Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01220

Experiment: Rifampicin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01215 and AO353_01220 overlap by 4 nucleotidesAO353_01220 and AO353_01225 are separated by 9 nucleotidesAO353_01225 and AO353_01230 are separated by 81 nucleotides AO353_01215: AO353_01215 - hypothetical protein, at 267,069 to 267,881 _01215 AO353_01220: AO353_01220 - hypothetical protein, at 267,878 to 268,234 _01220 AO353_01225: AO353_01225 - ABC transporter substrate-binding protein, at 268,244 to 269,068 _01225 AO353_01230: AO353_01230 - electron transfer flavoprotein subunit beta, at 269,150 to 270,079 _01230 Position (kb) 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 266.885 kb on + strandat 266.886 kb on - strandat 266.886 kb on - strandat 266.886 kb on - strandat 266.886 kb on - strandat 266.944 kb on + strandat 266.945 kb on - strandat 266.954 kb on + strandat 266.954 kb on + strandat 266.954 kb on + strandat 266.955 kb on - strandat 266.955 kb on - strandat 266.955 kb on - strandat 266.955 kb on - strandat 266.955 kb on - strandat 266.955 kb on - strandat 267.203 kb on + strand, within AO353_01215at 267.203 kb on + strand, within AO353_01215at 267.203 kb on + strand, within AO353_01215at 267.203 kb on + strand, within AO353_01215at 267.203 kb on + strand, within AO353_01215at 267.204 kb on - strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.222 kb on + strand, within AO353_01215at 267.223 kb on - strand, within AO353_01215at 267.223 kb on - strand, within AO353_01215at 267.223 kb on - strand, within AO353_01215at 267.223 kb on - strand, within AO353_01215at 267.302 kb on - strand, within AO353_01215at 267.361 kb on - strand, within AO353_01215at 267.361 kb on - strand, within AO353_01215at 267.361 kb on - strand, within AO353_01215at 267.361 kb on - strand, within AO353_01215at 267.361 kb on - strand, within AO353_01215at 267.488 kb on + strand, within AO353_01215at 267.488 kb on + strand, within AO353_01215at 267.489 kb on - strand, within AO353_01215at 267.489 kb on - strand, within AO353_01215at 267.489 kb on - strand, within AO353_01215at 267.619 kb on + strand, within AO353_01215at 267.619 kb on + strand, within AO353_01215at 267.619 kb on + strand, within AO353_01215at 267.620 kb on - strand, within AO353_01215at 267.634 kb on + strand, within AO353_01215at 267.634 kb on + strand, within AO353_01215at 267.634 kb on + strand, within AO353_01215at 267.634 kb on + strand, within AO353_01215at 267.634 kb on + strand, within AO353_01215at 267.635 kb on - strand, within AO353_01215at 267.635 kb on - strand, within AO353_01215at 267.640 kb on + strand, within AO353_01215at 267.640 kb on + strand, within AO353_01215at 267.641 kb on - strand, within AO353_01215at 267.641 kb on - strand, within AO353_01215at 267.641 kb on - strand, within AO353_01215at 267.647 kb on + strand, within AO353_01215at 267.648 kb on - strand, within AO353_01215at 267.670 kb on + strand, within AO353_01215at 267.670 kb on + strand, within AO353_01215at 267.670 kb on + strand, within AO353_01215at 267.670 kb on + strand, within AO353_01215at 267.670 kb on + strand, within AO353_01215at 267.671 kb on - strand, within AO353_01215at 267.671 kb on - strand, within AO353_01215at 267.671 kb on - strand, within AO353_01215at 267.671 kb on - strand, within AO353_01215at 267.913 kb on + strandat 267.914 kb on - strand, within AO353_01220at 267.914 kb on - strand, within AO353_01220at 267.914 kb on - strand, within AO353_01220at 267.914 kb on - strand, within AO353_01220at 268.235 kb on + strandat 268.443 kb on + strand, within AO353_01225at 268.496 kb on - strand, within AO353_01225at 268.497 kb on + strand, within AO353_01225at 268.498 kb on - strand, within AO353_01225at 268.515 kb on + strand, within AO353_01225at 268.515 kb on + strand, within AO353_01225at 268.515 kb on + strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.516 kb on - strand, within AO353_01225at 268.596 kb on + strand, within AO353_01225at 268.596 kb on + strand, within AO353_01225at 268.597 kb on - strand, within AO353_01225at 268.597 kb on - strand, within AO353_01225at 268.597 kb on - strand, within AO353_01225at 268.674 kb on + strand, within AO353_01225at 268.674 kb on + strand, within AO353_01225at 268.674 kb on + strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.675 kb on - strand, within AO353_01225at 268.710 kb on + strand, within AO353_01225at 268.711 kb on - strand, within AO353_01225at 268.711 kb on - strand, within AO353_01225at 268.740 kb on + strand, within AO353_01225at 268.740 kb on + strand, within AO353_01225at 268.740 kb on + strand, within AO353_01225at 268.741 kb on - strand, within AO353_01225at 268.741 kb on - strand, within AO353_01225at 268.795 kb on + strand, within AO353_01225at 268.944 kb on + strandat 268.944 kb on + strand, within AO353_01225at 268.944 kb on + strand, within AO353_01225at 268.945 kb on - strand, within AO353_01225at 268.945 kb on - strand, within AO353_01225at 268.945 kb on - strand, within AO353_01225at 268.945 kb on - strand, within AO353_01225at 268.945 kb on - strand, within AO353_01225at 269.102 kb on - strandat 269.102 kb on - strandat 269.131 kb on + strandat 269.131 kb on + strandat 269.131 kb on + strandat 269.131 kb on + strandat 269.131 kb on + strandat 269.132 kb on - strandat 269.132 kb on - strandat 269.132 kb on - strandat 269.132 kb on - strandat 269.132 kb on - strandat 269.132 kb on - strandat 269.133 kb on + strandat 269.134 kb on - strandat 269.134 kb on - strandat 269.134 kb on - strandat 269.151 kb on + strandat 269.151 kb on + strandat 269.151 kb on + strandat 269.152 kb on - strandat 269.152 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
remove
266,885 + -0.9
266,886 - +3.2
266,886 - -0.2
266,886 - +1.2
266,886 - +0.2
266,944 + -1.0
266,945 - -0.7
266,954 + -0.5
266,954 + +0.3
266,954 + +0.7
266,955 - +0.7
266,955 - -1.0
266,955 - -0.5
266,955 - -1.2
266,955 - +1.4
266,955 - -1.1
267,203 + AO353_01215 0.16 -0.7
267,203 + AO353_01215 0.16 -0.3
267,203 + AO353_01215 0.16 -0.1
267,203 + AO353_01215 0.16 -2.5
267,203 + AO353_01215 0.16 -1.7
267,204 - AO353_01215 0.17 -1.3
267,222 + AO353_01215 0.19 -0.9
267,222 + AO353_01215 0.19 -1.9
267,222 + AO353_01215 0.19 -0.8
267,222 + AO353_01215 0.19 -1.7
267,222 + AO353_01215 0.19 -1.9
267,222 + AO353_01215 0.19 -0.9
267,222 + AO353_01215 0.19 +0.1
267,222 + AO353_01215 0.19 -0.6
267,222 + AO353_01215 0.19 -0.9
267,222 + AO353_01215 0.19 -1.7
267,223 - AO353_01215 0.19 -0.3
267,223 - AO353_01215 0.19 -0.1
267,223 - AO353_01215 0.19 -1.1
267,223 - AO353_01215 0.19 -1.1
267,302 - AO353_01215 0.29 -0.9
267,361 - AO353_01215 0.36 -2.2
267,361 - AO353_01215 0.36 +0.6
267,361 - AO353_01215 0.36 -1.3
267,361 - AO353_01215 0.36 +1.1
267,361 - AO353_01215 0.36 -0.4
267,488 + AO353_01215 0.52 -1.3
267,488 + AO353_01215 0.52 -1.2
267,489 - AO353_01215 0.52 -1.8
267,489 - AO353_01215 0.52 -0.9
267,489 - AO353_01215 0.52 -0.2
267,619 + AO353_01215 0.68 -0.3
267,619 + AO353_01215 0.68 -1.8
267,619 + AO353_01215 0.68 -2.2
267,620 - AO353_01215 0.68 -2.0
267,634 + AO353_01215 0.69 -0.5
267,634 + AO353_01215 0.69 -0.8
267,634 + AO353_01215 0.69 -2.9
267,634 + AO353_01215 0.69 -1.3
267,634 + AO353_01215 0.69 -0.6
267,635 - AO353_01215 0.70 -1.4
267,635 - AO353_01215 0.70 -0.8
267,640 + AO353_01215 0.70 -2.8
267,640 + AO353_01215 0.70 -1.2
267,641 - AO353_01215 0.70 -1.1
267,641 - AO353_01215 0.70 -1.5
267,641 - AO353_01215 0.70 -0.7
267,647 + AO353_01215 0.71 -1.3
267,648 - AO353_01215 0.71 -1.8
267,670 + AO353_01215 0.74 -0.9
267,670 + AO353_01215 0.74 -0.5
267,670 + AO353_01215 0.74 -0.1
267,670 + AO353_01215 0.74 -1.5
267,670 + AO353_01215 0.74 -1.3
267,671 - AO353_01215 0.74 -0.9
267,671 - AO353_01215 0.74 -1.7
267,671 - AO353_01215 0.74 +0.3
267,671 - AO353_01215 0.74 +0.3
267,913 + -1.3
267,914 - AO353_01220 0.10 -3.0
267,914 - AO353_01220 0.10 -0.3
267,914 - AO353_01220 0.10 -2.4
267,914 - AO353_01220 0.10 -2.7
268,235 + -1.0
268,443 + AO353_01225 0.24 +0.4
268,496 - AO353_01225 0.31 +1.5
268,497 + AO353_01225 0.31 +1.2
268,498 - AO353_01225 0.31 +1.7
268,515 + AO353_01225 0.33 +0.1
268,515 + AO353_01225 0.33 +0.3
268,515 + AO353_01225 0.33 +1.0
268,516 - AO353_01225 0.33 +0.3
268,516 - AO353_01225 0.33 -0.7
268,516 - AO353_01225 0.33 +1.3
268,516 - AO353_01225 0.33 -0.1
268,516 - AO353_01225 0.33 +0.3
268,516 - AO353_01225 0.33 -0.2
268,596 + AO353_01225 0.43 +0.7
268,596 + AO353_01225 0.43 +1.5
268,597 - AO353_01225 0.43 -1.3
268,597 - AO353_01225 0.43 +1.6
268,597 - AO353_01225 0.43 -0.1
268,674 + AO353_01225 0.52 -0.8
268,674 + AO353_01225 0.52 -0.3
268,674 + AO353_01225 0.52 +0.1
268,675 - AO353_01225 0.52 +0.2
268,675 - AO353_01225 0.52 +1.9
268,675 - AO353_01225 0.52 -1.3
268,675 - AO353_01225 0.52 +2.3
268,675 - AO353_01225 0.52 +0.9
268,675 - AO353_01225 0.52 +1.3
268,675 - AO353_01225 0.52 +0.9
268,710 + AO353_01225 0.56 -0.8
268,711 - AO353_01225 0.57 +2.4
268,711 - AO353_01225 0.57 -0.0
268,740 + AO353_01225 0.60 +1.4
268,740 + AO353_01225 0.60 -0.0
268,740 + AO353_01225 0.60 -0.7
268,741 - AO353_01225 0.60 +0.1
268,741 - AO353_01225 0.60 +0.9
268,795 + AO353_01225 0.67 -1.7
268,944 + -0.9
268,944 + AO353_01225 0.85 +0.7
268,944 + AO353_01225 0.85 -0.7
268,945 - AO353_01225 0.85 -1.3
268,945 - AO353_01225 0.85 +0.9
268,945 - AO353_01225 0.85 +0.8
268,945 - AO353_01225 0.85 -0.7
268,945 - AO353_01225 0.85 +1.3
269,102 - +0.1
269,102 - -0.0
269,131 + +0.1
269,131 + +1.5
269,131 + -0.1
269,131 + +0.2
269,131 + -1.2
269,132 - -0.1
269,132 - -0.1
269,132 - +1.4
269,132 - -0.3
269,132 - +0.1
269,132 - -1.0
269,133 + -0.7
269,134 - +0.9
269,134 - +0.1
269,134 - +0.8
269,151 + -0.6
269,151 + +0.8
269,151 + +1.3
269,152 - -0.8
269,152 - -0.3

Or see this region's nucleotide sequence