Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01685

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01680 and AO353_01685 are separated by 111 nucleotidesAO353_01685 and AO353_01690 are separated by 168 nucleotides AO353_01680: AO353_01680 - histidine kinase, at 353,571 to 354,611 _01680 AO353_01685: AO353_01685 - hypothetical protein, at 354,723 to 355,127 _01685 AO353_01690: AO353_01690 - hypothetical protein, at 355,296 to 356,348 _01690 Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2at 353.783 kb on - strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.951 kb on + strand, within AO353_01680at 353.952 kb on - strand, within AO353_01680at 353.952 kb on - strand, within AO353_01680at 354.150 kb on + strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.168 kb on - strand, within AO353_01680at 354.168 kb on - strand, within AO353_01680at 354.550 kb on + strandat 354.551 kb on - strandat 354.551 kb on - strandat 354.551 kb on - strandat 354.635 kb on - strandat 354.647 kb on + strandat 354.647 kb on + strandat 354.647 kb on + strandat 354.701 kb on + strandat 354.701 kb on + strandat 354.702 kb on - strandat 354.743 kb on + strandat 354.743 kb on + strandat 354.743 kb on + strandat 354.744 kb on - strandat 354.744 kb on - strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.754 kb on - strandat 354.754 kb on - strandat 354.754 kb on - strandat 354.755 kb on + strandat 354.755 kb on + strandat 354.756 kb on - strandat 354.777 kb on + strand, within AO353_01685at 354.778 kb on - strand, within AO353_01685at 354.866 kb on + strand, within AO353_01685at 354.866 kb on + strand, within AO353_01685at 355.131 kb on + strandat 355.143 kb on - strandat 355.352 kb on - strandat 355.352 kb on - strandat 355.471 kb on + strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.632 kb on - strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.933 kb on + strand, within AO353_01690at 355.934 kb on - strand, within AO353_01690at 356.109 kb on - strand, within AO353_01690

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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353,783 - AO353_01680 0.20 -1.1
353,801 + AO353_01680 0.22 -0.2
353,801 + AO353_01680 0.22 +0.1
353,801 + AO353_01680 0.22 +1.5
353,801 + AO353_01680 0.22 -1.3
353,801 + AO353_01680 0.22 +0.9
353,801 + AO353_01680 0.22 -1.1
353,801 + AO353_01680 0.22 +0.7
353,802 - AO353_01680 0.22 +0.9
353,802 - AO353_01680 0.22 -0.4
353,802 - AO353_01680 0.22 +0.2
353,802 - AO353_01680 0.22 -0.4
353,802 - AO353_01680 0.22 -0.2
353,951 + AO353_01680 0.37 -2.1
353,952 - AO353_01680 0.37 +2.0
353,952 - AO353_01680 0.37 +1.7
354,150 + AO353_01680 0.56 -1.2
354,151 - AO353_01680 0.56 -0.1
354,151 - AO353_01680 0.56 -2.0
354,151 - AO353_01680 0.56 -0.3
354,151 - AO353_01680 0.56 +0.4
354,167 + AO353_01680 0.57 +0.5
354,167 + AO353_01680 0.57 -0.9
354,167 + AO353_01680 0.57 +0.7
354,167 + AO353_01680 0.57 +0.2
354,168 - AO353_01680 0.57 -1.2
354,168 - AO353_01680 0.57 -0.1
354,550 + +0.2
354,551 - -0.5
354,551 - -1.6
354,551 - -0.9
354,635 - -1.3
354,647 + -1.6
354,647 + +1.6
354,647 + -2.6
354,701 + +0.0
354,701 + -0.2
354,702 - +1.4
354,743 + +0.5
354,743 + +0.5
354,743 + +1.1
354,744 - -1.8
354,744 - -1.3
354,753 + +0.7
354,753 + +0.9
354,753 + -1.3
354,753 + +0.1
354,753 + -1.0
354,753 + +1.1
354,754 - -0.5
354,754 - +1.4
354,754 - +0.3
354,755 + +0.5
354,755 + -1.8
354,756 - -0.1
354,777 + AO353_01685 0.13 -0.3
354,778 - AO353_01685 0.14 -1.6
354,866 + AO353_01685 0.35 +0.1
354,866 + AO353_01685 0.35 -1.1
355,131 + -0.5
355,143 - +1.0
355,352 - -0.3
355,352 - -0.6
355,471 + AO353_01690 0.17 -0.3
355,506 - AO353_01690 0.20 +1.7
355,506 - AO353_01690 0.20 -1.9
355,506 - AO353_01690 0.20 -0.6
355,632 - AO353_01690 0.32 -1.1
355,759 + AO353_01690 0.44 -0.1
355,759 + AO353_01690 0.44 -1.0
355,759 + AO353_01690 0.44 +0.5
355,759 + AO353_01690 0.44 -0.6
355,759 + AO353_01690 0.44 +1.1
355,759 + AO353_01690 0.44 +0.2
355,759 + AO353_01690 0.44 -0.4
355,759 + AO353_01690 0.44 +0.7
355,759 + AO353_01690 0.44 +0.0
355,760 - AO353_01690 0.44 +0.7
355,760 - AO353_01690 0.44 +1.7
355,760 - AO353_01690 0.44 +0.4
355,760 - AO353_01690 0.44 +1.9
355,760 - AO353_01690 0.44 +0.3
355,760 - AO353_01690 0.44 -1.0
355,760 - AO353_01690 0.44 -0.1
355,760 - AO353_01690 0.44 +0.9
355,933 + AO353_01690 0.60 -0.6
355,934 - AO353_01690 0.61 +0.9
356,109 - AO353_01690 0.77 +0.5

Or see this region's nucleotide sequence