353_01950 0.68 +0.7
413,350 - AO353_01950 0.68 -0.4
413,350 - AO353_01950 0.68 -0.7
413,350 - AO353_01950 0.68 +0.0
413,350 - AO353_01950 0.68 -1.4
413,350 - AO353_01950 0.68 +0.1
413,350 - AO353_01950 0.68 +1.0
413,350 - AO353_01950 0.68 -0.1
413,350 - AO353_01950 0.68 -1.5
413,609 - -0.3
413,614 - -0.7
413,644 + -0.1
413,644 + -0.5
413,644 + +1.0
413,645 - -0.9
413,648 + -0.9
413,658 + +0.2
413,658 + -1.6
413,660 + +0.1
413,660 + +0.1

Or see this region's nucleotide sequence