Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01750

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01740 and AO353_01745 are separated by 1 nucleotidesAO353_01745 and AO353_01750 overlap by 4 nucleotidesAO353_01750 and AO353_01755 are separated by 246 nucleotidesAO353_01755 and AO353_01760 are separated by 11 nucleotides AO353_01740: AO353_01740 - TonB-dependent receptor, at 364,369 to 366,492 _01740 AO353_01745: AO353_01745 - ABC transporter substrate-binding protein, at 366,494 to 367,423 _01745 AO353_01750: AO353_01750 - histidine kinase, at 367,420 to 369,318 _01750 AO353_01755: AO353_01755 - 3-hydroxydecanoyl-ACP dehydratase, at 369,565 to 370,080 _01755 AO353_01760: AO353_01760 - 3-oxoacyl-ACP synthase, at 370,092 to 371,312 _01760 Position (kb) 367 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 366.445 kb on + strandat 366.445 kb on + strandat 366.446 kb on - strandat 366.446 kb on - strandat 366.466 kb on + strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.482 kb on + strandat 366.482 kb on + strandat 366.483 kb on - strandat 366.483 kb on - strandat 366.515 kb on - strandat 366.515 kb on - strandat 367.092 kb on + strand, within AO353_01745at 367.092 kb on + strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.160 kb on + strand, within AO353_01745at 367.160 kb on + strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.229 kb on + strand, within AO353_01745at 367.229 kb on + strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.326 kb on + strand, within AO353_01745at 367.326 kb on + strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.333 kb on + strandat 367.333 kb on + strandat 367.334 kb on - strandat 367.538 kb on + strandat 367.539 kb on - strandat 367.600 kb on + strandat 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.853 kb on - strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.957 kb on - strand, within AO353_01750at 368.344 kb on - strand, within AO353_01750at 368.689 kb on - strand, within AO353_01750at 368.975 kb on + strand, within AO353_01750at 368.975 kb on + strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 368.976 kb on - strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.012 kb on + strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.013 kb on - strand, within AO353_01750at 369.033 kb on + strand, within AO353_01750at 369.034 kb on - strand, within AO353_01750at 369.257 kb on - strandat 369.316 kb on + strandat 369.373 kb on + strandat 369.428 kb on + strandat 369.428 kb on + strandat 369.475 kb on + strandat 369.475 kb on + strandat 369.550 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
366,445 + +1.1
366,445 + -0.9
366,446 - -1.0
366,446 - +0.1
366,466 + +1.8
366,467 - -0.6
366,467 - +0.7
366,467 - -1.4
366,467 - -0.4
366,467 - -2.0
366,482 + -1.0
366,482 + +1.7
366,483 - -0.1
366,483 - -0.5
366,515 - +0.5
366,515 - +1.4
367,092 + AO353_01745 0.64 -0.6
367,092 + AO353_01745 0.64 -2.0
367,093 - AO353_01745 0.64 +2.1
367,093 - AO353_01745 0.64 -0.8
367,093 - AO353_01745 0.64 +0.5
367,093 - AO353_01745 0.64 -0.3
367,093 - AO353_01745 0.64 -0.8
367,121 + AO353_01745 0.67 -0.9
367,121 + AO353_01745 0.67 +0.5
367,121 + AO353_01745 0.67 -1.4
367,121 + AO353_01745 0.67 +0.5
367,121 + AO353_01745 0.67 -0.2
367,121 + AO353_01745 0.67 +0.1
367,121 + AO353_01745 0.67 -2.1
367,121 + AO353_01745 0.67 -0.1
367,121 + AO353_01745 0.67 -1.9
367,121 + AO353_01745 0.67 -0.0
367,121 + AO353_01745 0.67 -0.4
367,122 - AO353_01745 0.68 +0.4
367,122 - AO353_01745 0.68 -0.0
367,122 - AO353_01745 0.68 -0.1
367,122 - AO353_01745 0.68 +0.7
367,122 - AO353_01745 0.68 +0.1
367,122 - AO353_01745 0.68 +0.7
367,122 - AO353_01745 0.68 +1.7
367,160 + AO353_01745 0.72 -1.6
367,160 + AO353_01745 0.72 -1.8
367,161 - AO353_01745 0.72 -0.3
367,161 - AO353_01745 0.72 -1.9
367,161 - AO353_01745 0.72 -0.5
367,161 - AO353_01745 0.72 +0.4
367,161 - AO353_01745 0.72 -0.3
367,229 + AO353_01745 0.79 -0.9
367,229 + AO353_01745 0.79 -1.8
367,230 - AO353_01745 0.79 +0.7
367,230 - AO353_01745 0.79 +0.4
367,230 - AO353_01745 0.79 -0.2
367,230 - AO353_01745 0.79 -0.5
367,230 - AO353_01745 0.79 -0.2
367,230 - AO353_01745 0.79 -0.9
367,326 + AO353_01745 0.89 +0.7
367,326 + AO353_01745 0.89 -0.3
367,327 - AO353_01745 0.90 -0.9
367,327 - AO353_01745 0.90 -0.6
367,327 - AO353_01745 0.90 -0.6
367,327 - AO353_01745 0.90 +0.5
367,327 - AO353_01745 0.90 +0.7
367,329 + AO353_01745 0.90 +0.2
367,329 + AO353_01745 0.90 +0.5
367,329 + AO353_01745 0.90 -0.3
367,329 + AO353_01745 0.90 +0.7
367,329 + AO353_01745 0.90 +2.0
367,329 + AO353_01745 0.90 -1.6
367,329 + AO353_01745 0.90 -0.8
367,329 + AO353_01745 0.90 +0.1
367,329 + AO353_01745 0.90 -0.2
367,329 + AO353_01745 0.90 -1.3
367,329 + AO353_01745 0.90 -0.6
367,329 + AO353_01745 0.90 -2.5
367,329 + AO353_01745 0.90 +0.7
367,330 - AO353_01745 0.90 -0.1
367,330 - AO353_01745 0.90 +0.7
367,330 - AO353_01745 0.90 +0.4
367,330 - AO353_01745 0.90 -0.3
367,330 - AO353_01745 0.90 +0.6
367,330 - AO353_01745 0.90 -1.2
367,330 - AO353_01745 0.90 -2.0
367,330 - AO353_01745 0.90 +0.3
367,330 - AO353_01745 0.90 +0.1
367,330 - AO353_01745 0.90 -0.5
367,330 - AO353_01745 0.90 +0.2
367,333 + +0.1
367,333 + -0.3
367,334 - -2.3
367,538 + -0.9
367,539 - +0.1
367,600 + -0.2
367,852 + AO353_01750 0.23 -0.9
367,852 + AO353_01750 0.23 +1.1
367,852 + AO353_01750 0.23 +1.1
367,852 + AO353_01750 0.23 +0.9
367,853 - AO353_01750 0.23 +0.7
367,956 + AO353_01750 0.28 +0.7
367,956 + AO353_01750 0.28 +1.3
367,956 + AO353_01750 0.28 +0.5
367,957 - AO353_01750 0.28 -0.9
368,344 - AO353_01750 0.49 +1.0
368,689 - AO353_01750 0.67 -0.7
368,975 + AO353_01750 0.82 -0.6
368,975 + AO353_01750 0.82 -0.8
368,976 - AO353_01750 0.82 -1.9
368,976 - AO353_01750 0.82 +0.4
368,976 - AO353_01750 0.82 -2.1
368,976 - AO353_01750 0.82 -0.3
368,976 - AO353_01750 0.82 -1.5
368,976 - AO353_01750 0.82 +1.0
369,012 + AO353_01750 0.84 -1.0
369,012 + AO353_01750 0.84 -2.0
369,012 + AO353_01750 0.84 -2.2
369,012 + AO353_01750 0.84 +0.2
369,012 + AO353_01750 0.84 -1.6
369,012 + AO353_01750 0.84 +0.9
369,012 + AO353_01750 0.84 -1.9
369,013 - AO353_01750 0.84 +1.7
369,013 - AO353_01750 0.84 -1.4
369,013 - AO353_01750 0.84 -1.4
369,013 - AO353_01750 0.84 +0.7
369,013 - AO353_01750 0.84 -1.3
369,013 - AO353_01750 0.84 -1.2
369,013 - AO353_01750 0.84 +0.3
369,013 - AO353_01750 0.84 -0.1
369,013 - AO353_01750 0.84 +0.7
369,013 - AO353_01750 0.84 -0.9
369,033 + AO353_01750 0.85 -1.7
369,034 - AO353_01750 0.85 -1.5
369,257 - -0.3
369,316 + -1.8
369,373 + -2.8
369,428 + +1.2
369,428 + +1.2
369,475 + -0.9
369,475 + -0.3
369,550 + -0.3

Or see this region's nucleotide sequence