Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01935

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01930 and AO353_01935 are separated by 171 nucleotidesAO353_01935 and AO353_01940 overlap by 11 nucleotides AO353_01930: AO353_01930 - 2-hydroxy-3-oxopropionate reductase, at 407,914 to 408,804 _01930 AO353_01935: AO353_01935 - hydroxypyruvate reductase, at 408,976 to 410,256 _01935 AO353_01940: AO353_01940 - pyruvate kinase, at 410,246 to 411,661 _01940 Position (kb) 408 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.259 kb on + strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.260 kb on - strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.566 kb on + strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.567 kb on - strand, within AO353_01930at 408.798 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.802 kb on + strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.803 kb on - strandat 408.812 kb on + strandat 408.822 kb on + strandat 408.822 kb on + strandat 408.823 kb on - strandat 408.823 kb on - strandat 408.837 kb on + strandat 408.838 kb on - strandat 408.920 kb on + strandat 408.920 kb on + strandat 408.929 kb on + strandat 408.929 kb on + strandat 408.930 kb on - strandat 408.930 kb on - strandat 409.064 kb on + strandat 409.064 kb on + strandat 409.485 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.510 kb on + strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.511 kb on - strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.512 kb on + strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.513 kb on - strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.516 kb on + strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.517 kb on - strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.682 kb on + strand, within AO353_01935at 409.683 kb on - strand, within AO353_01935at 409.683 kb on - strand, within AO353_01935at 409.865 kb on + strand, within AO353_01935at 409.865 kb on + strand, within AO353_01935at 409.866 kb on - strand, within AO353_01935at 409.866 kb on - strand, within AO353_01935at 410.086 kb on + strand, within AO353_01935at 410.087 kb on - strand, within AO353_01935at 410.087 kb on - strand, within AO353_01935at 410.152 kb on + strandat 410.152 kb on + strandat 410.152 kb on + strandat 410.152 kb on + strandat 410.153 kb on - strandat 410.153 kb on - strandat 410.257 kb on + strandat 410.257 kb on + strandat 410.258 kb on - strandat 410.258 kb on - strandat 410.258 kb on - strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.341 kb on + strandat 410.342 kb on - strandat 410.342 kb on - strandat 410.342 kb on - strandat 410.393 kb on + strand, within AO353_01940at 410.393 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.660 kb on + strand, within AO353_01940at 410.661 kb on - strand, within AO353_01940at 410.799 kb on + strand, within AO353_01940at 410.799 kb on + strand, within AO353_01940at 410.800 kb on - strand, within AO353_01940at 410.800 kb on - strand, within AO353_01940

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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408,259 + AO353_01930 0.39 +2.3
408,259 + AO353_01930 0.39 +0.5
408,259 + AO353_01930 0.39 -0.1
408,259 + AO353_01930 0.39 -0.5
408,260 - AO353_01930 0.39 +0.8
408,260 - AO353_01930 0.39 +0.9
408,260 - AO353_01930 0.39 -1.0
408,566 + AO353_01930 0.73 -0.0
408,566 + AO353_01930 0.73 +0.3
408,566 + AO353_01930 0.73 -0.0
408,566 + AO353_01930 0.73 +0.7
408,566 + AO353_01930 0.73 -0.5
408,567 - AO353_01930 0.73 +0.2
408,567 - AO353_01930 0.73 -0.4
408,567 - AO353_01930 0.73 +0.8
408,798 + -2.8
408,802 + -1.4
408,802 + -0.6
408,802 + -0.1
408,802 + +0.7
408,802 + +0.7
408,803 - +0.4
408,803 - -0.8
408,803 - -0.4
408,803 - -2.8
408,803 - -0.2
408,803 - -2.0
408,803 - -0.5
408,803 - -0.4
408,803 - +0.2
408,803 - +1.1
408,803 - +0.4
408,803 - +1.7
408,803 - -1.6
408,812 + -0.8
408,822 + +0.2
408,822 + +0.3
408,823 - +0.1
408,823 - +2.3
408,837 + -1.6
408,838 - +0.1
408,920 + -1.8
408,920 + -1.1
408,929 + +1.3
408,929 + +1.6
408,930 - -0.0
408,930 - +0.5
409,064 + +0.9
409,064 + +0.6
409,485 + AO353_01935 0.40 +1.0
409,510 + AO353_01935 0.42 +0.7
409,510 + AO353_01935 0.42 +0.5
409,510 + AO353_01935 0.42 +0.8
409,511 - AO353_01935 0.42 -0.6
409,511 - AO353_01935 0.42 +0.4
409,511 - AO353_01935 0.42 -1.9
409,511 - AO353_01935 0.42 +0.4
409,511 - AO353_01935 0.42 -2.1
409,511 - AO353_01935 0.42 -1.4
409,512 + AO353_01935 0.42 -0.6
409,512 + AO353_01935 0.42 +0.3
409,512 + AO353_01935 0.42 +1.4
409,512 + AO353_01935 0.42 -1.1
409,512 + AO353_01935 0.42 +1.2
409,512 + AO353_01935 0.42 -2.8
409,512 + AO353_01935 0.42 +1.0
409,512 + AO353_01935 0.42 -1.5
409,512 + AO353_01935 0.42 -0.6
409,512 + AO353_01935 0.42 +0.2
409,512 + AO353_01935 0.42 -0.4
409,513 - AO353_01935 0.42 -0.3
409,513 - AO353_01935 0.42 -0.0
409,513 - AO353_01935 0.42 -0.9
409,513 - AO353_01935 0.42 -0.5
409,513 - AO353_01935 0.42 -0.5
409,513 - AO353_01935 0.42 +1.9
409,513 - AO353_01935 0.42 -1.1
409,513 - AO353_01935 0.42 -0.3
409,513 - AO353_01935 0.42 +1.6
409,513 - AO353_01935 0.42 -1.1
409,516 + AO353_01935 0.42 +0.5
409,516 + AO353_01935 0.42 -1.0
409,516 + AO353_01935 0.42 -0.4
409,517 - AO353_01935 0.42 +0.9
409,517 - AO353_01935 0.42 -1.3
409,517 - AO353_01935 0.42 -0.8
409,682 + AO353_01935 0.55 -0.3
409,682 + AO353_01935 0.55 -0.3
409,682 + AO353_01935 0.55 +0.6
409,682 + AO353_01935 0.55 -0.0
409,683 - AO353_01935 0.55 +2.3
409,683 - AO353_01935 0.55 +0.4
409,865 + AO353_01935 0.69 -1.0
409,865 + AO353_01935 0.69 +1.0
409,866 - AO353_01935 0.69 +0.6
409,866 - AO353_01935 0.69 +2.4
410,086 + AO353_01935 0.87 +0.3
410,087 - AO353_01935 0.87 +0.8
410,087 - AO353_01935 0.87 +0.1
410,152 + -0.1
410,152 + -0.0
410,152 + -0.9
410,152 + +0.1
410,153 - -0.0
410,153 - -0.6
410,257 + -1.0
410,257 + -0.4
410,258 - +0.5
410,258 - -0.1
410,258 - -0.0
410,341 + -0.9
410,341 + -1.2
410,341 + +0.3
410,341 + -0.8
410,342 - +1.0
410,342 - +0.3
410,342 - -0.0
410,393 + AO353_01940 0.10 +0.2
410,393 + AO353_01940 0.10 -1.3
410,660 + AO353_01940 0.29 -1.1
410,660 + AO353_01940 0.29 -1.0
410,660 + AO353_01940 0.29 -0.6
410,660 + AO353_01940 0.29 +0.3
410,660 + AO353_01940 0.29 -0.6
410,660 + AO353_01940 0.29 +0.1
410,661 - AO353_01940 0.29 +1.7
410,799 + AO353_01940 0.39 -2.2
410,799 + AO353_01940 0.39 +1.5
410,800 - AO353_01940 0.39 -1.8
410,800 - AO353_01940 0.39 -0.3

Or see this region's nucleotide sequence