Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01405

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01395 and AO353_01400 are separated by 21 nucleotidesAO353_01400 and AO353_01405 overlap by 11 nucleotidesAO353_01405 and AO353_01410 are separated by 740 nucleotides AO353_01395: AO353_01395 - peptidase S49, at 298,334 to 299,323 _01395 AO353_01400: AO353_01400 - HAD family hydrolase, at 299,345 to 300,007 _01400 AO353_01405: AO353_01405 - 23S rRNA pseudouridylate synthase, at 299,997 to 300,956 _01405 AO353_01410: AO353_01410 - ribonuclease E, at 301,697 to 304,882 _01410 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 299.097 kb on + strand, within AO353_01395at 299.097 kb on + strand, within AO353_01395at 299.128 kb on + strand, within AO353_01395at 299.169 kb on + strand, within AO353_01395at 299.346 kb on + strandat 299.346 kb on + strandat 299.346 kb on + strandat 299.346 kb on + strandat 299.347 kb on - strandat 299.347 kb on - strandat 299.347 kb on - strandat 299.445 kb on + strand, within AO353_01400at 299.445 kb on + strand, within AO353_01400at 299.445 kb on + strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.620 kb on - strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.773 kb on - strand, within AO353_01400at 299.773 kb on - strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.785 kb on - strand, within AO353_01400at 299.785 kb on - strand, within AO353_01400at 299.829 kb on + strand, within AO353_01400at 299.894 kb on + strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.994 kb on + strandat 299.994 kb on + strandat 299.995 kb on - strandat 299.995 kb on - strandat 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.163 kb on + strand, within AO353_01405at 300.164 kb on - strand, within AO353_01405at 300.164 kb on - strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.423 kb on - strand, within AO353_01405at 300.423 kb on - strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.425 kb on - strand, within AO353_01405at 300.425 kb on - strand, within AO353_01405at 300.589 kb on + strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.776 kb on - strand, within AO353_01405at 300.878 kb on + strandat 300.879 kb on - strandat 300.879 kb on - strandat 300.884 kb on + strandat 300.885 kb on - strandat 300.885 kb on - strandat 300.898 kb on + strandat 300.899 kb on - strandat 300.899 kb on - strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.996 kb on + strandat 301.009 kb on + strandat 301.142 kb on + strandat 301.142 kb on + strandat 301.142 kb on + strandat 301.189 kb on + strandat 301.212 kb on + strandat 301.216 kb on + strandat 301.216 kb on + strandat 301.287 kb on + strandat 301.287 kb on + strandat 301.330 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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299,097 + AO353_01395 0.77 -1.6
299,097 + AO353_01395 0.77 +0.4
299,128 + AO353_01395 0.80 -0.7
299,169 + AO353_01395 0.84 -0.9
299,346 + +2.1
299,346 + -0.1
299,346 + +0.3
299,346 + -2.0
299,347 - -0.9
299,347 - +0.1
299,347 - -0.3
299,445 + AO353_01400 0.15 +1.1
299,445 + AO353_01400 0.15 +0.7
299,445 + AO353_01400 0.15 +0.2
299,446 - AO353_01400 0.15 +0.9
299,446 - AO353_01400 0.15 +1.3
299,446 - AO353_01400 0.15 -0.3
299,446 - AO353_01400 0.15 -1.4
299,446 - AO353_01400 0.15 +1.1
299,446 - AO353_01400 0.15 +2.7
299,446 - AO353_01400 0.15 +0.1
299,619 + AO353_01400 0.41 -1.6
299,619 + AO353_01400 0.41 -0.9
299,619 + AO353_01400 0.41 +1.3
299,619 + AO353_01400 0.41 +0.8
299,620 - AO353_01400 0.41 -1.1
299,772 + AO353_01400 0.64 -2.3
299,772 + AO353_01400 0.64 -0.4
299,772 + AO353_01400 0.64 -2.2
299,772 + AO353_01400 0.64 -1.2
299,772 + AO353_01400 0.64 -0.1
299,772 + AO353_01400 0.64 +2.3
299,773 - AO353_01400 0.65 -0.1
299,773 - AO353_01400 0.65 -0.7
299,784 + AO353_01400 0.66 -0.2
299,784 + AO353_01400 0.66 +1.7
299,784 + AO353_01400 0.66 +1.1
299,784 + AO353_01400 0.66 -0.8
299,785 - AO353_01400 0.66 -0.2
299,785 - AO353_01400 0.66 +0.7
299,829 + AO353_01400 0.73 +0.5
299,894 + AO353_01400 0.83 +0.6
299,895 - AO353_01400 0.83 -0.1
299,895 - AO353_01400 0.83 +0.3
299,895 - AO353_01400 0.83 +0.4
299,994 + -1.5
299,994 + +0.3
299,995 - +2.4
299,995 - +1.2
300,097 + AO353_01405 0.10 -0.9
300,097 + AO353_01405 0.10 +1.9
300,097 + AO353_01405 0.10 +2.5
300,097 + AO353_01405 0.10 +2.1
300,097 + AO353_01405 0.10 +2.2
300,098 - AO353_01405 0.11 +1.9
300,098 - AO353_01405 0.11 +3.6
300,098 - AO353_01405 0.11 +4.2
300,098 - AO353_01405 0.11 +3.1
300,098 - AO353_01405 0.11 +2.2
300,098 - AO353_01405 0.11 +2.0
300,098 - AO353_01405 0.11 +2.6
300,098 - AO353_01405 0.11 +2.5
300,098 - AO353_01405 0.11 +3.0
300,163 + AO353_01405 0.17 +1.8
300,164 - AO353_01405 0.17 +2.8
300,164 - AO353_01405 0.17 +3.8
300,422 + AO353_01405 0.44 +3.3
300,422 + AO353_01405 0.44 +1.4
300,422 + AO353_01405 0.44 -0.3
300,423 - AO353_01405 0.44 +2.8
300,423 - AO353_01405 0.44 +3.9
300,424 + AO353_01405 0.44 +1.7
300,424 + AO353_01405 0.44 -0.1
300,424 + AO353_01405 0.44 +2.3
300,425 - AO353_01405 0.45 +3.9
300,425 - AO353_01405 0.45 +3.6
300,589 + AO353_01405 0.62 +1.8
300,590 - AO353_01405 0.62 +4.3
300,590 - AO353_01405 0.62 +3.1
300,590 - AO353_01405 0.62 +3.3
300,776 - AO353_01405 0.81 +3.7
300,878 + +1.3
300,879 - +2.3
300,879 - +2.0
300,884 + -1.1
300,885 - +2.8
300,885 - +3.5
300,898 + +0.7
300,899 - +2.5
300,899 - +3.4
300,924 + -1.1
300,924 + +0.7
300,924 + +0.8
300,924 + +0.9
300,924 + -0.1
300,925 - +2.8
300,925 - +3.3
300,925 - +2.3
300,925 - +2.8
300,925 - +3.7
300,925 - +3.5
300,925 - +4.9
300,996 + -2.2
301,009 + -1.5
301,142 + +1.2
301,142 + -0.4
301,142 + +1.5
301,189 + -1.1
301,212 + +1.1
301,216 + +0.5
301,216 + -1.6
301,287 + +0.2
301,287 + +0.3
301,330 + -1.4
301,366 + -1.3
301,366 + -0.3
301,366 + +1.0
301,366 + +0.5

Or see this region's nucleotide sequence