Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01325 and AO353_01330 are separated by 12 nucleotides AO353_01330 and AO353_01335 are separated by 42 nucleotides AO353_01335 and AO353_01340 overlap by 8 nucleotides AO353_01340 and AO353_01345 are separated by 19 nucleotides
AO353_01325: AO353_01325 - hydrolase TatD, at 287,395 to 288,183
_01325
AO353_01330: AO353_01330 - pilus assembly protein PilZ, at 288,196 to 288,552
_01330
AO353_01335: AO353_01335 - DNA polymerase III subunit delta', at 288,595 to 289,581
_01335
AO353_01340: AO353_01340 - thymidylate kinase, at 289,574 to 290,206
_01340
AO353_01345: AO353_01345 - aminodeoxychorismate lyase, at 290,226 to 291,416
_01345
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.664 kb on + strand, within AO353_01325 at 287.664 kb on + strand, within AO353_01325 at 287.665 kb on - strand, within AO353_01325 at 287.666 kb on + strand, within AO353_01325 at 287.667 kb on - strand, within AO353_01325 at 287.667 kb on - strand, within AO353_01325 at 287.769 kb on + strand, within AO353_01325 at 287.879 kb on + strand, within AO353_01325 at 287.879 kb on + strand, within AO353_01325 at 287.885 kb on + strand, within AO353_01325 at 287.886 kb on - strand, within AO353_01325 at 288.018 kb on - strand, within AO353_01325 at 288.175 kb on + strand at 288.175 kb on + strand at 288.175 kb on + strand at 288.176 kb on - strand at 288.176 kb on - strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.184 kb on - strand at 288.184 kb on - strand at 288.184 kb on - strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.242 kb on + strand, within AO353_01330 at 288.242 kb on + strand, within AO353_01330 at 288.334 kb on - strand, within AO353_01330 at 288.400 kb on + strand, within AO353_01330 at 288.400 kb on + strand, within AO353_01330 at 288.401 kb on - strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.420 kb on - strand, within AO353_01330 at 288.420 kb on - strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.479 kb on + strand, within AO353_01330 at 288.582 kb on + strand at 288.582 kb on + strand at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 287,664 + AO353_01325 0.34 -2.7 287,664 + AO353_01325 0.34 +0.1 287,665 - AO353_01325 0.34 -0.5 287,666 + AO353_01325 0.34 -1.8 287,667 - AO353_01325 0.34 +0.6 287,667 - AO353_01325 0.34 +0.1 287,769 + AO353_01325 0.47 +0.9 287,879 + AO353_01325 0.61 -1.5 287,879 + AO353_01325 0.61 -0.9 287,885 + AO353_01325 0.62 +0.3 287,886 - AO353_01325 0.62 +0.7 288,018 - AO353_01325 0.79 -1.3 288,175 + +1.7 288,175 + +0.7 288,175 + +1.0 288,176 - -0.7 288,176 - -1.0 288,183 + -0.5 288,183 + -0.3 288,183 + +0.1 288,183 + -1.2 288,184 - -0.7 288,184 - -1.4 288,184 - -1.5 288,197 + -0.2 288,197 + +1.1 288,197 + -0.9 288,197 + +0.9 288,197 + +0.0 288,197 + +0.1 288,197 + -0.9 288,197 + -0.1 288,198 - -0.0 288,198 - -0.2 288,198 - +0.9 288,198 - +1.1 288,198 - -1.1 288,198 - +2.3 288,198 - -2.3 288,198 - +1.2 288,198 - -1.1 288,198 - +0.1 288,198 - -0.3 288,204 + +0.9 288,204 + -0.4 288,204 + +0.5 288,204 + -2.3 288,204 + +0.7 288,204 + -2.6 288,204 + -0.1 288,204 + -0.1 288,204 + -1.6 288,204 + +0.3 288,204 + -0.7 288,204 + +0.9 288,205 - +0.1 288,205 - +2.4 288,205 - -0.5 288,205 - -1.8 288,205 - +0.7 288,205 - -1.9 288,205 - +1.7 288,205 - +0.4 288,205 - +1.0 288,205 - -0.8 288,205 - +2.7 288,205 - -1.1 288,205 - +1.1 288,205 - -2.1 288,242 + AO353_01330 0.13 -1.4 288,242 + AO353_01330 0.13 +1.3 288,334 - AO353_01330 0.39 -0.0 288,400 + AO353_01330 0.57 -1.3 288,400 + AO353_01330 0.57 +1.1 288,401 - AO353_01330 0.57 -0.3 288,419 + AO353_01330 0.62 +0.5 288,419 + AO353_01330 0.62 +0.9 288,419 + AO353_01330 0.62 -1.3 288,419 + AO353_01330 0.62 +0.4 288,419 + AO353_01330 0.62 -0.2 288,420 - AO353_01330 0.63 +0.7 288,420 - AO353_01330 0.63 -1.2 288,470 + AO353_01330 0.77 +1.2 288,470 + AO353_01330 0.77 -0.8 288,470 + AO353_01330 0.77 -0.7 288,470 + AO353_01330 0.77 +0.4 288,470 + AO353_01330 0.77 +0.1 288,471 - AO353_01330 0.77 -0.7 288,471 - AO353_01330 0.77 +0.7 288,471 - AO353_01330 0.77 +0.7 288,471 - AO353_01330 0.77 -1.1 288,471 - -0.9 288,471 - AO353_01330 0.77 +0.6 288,471 - AO353_01330 0.77 +1.5 288,471 - AO353_01330 0.77 -2.0 288,479 + AO353_01330 0.79 +0.6 288,582 + -0.7 288,582 + -0.7 290,504 - AO353_01345 0.23 -1.1 290,504 - AO353_01345 0.23 +0.5 290,504 - AO353_01345 0.23 -0.5 290,504 - AO353_01345 0.23 +1.3 290,506 - AO353_01345 0.24 -0.6 290,506 - AO353_01345 0.24 +1.0 290,506 - AO353_01345 0.24 -0.0
Or see this region's nucleotide sequence