Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01925 and AO353_01930 are separated by 108 nucleotides AO353_01930 and AO353_01935 are separated by 171 nucleotides
AO353_01925: AO353_01925 - hydroxypyruvate isomerase, at 407,023 to 407,805
_01925
AO353_01930: AO353_01930 - 2-hydroxy-3-oxopropionate reductase, at 407,914 to 408,804
_01930
AO353_01935: AO353_01935 - hydroxypyruvate reductase, at 408,976 to 410,256
_01935
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.002 kb on + strand at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.552 kb on - strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.683 kb on + strand, within AO353_01925 at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.863 kb on + strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.870 kb on - strand at 407.891 kb on + strand at 407.891 kb on + strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.893 kb on + strand at 407.893 kb on + strand at 407.893 kb on + strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.919 kb on + strand at 407.920 kb on - strand at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.798 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.812 kb on + strand at 408.822 kb on + strand at 408.822 kb on + strand at 408.823 kb on - strand at 408.823 kb on - strand at 408.837 kb on + strand at 408.838 kb on - strand at 408.920 kb on + strand at 408.920 kb on + strand at 408.929 kb on + strand at 408.929 kb on + strand at 408.930 kb on - strand at 408.930 kb on - strand at 409.064 kb on + strand at 409.064 kb on + strand at 409.485 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.683 kb on - strand, within AO353_01935 at 409.683 kb on - strand, within AO353_01935
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 407,002 + -2.1 407,122 + AO353_01925 0.13 +0.4 407,122 + AO353_01925 0.13 +0.9 407,122 + AO353_01925 0.13 -0.8 407,122 + AO353_01925 0.13 -0.1 407,122 + AO353_01925 0.13 +0.8 407,123 - AO353_01925 0.13 +0.6 407,123 - AO353_01925 0.13 +0.5 407,123 - AO353_01925 0.13 -1.5 407,299 + AO353_01925 0.35 +1.0 407,299 + AO353_01925 0.35 +1.0 407,300 - AO353_01925 0.35 +0.7 407,300 - AO353_01925 0.35 -0.3 407,300 - AO353_01925 0.35 +0.4 407,300 - AO353_01925 0.35 +0.7 407,404 + AO353_01925 0.49 -0.6 407,404 + AO353_01925 0.49 +0.1 407,404 + AO353_01925 0.49 -0.9 407,404 + AO353_01925 0.49 +0.1 407,404 + AO353_01925 0.49 -2.6 407,404 + AO353_01925 0.49 +0.4 407,404 + AO353_01925 0.49 +0.1 407,405 - AO353_01925 0.49 -1.1 407,405 - AO353_01925 0.49 -0.6 407,482 + AO353_01925 0.59 -0.6 407,482 + AO353_01925 0.59 -0.3 407,482 + AO353_01925 0.59 -0.2 407,482 + AO353_01925 0.59 -0.8 407,482 + AO353_01925 0.59 -0.6 407,482 + AO353_01925 0.59 -1.5 407,483 - AO353_01925 0.59 -1.1 407,483 - AO353_01925 0.59 +0.7 407,483 - AO353_01925 0.59 -1.4 407,483 - AO353_01925 0.59 -0.1 407,551 + AO353_01925 0.67 +0.5 407,551 + AO353_01925 0.67 -0.3 407,552 - AO353_01925 0.68 -0.5 407,560 + AO353_01925 0.69 +0.7 407,560 + AO353_01925 0.69 -1.0 407,560 + AO353_01925 0.69 -0.2 407,560 + AO353_01925 0.69 +0.8 407,560 + AO353_01925 0.69 -0.7 407,560 + AO353_01925 0.69 +1.0 407,560 + AO353_01925 0.69 -0.0 407,560 + AO353_01925 0.69 +0.1 407,560 + AO353_01925 0.69 -1.1 407,560 + AO353_01925 0.69 +1.9 407,560 + AO353_01925 0.69 +1.5 407,561 - AO353_01925 0.69 -1.1 407,561 - AO353_01925 0.69 -0.3 407,561 - AO353_01925 0.69 -0.2 407,561 - AO353_01925 0.69 -1.1 407,561 - AO353_01925 0.69 +0.8 407,561 - AO353_01925 0.69 +0.1 407,561 - AO353_01925 0.69 +0.8 407,561 - AO353_01925 0.69 +1.1 407,561 - AO353_01925 0.69 +0.4 407,561 - AO353_01925 0.69 +0.3 407,561 - AO353_01925 0.69 -0.9 407,683 + AO353_01925 0.84 -0.2 407,743 + -1.9 407,743 + +0.1 407,743 + -1.3 407,743 + +0.8 407,744 - -1.3 407,744 - -1.6 407,744 - +0.7 407,744 - +0.9 407,744 - +0.4 407,744 - +0.6 407,744 - +0.2 407,744 - +0.2 407,744 - +0.7 407,863 + +1.1 407,864 - +0.7 407,864 - +0.1 407,864 - +1.0 407,869 + +1.9 407,869 + -0.4 407,869 + +0.7 407,869 + +1.1 407,869 + +0.1 407,869 + +0.6 407,869 + -0.6 407,870 - -0.7 407,891 + -0.3 407,891 + -0.8 407,892 - -0.4 407,892 - -0.9 407,892 - -1.6 407,892 - +0.7 407,893 + -0.9 407,893 + +0.8 407,893 + -1.6 407,894 - -0.9 407,894 - +1.2 407,894 - +1.5 407,894 - -0.7 407,894 - -0.4 407,894 - +0.4 407,919 + -1.5 407,920 - +1.2 408,259 + AO353_01930 0.39 +2.3 408,259 + AO353_01930 0.39 +0.5 408,259 + AO353_01930 0.39 -0.1 408,259 + AO353_01930 0.39 -0.5 408,260 - AO353_01930 0.39 +0.8 408,260 - AO353_01930 0.39 +0.9 408,260 - AO353_01930 0.39 -1.0 408,566 + AO353_01930 0.73 -0.0 408,566 + AO353_01930 0.73 +0.3 408,566 + AO353_01930 0.73 -0.0 408,566 + AO353_01930 0.73 +0.7 408,566 + AO353_01930 0.73 -0.5 408,567 - AO353_01930 0.73 +0.2 408,567 - AO353_01930 0.73 -0.4 408,567 - AO353_01930 0.73 +0.8 408,798 + -2.8 408,802 + -1.4 408,802 + -0.6 408,802 + -0.1 408,802 + +0.7 408,802 + +0.7 408,803 - +0.4 408,803 - -0.8 408,803 - -0.4 408,803 - -2.8 408,803 - -0.2 408,803 - -2.0 408,803 - -0.5 408,803 - -0.4 408,803 - +0.2 408,803 - +1.1 408,803 - +0.4 408,803 - +1.7 408,803 - -1.6 408,812 + -0.8 408,822 + +0.2 408,822 + +0.3 408,823 - +0.1 408,823 - +2.3 408,837 + -1.6 408,838 - +0.1 408,920 + -1.8 408,920 + -1.1 408,929 + +1.3 408,929 + +1.6 408,930 - -0.0 408,930 - +0.5 409,064 + +0.9 409,064 + +0.6 409,485 + AO353_01935 0.40 +1.0 409,510 + AO353_01935 0.42 +0.7 409,510 + AO353_01935 0.42 +0.5 409,510 + AO353_01935 0.42 +0.8 409,511 - AO353_01935 0.42 -0.6 409,511 - AO353_01935 0.42 +0.4 409,511 - AO353_01935 0.42 -1.9 409,511 - AO353_01935 0.42 +0.4 409,511 - AO353_01935 0.42 -2.1 409,511 - AO353_01935 0.42 -1.4 409,512 + AO353_01935 0.42 -0.6 409,512 + AO353_01935 0.42 +0.3 409,512 + AO353_01935 0.42 +1.4 409,512 + AO353_01935 0.42 -1.1 409,512 + AO353_01935 0.42 +1.2 409,512 + AO353_01935 0.42 -2.8 409,512 + AO353_01935 0.42 +1.0 409,512 + AO353_01935 0.42 -1.5 409,512 + AO353_01935 0.42 -0.6 409,512 + AO353_01935 0.42 +0.2 409,512 + AO353_01935 0.42 -0.4 409,513 - AO353_01935 0.42 -0.3 409,513 - AO353_01935 0.42 -0.0 409,513 - AO353_01935 0.42 -0.9 409,513 - AO353_01935 0.42 -0.5 409,513 - AO353_01935 0.42 -0.5 409,513 - AO353_01935 0.42 +1.9 409,513 - AO353_01935 0.42 -1.1 409,513 - AO353_01935 0.42 -0.3 409,513 - AO353_01935 0.42 +1.6 409,513 - AO353_01935 0.42 -1.1 409,516 + AO353_01935 0.42 +0.5 409,516 + AO353_01935 0.42 -1.0 409,516 + AO353_01935 0.42 -0.4 409,517 - AO353_01935 0.42 +0.9 409,517 - AO353_01935 0.42 -1.3 409,517 - AO353_01935 0.42 -0.8 409,682 + AO353_01935 0.55 -0.3 409,682 + AO353_01935 0.55 -0.3 409,682 + AO353_01935 0.55 +0.6 409,682 + AO353_01935 0.55 -0.0 409,683 - AO353_01935 0.55 +2.3 409,683 - AO353_01935 0.55 +0.4
Or see this region's nucleotide sequence