Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01910 and AO353_01915 are separated by 103 nucleotides AO353_01915 and AO353_01920 are separated by 267 nucleotides AO353_01920 and AO353_01925 are separated by 145 nucleotides
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
AO353_01915: AO353_01915 - GlcG protein, at 404,394 to 404,834
_01915
AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877
_01920
AO353_01925: AO353_01925 - hydroxypyruvate isomerase, at 407,023 to 407,805
_01925
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910 at 404.187 kb on - strand at 404.246 kb on + strand at 404.246 kb on + strand at 404.272 kb on + strand at 404.273 kb on - strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.385 kb on + strand at 404.386 kb on - strand at 404.386 kb on - strand at 404.585 kb on + strand, within AO353_01915 at 404.739 kb on + strand, within AO353_01915 at 404.740 kb on - strand, within AO353_01915 at 404.823 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.905 kb on - strand at 404.949 kb on - strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.282 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.976 kb on - strand, within AO353_01920 at 406.033 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.320 kb on + strand, within AO353_01920 at 406.321 kb on - strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.441 kb on - strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.498 kb on - strand, within AO353_01920 at 406.524 kb on + strand, within AO353_01920 at 406.525 kb on - strand, within AO353_01920 at 406.525 kb on - strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.570 kb on - strand, within AO353_01920 at 406.570 kb on - strand, within AO353_01920 at 406.637 kb on - strand, within AO353_01920 at 406.875 kb on + strand at 406.876 kb on - strand at 406.876 kb on - strand at 406.895 kb on + strand at 406.896 kb on - strand at 406.896 kb on - strand at 407.002 kb on + strand at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.552 kb on - strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.683 kb on + strand, within AO353_01925 at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.863 kb on + strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 404,138 + AO353_01910 0.86 +0.7 404,138 + AO353_01910 0.86 +0.7 404,139 - AO353_01910 0.86 -0.6 404,187 - -1.6 404,246 + +0.4 404,246 + -2.0 404,272 + +1.3 404,273 - +0.9 404,332 + -0.2 404,332 + -0.3 404,332 + +1.4 404,332 + -0.6 404,332 + -0.6 404,332 + -0.3 404,332 + +0.1 404,333 - +0.5 404,333 - -0.6 404,333 - -0.8 404,333 - +1.2 404,333 - +0.4 404,333 - -0.0 404,333 - -0.7 404,333 - -1.4 404,333 - -0.9 404,333 - +2.5 404,333 - -0.1 404,333 - -0.5 404,334 + +0.1 404,334 + +2.0 404,334 + -0.1 404,334 + -0.9 404,334 + +1.4 404,335 - -0.2 404,385 + +0.4 404,386 - +0.8 404,386 - +0.4 404,585 + AO353_01915 0.43 -0.3 404,739 + AO353_01915 0.78 +0.1 404,740 - AO353_01915 0.78 +0.4 404,823 + +3.7 404,847 + -1.3 404,847 + -0.3 404,847 + +1.2 404,847 + -1.4 404,848 - +0.1 404,848 - -0.8 404,848 - +0.8 404,905 - +0.1 404,949 - -0.6 404,975 + +0.2 404,975 + +0.4 404,975 + -1.5 404,975 + -2.9 404,975 + -1.5 404,976 - +1.4 404,976 - +0.9 404,976 - +2.1 404,979 + +0.1 404,979 + +0.6 404,979 + -1.5 404,979 + +1.2 404,980 - +0.7 404,980 - +0.4 404,980 - +3.0 404,980 - -1.8 404,980 - +1.5 404,980 - +0.1 404,980 - -2.6 405,045 + +0.4 405,045 + -0.1 405,045 + -0.9 405,045 + +0.2 405,045 + +1.5 405,045 + -0.7 405,045 + +0.7 405,045 + -0.6 405,045 + +0.8 405,045 + -1.6 405,046 - -0.3 405,046 - -1.2 405,046 - -0.6 405,046 - +1.0 405,046 - +0.4 405,046 - -0.6 405,046 - +0.0 405,046 - +0.8 405,202 - +0.7 405,202 - -1.2 405,202 - -1.9 405,282 + AO353_01920 0.10 -0.5 405,363 + AO353_01920 0.15 +0.5 405,363 + AO353_01920 0.15 -0.2 405,363 + AO353_01920 0.15 +0.3 405,523 - AO353_01920 0.24 +0.5 405,523 - AO353_01920 0.24 -0.0 405,543 + AO353_01920 0.25 -1.0 405,543 + AO353_01920 0.25 +1.2 405,543 + AO353_01920 0.25 +1.7 405,543 + AO353_01920 0.25 -0.1 405,543 + AO353_01920 0.25 +0.3 405,543 + AO353_01920 0.25 -0.0 405,543 + AO353_01920 0.25 -1.3 405,543 + AO353_01920 0.25 -1.3 405,543 + AO353_01920 0.25 -0.3 405,543 + AO353_01920 0.25 +0.6 405,543 + AO353_01920 0.25 -1.2 405,544 - AO353_01920 0.25 -0.3 405,544 - AO353_01920 0.25 -1.6 405,544 - AO353_01920 0.25 +1.2 405,544 - AO353_01920 0.25 +0.9 405,544 - AO353_01920 0.25 -1.6 405,544 - AO353_01920 0.25 -0.2 405,544 - AO353_01920 0.25 +0.5 405,544 - AO353_01920 0.25 -0.7 405,633 + AO353_01920 0.30 +0.4 405,633 + AO353_01920 0.30 +0.1 405,633 + AO353_01920 0.30 -0.3 405,634 - AO353_01920 0.30 +1.7 405,634 - AO353_01920 0.30 -0.8 405,634 - AO353_01920 0.30 -1.5 405,634 - AO353_01920 0.30 -0.6 405,976 - AO353_01920 0.49 +0.1 406,033 + AO353_01920 0.52 -0.6 406,227 + AO353_01920 0.63 +1.6 406,227 + AO353_01920 0.63 -0.5 406,227 + AO353_01920 0.63 -1.5 406,227 + AO353_01920 0.63 +1.6 406,228 - AO353_01920 0.63 +0.2 406,228 - AO353_01920 0.63 -0.8 406,228 - AO353_01920 0.63 +0.7 406,266 + AO353_01920 0.66 -2.1 406,266 + AO353_01920 0.66 +0.4 406,266 + AO353_01920 0.66 -0.4 406,266 + AO353_01920 0.66 +1.6 406,266 + AO353_01920 0.66 -1.5 406,267 - AO353_01920 0.66 +0.2 406,267 - AO353_01920 0.66 +0.5 406,267 - AO353_01920 0.66 -0.7 406,267 - AO353_01920 0.66 -1.1 406,267 - AO353_01920 0.66 -0.4 406,320 + AO353_01920 0.69 -0.0 406,321 - AO353_01920 0.69 +0.9 406,440 + AO353_01920 0.75 -1.8 406,440 + AO353_01920 0.75 -0.2 406,440 + AO353_01920 0.75 -2.4 406,441 - AO353_01920 0.75 +3.7 406,497 + AO353_01920 0.79 -0.0 406,497 + AO353_01920 0.79 -0.6 406,497 + AO353_01920 0.79 +0.9 406,497 + AO353_01920 0.79 -0.4 406,497 + AO353_01920 0.79 +0.0 406,497 + AO353_01920 0.79 -0.8 406,497 + AO353_01920 0.79 +2.0 406,498 - AO353_01920 0.79 -0.1 406,524 + AO353_01920 0.80 -0.8 406,525 - AO353_01920 0.80 -0.2 406,525 - AO353_01920 0.80 +0.4 406,569 + AO353_01920 0.83 -0.6 406,569 + AO353_01920 0.83 -0.2 406,569 + AO353_01920 0.83 +1.1 406,569 + AO353_01920 0.83 -0.2 406,569 + AO353_01920 0.83 +0.8 406,570 - AO353_01920 0.83 +0.1 406,570 - AO353_01920 0.83 +0.7 406,637 - AO353_01920 0.86 -0.3 406,875 + -0.2 406,876 - +1.1 406,876 - +0.2 406,895 + +1.5 406,896 - -2.7 406,896 - -0.9 407,002 + -2.1 407,122 + AO353_01925 0.13 +0.4 407,122 + AO353_01925 0.13 +0.9 407,122 + AO353_01925 0.13 -0.8 407,122 + AO353_01925 0.13 -0.1 407,122 + AO353_01925 0.13 +0.8 407,123 - AO353_01925 0.13 +0.6 407,123 - AO353_01925 0.13 +0.5 407,123 - AO353_01925 0.13 -1.5 407,299 + AO353_01925 0.35 +1.0 407,299 + AO353_01925 0.35 +1.0 407,300 - AO353_01925 0.35 +0.7 407,300 - AO353_01925 0.35 -0.3 407,300 - AO353_01925 0.35 +0.4 407,300 - AO353_01925 0.35 +0.7 407,404 + AO353_01925 0.49 -0.6 407,404 + AO353_01925 0.49 +0.1 407,404 + AO353_01925 0.49 -0.9 407,404 + AO353_01925 0.49 +0.1 407,404 + AO353_01925 0.49 -2.6 407,404 + AO353_01925 0.49 +0.4 407,404 + AO353_01925 0.49 +0.1 407,405 - AO353_01925 0.49 -1.1 407,405 - AO353_01925 0.49 -0.6 407,482 + AO353_01925 0.59 -0.6 407,482 + AO353_01925 0.59 -0.3 407,482 + AO353_01925 0.59 -0.2 407,482 + AO353_01925 0.59 -0.8 407,482 + AO353_01925 0.59 -0.6 407,482 + AO353_01925 0.59 -1.5 407,483 - AO353_01925 0.59 -1.1 407,483 - AO353_01925 0.59 +0.7 407,483 - AO353_01925 0.59 -1.4 407,483 - AO353_01925 0.59 -0.1 407,551 + AO353_01925 0.67 +0.5 407,551 + AO353_01925 0.67 -0.3 407,552 - AO353_01925 0.68 -0.5 407,560 + AO353_01925 0.69 +0.7 407,560 + AO353_01925 0.69 -1.0 407,560 + AO353_01925 0.69 -0.2 407,560 + AO353_01925 0.69 +0.8 407,560 + AO353_01925 0.69 -0.7 407,560 + AO353_01925 0.69 +1.0 407,560 + AO353_01925 0.69 -0.0 407,560 + AO353_01925 0.69 +0.1 407,560 + AO353_01925 0.69 -1.1 407,560 + AO353_01925 0.69 +1.9 407,560 + AO353_01925 0.69 +1.5 407,561 - AO353_01925 0.69 -1.1 407,561 - AO353_01925 0.69 -0.3 407,561 - AO353_01925 0.69 -0.2 407,561 - AO353_01925 0.69 -1.1 407,561 - AO353_01925 0.69 +0.8 407,561 - AO353_01925 0.69 +0.1 407,561 - AO353_01925 0.69 +0.8 407,561 - AO353_01925 0.69 +1.1 407,561 - AO353_01925 0.69 +0.4 407,561 - AO353_01925 0.69 +0.3 407,561 - AO353_01925 0.69 -0.9 407,683 + AO353_01925 0.84 -0.2 407,743 + -1.9 407,743 + +0.1 407,743 + -1.3 407,743 + +0.8 407,744 - -1.3 407,744 - -1.6 407,744 - +0.7 407,744 - +0.9 407,744 - +0.4 407,744 - +0.6 407,744 - +0.2 407,744 - +0.2 407,744 - +0.7 407,863 + +1.1 407,864 - +0.7 407,864 - +0.1 407,864 - +1.0 407,869 + +1.9 407,869 + -0.4 407,869 + +0.7 407,869 + +1.1 407,869 + +0.1 407,869 + +0.6 407,869 + -0.6 407,870 - -0.7
Or see this region's nucleotide sequence