Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01370 and AO353_01375 are separated by 126 nucleotides AO353_01375 and AO353_01380 are separated by 33 nucleotides AO353_01380 and AO353_01385 are separated by 13 nucleotides AO353_01385 and AO353_01390 are separated by 105 nucleotides
AO353_01370: AO353_01370 - malonyl CoA-ACP transacylase, at 294,782 to 295,720
_01370
AO353_01375: AO353_01375 - phosphate acyltransferase, at 295,847 to 296,827
_01375
AO353_01380: AO353_01380 - 50S ribosomal protein L32, at 296,861 to 297,043
_01380
AO353_01385: AO353_01385 - metal-binding protein, at 297,057 to 297,584
_01385
AO353_01390: AO353_01390 - septum formation inhibitor Maf, at 297,690 to 298,268
_01390
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 295.767 kb on - strand at 295.802 kb on - strand at 295.802 kb on - strand at 295.824 kb on + strand at 295.824 kb on + strand at 295.824 kb on + strand at 295.824 kb on + strand at 295.825 kb on - strand at 295.825 kb on - strand at 295.825 kb on - strand at 295.825 kb on - strand at 295.825 kb on - strand at 295.825 kb on - strand at 295.849 kb on - strand at 295.943 kb on + strand at 295.943 kb on + strand at 295.943 kb on + strand at 295.943 kb on + strand at 295.944 kb on - strand at 295.944 kb on - strand at 295.944 kb on - strand at 295.966 kb on + strand, within AO353_01375 at 295.966 kb on + strand, within AO353_01375 at 295.967 kb on - strand, within AO353_01375 at 296.005 kb on + strand, within AO353_01375 at 296.005 kb on + strand, within AO353_01375 at 296.005 kb on + strand, within AO353_01375 at 296.006 kb on - strand at 296.006 kb on - strand, within AO353_01375 at 296.034 kb on - strand, within AO353_01375 at 296.034 kb on - strand, within AO353_01375 at 296.202 kb on + strand, within AO353_01375 at 296.203 kb on - strand, within AO353_01375 at 296.232 kb on + strand, within AO353_01375 at 296.232 kb on + strand, within AO353_01375 at 296.232 kb on + strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.233 kb on - strand, within AO353_01375 at 296.508 kb on + strand, within AO353_01375 at 296.508 kb on + strand, within AO353_01375 at 296.509 kb on - strand, within AO353_01375 at 296.509 kb on - strand, within AO353_01375 at 296.724 kb on - strand, within AO353_01375 at 296.768 kb on - strand at 297.689 kb on + strand at 297.690 kb on - strand at 297.690 kb on - strand at 297.690 kb on - strand at 297.690 kb on - strand at 297.700 kb on + strand at 297.700 kb on + strand at 297.700 kb on + strand at 297.701 kb on - strand at 297.703 kb on + strand at 297.703 kb on + strand at 297.703 kb on + strand at 297.703 kb on + strand at 297.703 kb on + strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.704 kb on - strand at 297.736 kb on + strand at 297.737 kb on - strand at 297.737 kb on - strand at 297.737 kb on - strand at 297.761 kb on + strand, within AO353_01390 at 297.762 kb on - strand, within AO353_01390 at 297.762 kb on - strand, within AO353_01390 at 297.824 kb on - strand, within AO353_01390 at 297.824 kb on - strand, within AO353_01390 at 297.824 kb on - strand, within AO353_01390
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 295,767 - -0.7 295,802 - +1.1 295,802 - +1.4 295,824 + +2.9 295,824 + +3.8 295,824 + +3.6 295,824 + +2.8 295,825 - +0.4 295,825 - -0.9 295,825 - +0.2 295,825 - -2.5 295,825 - +0.4 295,825 - -0.9 295,849 - -1.3 295,943 + +1.0 295,943 + +1.2 295,943 + +0.7 295,943 + -0.9 295,944 - -0.7 295,944 - -0.3 295,944 - -0.3 295,966 + AO353_01375 0.12 +2.3 295,966 + AO353_01375 0.12 +1.2 295,967 - AO353_01375 0.12 -1.0 296,005 + AO353_01375 0.16 +0.4 296,005 + AO353_01375 0.16 -0.3 296,005 + AO353_01375 0.16 +0.9 296,006 - +2.7 296,006 - AO353_01375 0.16 +0.3 296,034 - AO353_01375 0.19 -0.3 296,034 - AO353_01375 0.19 +0.8 296,202 + AO353_01375 0.36 -1.5 296,203 - AO353_01375 0.36 -1.2 296,232 + AO353_01375 0.39 +1.2 296,232 + AO353_01375 0.39 +0.9 296,232 + AO353_01375 0.39 +0.8 296,233 - AO353_01375 0.39 +0.3 296,233 - AO353_01375 0.39 +0.9 296,233 - AO353_01375 0.39 -0.7 296,233 - AO353_01375 0.39 +1.1 296,233 - AO353_01375 0.39 -0.4 296,233 - AO353_01375 0.39 +0.5 296,508 + AO353_01375 0.67 +0.3 296,508 + AO353_01375 0.67 +0.7 296,509 - AO353_01375 0.67 +0.3 296,509 - AO353_01375 0.67 +1.8 296,724 - AO353_01375 0.89 +0.4 296,768 - +0.2 297,689 + +0.4 297,690 - -2.5 297,690 - -0.3 297,690 - +2.8 297,690 - -0.1 297,700 + -0.3 297,700 + +0.3 297,700 + +1.4 297,701 - +3.3 297,703 + +0.1 297,703 + +1.4 297,703 + +1.5 297,703 + +0.3 297,703 + +1.0 297,704 - -0.8 297,704 - +1.1 297,704 - -0.8 297,704 - +0.3 297,704 - -0.9 297,704 - -2.2 297,704 - -0.0 297,704 - +0.7 297,704 - -1.0 297,704 - +0.1 297,704 - +0.7 297,736 + +3.0 297,737 - +0.2 297,737 - -0.7 297,737 - +0.7 297,761 + AO353_01390 0.12 +2.3 297,762 - AO353_01390 0.12 -2.4 297,762 - AO353_01390 0.12 -0.5 297,824 - AO353_01390 0.23 +0.1 297,824 - AO353_01390 0.23 +0.6 297,824 - AO353_01390 0.23 +1.2
Or see this region's nucleotide sequence