Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01205

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01195 and AO353_01200 are separated by 41 nucleotidesAO353_01200 and AO353_01205 are separated by 167 nucleotidesAO353_01205 and AO353_01210 are separated by 91 nucleotides AO353_01195: AO353_01195 - hypothetical protein, at 263,753 to 264,358 _01195 AO353_01200: AO353_01200 - hypothetical protein, at 264,400 to 264,654 _01200 AO353_01205: AO353_01205 - translation initiation factor 2, at 264,822 to 265,325 _01205 AO353_01210: AO353_01210 - GntR family transcriptional regulator, at 265,417 to 266,856 _01210 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.840 kb on - strand, within AO353_01195at 263.865 kb on + strand, within AO353_01195at 263.866 kb on - strand, within AO353_01195at 263.866 kb on - strand, within AO353_01195at 263.866 kb on - strand, within AO353_01195at 263.866 kb on - strand, within AO353_01195at 263.958 kb on + strand, within AO353_01195at 263.958 kb on + strand, within AO353_01195at 263.958 kb on + strandat 263.959 kb on - strand, within AO353_01195at 263.959 kb on - strand, within AO353_01195at 263.959 kb on - strand, within AO353_01195at 263.959 kb on - strand, within AO353_01195at 263.959 kb on - strand, within AO353_01195at 263.959 kb on - strand, within AO353_01195at 263.980 kb on + strand, within AO353_01195at 263.980 kb on + strand, within AO353_01195at 263.981 kb on - strand, within AO353_01195at 263.981 kb on - strand, within AO353_01195at 264.013 kb on + strand, within AO353_01195at 264.014 kb on - strand, within AO353_01195at 264.014 kb on - strand, within AO353_01195at 264.072 kb on + strand, within AO353_01195at 264.072 kb on + strand, within AO353_01195at 264.072 kb on + strand, within AO353_01195at 264.073 kb on - strand, within AO353_01195at 264.073 kb on - strand, within AO353_01195at 264.073 kb on - strand, within AO353_01195at 264.073 kb on - strand, within AO353_01195at 264.210 kb on + strand, within AO353_01195at 264.219 kb on + strand, within AO353_01195at 264.220 kb on - strand, within AO353_01195at 264.220 kb on - strand, within AO353_01195at 264.220 kb on - strand, within AO353_01195at 264.340 kb on + strandat 264.340 kb on + strandat 264.358 kb on + strandat 264.359 kb on - strandat 264.359 kb on - strandat 264.364 kb on + strandat 264.364 kb on + strandat 264.364 kb on + strandat 264.364 kb on + strandat 264.365 kb on - strandat 264.365 kb on - strandat 264.365 kb on - strandat 264.365 kb on - strandat 264.372 kb on - strandat 264.372 kb on - strandat 264.372 kb on - strandat 264.372 kb on - strandat 264.401 kb on + strandat 264.402 kb on - strandat 264.402 kb on - strandat 264.402 kb on - strandat 264.525 kb on + strand, within AO353_01200at 264.526 kb on - strand, within AO353_01200at 264.679 kb on - strandat 264.700 kb on + strandat 264.700 kb on + strandat 264.701 kb on - strandat 264.701 kb on - strandat 264.701 kb on - strandat 264.701 kb on - strandat 264.701 kb on - strandat 264.739 kb on + strandat 264.768 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.990 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.014 kb on + strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.015 kb on - strand, within AO353_01205at 265.069 kb on + strand, within AO353_01205at 265.069 kb on + strand, within AO353_01205at 265.069 kb on + strand, within AO353_01205at 265.069 kb on + strand, within AO353_01205at 265.069 kb on + strand, within AO353_01205at 265.070 kb on - strand, within AO353_01205at 265.070 kb on - strand, within AO353_01205at 265.070 kb on - strand, within AO353_01205at 265.070 kb on - strand, within AO353_01205at 265.070 kb on - strandat 265.150 kb on - strand, within AO353_01205at 265.150 kb on - strand, within AO353_01205at 265.150 kb on - strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.173 kb on + strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strandat 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.174 kb on - strand, within AO353_01205at 265.332 kb on + strandat 265.332 kb on + strandat 265.332 kb on + strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.333 kb on - strandat 265.356 kb on + strandat 265.356 kb on + strandat 265.356 kb on + strandat 265.357 kb on - strandat 265.357 kb on - strandat 265.357 kb on - strandat 265.371 kb on + strandat 265.371 kb on + strandat 265.371 kb on + strandat 265.372 kb on - strandat 265.372 kb on - strandat 265.393 kb on + strandat 265.393 kb on + strandat 265.394 kb on - strandat 265.614 kb on + strand, within AO353_01210at 265.615 kb on - strand, within AO353_01210at 265.642 kb on + strand, within AO353_01210at 265.642 kb on + strand, within AO353_01210at 265.642 kb on + strand, within AO353_01210at 265.642 kb on + strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.643 kb on - strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.691 kb on + strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.692 kb on - strand, within AO353_01210at 265.700 kb on - strand, within AO353_01210at 265.734 kb on - strand, within AO353_01210at 265.748 kb on + strand, within AO353_01210at 265.766 kb on + strand, within AO353_01210at 265.784 kb on + strand, within AO353_01210at 265.784 kb on + strand, within AO353_01210at 265.785 kb on - strand, within AO353_01210at 265.785 kb on - strand, within AO353_01210at 265.862 kb on + strand, within AO353_01210at 265.863 kb on - strand, within AO353_01210at 265.863 kb on - strand, within AO353_01210at 265.863 kb on - strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.928 kb on + strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.929 kb on - strand, within AO353_01210at 265.952 kb on + strand, within AO353_01210at 265.952 kb on + strand, within AO353_01210at 265.952 kb on + strand, within AO353_01210at 265.953 kb on - strandat 265.953 kb on - strand, within AO353_01210at 266.000 kb on + strand, within AO353_01210at 266.000 kb on + strand, within AO353_01210at 266.004 kb on + strand, within AO353_01210at 266.004 kb on + strand, within AO353_01210at 266.005 kb on - strand, within AO353_01210at 266.005 kb on - strand, within AO353_01210at 266.005 kb on - strand, within AO353_01210at 266.240 kb on + strand, within AO353_01210at 266.240 kb on + strand, within AO353_01210at 266.240 kb on + strand, within AO353_01210at 266.241 kb on - strand, within AO353_01210at 266.241 kb on - strand, within AO353_01210at 266.243 kb on + strand, within AO353_01210at 266.243 kb on + strand, within AO353_01210at 266.244 kb on - strand, within AO353_01210at 266.244 kb on - strand, within AO353_01210at 266.244 kb on - strand, within AO353_01210at 266.244 kb on - strand, within AO353_01210

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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263,840 - AO353_01195 0.14 -0.3
263,865 + AO353_01195 0.18 +0.1
263,866 - AO353_01195 0.19 +0.4
263,866 - AO353_01195 0.19 -0.3
263,866 - AO353_01195 0.19 -0.7
263,866 - AO353_01195 0.19 -0.6
263,958 + AO353_01195 0.34 -0.1
263,958 + AO353_01195 0.34 +0.0
263,958 + +0.1
263,959 - AO353_01195 0.34 -0.3
263,959 - AO353_01195 0.34 +0.7
263,959 - AO353_01195 0.34 +0.7
263,959 - AO353_01195 0.34 -0.3
263,959 - AO353_01195 0.34 +0.3
263,959 - AO353_01195 0.34 -2.0
263,980 + AO353_01195 0.37 -1.0
263,980 + AO353_01195 0.37 -0.6
263,981 - AO353_01195 0.38 -1.7
263,981 - AO353_01195 0.38 -0.8
264,013 + AO353_01195 0.43 +0.1
264,014 - AO353_01195 0.43 -1.8
264,014 - AO353_01195 0.43 +0.2
264,072 + AO353_01195 0.53 +1.1
264,072 + AO353_01195 0.53 +0.1
264,072 + AO353_01195 0.53 -2.1
264,073 - AO353_01195 0.53 -1.3
264,073 - AO353_01195 0.53 -1.3
264,073 - AO353_01195 0.53 -1.1
264,073 - AO353_01195 0.53 +0.3
264,210 + AO353_01195 0.75 -1.8
264,219 + AO353_01195 0.77 +0.4
264,220 - AO353_01195 0.77 +0.1
264,220 - AO353_01195 0.77 +0.3
264,220 - AO353_01195 0.77 +0.2
264,340 + -1.1
264,340 + -0.9
264,358 + +0.1
264,359 - +0.2
264,359 - +0.9
264,364 + +0.7
264,364 + -2.2
264,364 + +0.2
264,364 + -0.0
264,365 - -0.1
264,365 - +0.1
264,365 - -1.5
264,365 - -1.9
264,372 - -1.7
264,372 - -0.9
264,372 - +0.1
264,372 - -0.1
264,401 + -0.3
264,402 - -0.3
264,402 - -0.7
264,402 - -1.5
264,525 + AO353_01200 0.49 +0.3
264,526 - AO353_01200 0.49 +1.1
264,679 - -0.5
264,700 + -0.0
264,700 + -0.5
264,701 - +0.2
264,701 - +0.1
264,701 - +1.3
264,701 - +0.0
264,701 - -0.3
264,739 + +0.1
264,768 + +0.4
264,830 + -0.6
264,830 + +0.5
264,830 + -0.7
264,830 + -0.1
264,990 + AO353_01205 0.33 -2.0
265,014 + AO353_01205 0.38 -2.9
265,014 + AO353_01205 0.38 -0.9
265,014 + AO353_01205 0.38 -1.5
265,014 + AO353_01205 0.38 -0.6
265,014 + AO353_01205 0.38 +0.2
265,014 + AO353_01205 0.38 +0.7
265,015 - AO353_01205 0.38 -0.7
265,015 - AO353_01205 0.38 -0.9
265,015 - AO353_01205 0.38 +0.2
265,015 - AO353_01205 0.38 -3.4
265,015 - AO353_01205 0.38 -2.7
265,015 - AO353_01205 0.38 -2.5
265,069 + AO353_01205 0.49 -1.7
265,069 + AO353_01205 0.49 -0.8
265,069 + AO353_01205 0.49 -1.2
265,069 + AO353_01205 0.49 -1.1
265,069 + AO353_01205 0.49 -1.1
265,070 - AO353_01205 0.49 -1.5
265,070 - AO353_01205 0.49 +0.4
265,070 - AO353_01205 0.49 -0.8
265,070 - AO353_01205 0.49 +1.3
265,070 - -0.3
265,150 - AO353_01205 0.65 -1.2
265,150 - AO353_01205 0.65 -0.8
265,150 - AO353_01205 0.65 +0.8
265,173 + AO353_01205 0.70 -0.0
265,173 + AO353_01205 0.70 -0.3
265,173 + AO353_01205 0.70 -1.3
265,173 + AO353_01205 0.70 -1.9
265,173 + AO353_01205 0.70 -1.9
265,173 + AO353_01205 0.70 -2.3
265,174 - AO353_01205 0.70 -2.0
265,174 - AO353_01205 0.70 -1.4
265,174 - +1.7
265,174 - AO353_01205 0.70 -2.7
265,174 - AO353_01205 0.70 -1.7
265,174 - AO353_01205 0.70 -2.1
265,174 - AO353_01205 0.70 +1.1
265,174 - AO353_01205 0.70 -1.2
265,174 - AO353_01205 0.70 +0.9
265,332 + -0.7
265,332 + -1.1
265,332 + -0.1
265,333 - -2.0
265,333 - -0.5
265,333 - -2.0
265,333 - -0.1
265,333 - -1.8
265,333 - +1.7
265,333 - +0.7
265,356 + -1.1
265,356 + -1.1
265,356 + +1.1
265,357 - -0.7
265,357 - +0.9
265,357 - -0.3
265,371 + -1.3
265,371 + -3.3
265,371 + -0.4
265,372 - -0.6
265,372 - -1.9
265,393 + -1.2
265,393 + +0.9
265,394 - -1.1
265,614 + AO353_01210 0.14 +1.1
265,615 - AO353_01210 0.14 +1.1
265,642 + AO353_01210 0.16 -0.5
265,642 + AO353_01210 0.16 -1.5
265,642 + AO353_01210 0.16 +0.1
265,642 + AO353_01210 0.16 +0.8
265,643 - AO353_01210 0.16 +0.4
265,643 - AO353_01210 0.16 +0.2
265,643 - AO353_01210 0.16 -0.4
265,643 - AO353_01210 0.16 +0.3
265,643 - AO353_01210 0.16 +0.1
265,643 - AO353_01210 0.16 +0.7
265,691 + AO353_01210 0.19 +0.3
265,691 + AO353_01210 0.19 +1.5
265,691 + AO353_01210 0.19 -1.7
265,691 + AO353_01210 0.19 -0.3
265,691 + AO353_01210 0.19 +0.1
265,691 + AO353_01210 0.19 -0.5
265,691 + AO353_01210 0.19 +0.4
265,691 + AO353_01210 0.19 +1.0
265,691 + AO353_01210 0.19 +0.5
265,691 + AO353_01210 0.19 -0.5
265,692 - AO353_01210 0.19 +0.1
265,692 - AO353_01210 0.19 +1.2
265,692 - AO353_01210 0.19 -0.9
265,692 - AO353_01210 0.19 +2.2
265,692 - AO353_01210 0.19 -0.3
265,692 - AO353_01210 0.19 +0.4
265,692 - AO353_01210 0.19 +0.1
265,692 - AO353_01210 0.19 -0.5
265,700 - AO353_01210 0.20 +0.6
265,734 - AO353_01210 0.22 -0.0
265,748 + AO353_01210 0.23 -0.1
265,766 + AO353_01210 0.24 +0.7
265,784 + AO353_01210 0.25 +0.2
265,784 + AO353_01210 0.25 -0.9
265,785 - AO353_01210 0.26 +0.2
265,785 - AO353_01210 0.26 -0.8
265,862 + AO353_01210 0.31 -2.3
265,863 - AO353_01210 0.31 -0.4
265,863 - AO353_01210 0.31 -1.1
265,863 - AO353_01210 0.31 -0.1
265,928 + AO353_01210 0.35 +0.7
265,928 + AO353_01210 0.35 -1.8
265,928 + AO353_01210 0.35 -0.3
265,928 + AO353_01210 0.35 +1.7
265,928 + AO353_01210 0.35 +0.9
265,928 + AO353_01210 0.35 +0.8
265,928 + AO353_01210 0.35 -0.7
265,928 + AO353_01210 0.35 -1.1
265,928 + AO353_01210 0.35 +0.7
265,928 + AO353_01210 0.35 +0.3
265,928 + AO353_01210 0.35 +0.1
265,928 + AO353_01210 0.35 +0.4
265,928 + AO353_01210 0.35 -0.1
265,929 - AO353_01210 0.36 +1.2
265,929 - AO353_01210 0.36 +0.4
265,929 - AO353_01210 0.36 -0.5
265,929 - AO353_01210 0.36 +0.2
265,929 - AO353_01210 0.36 +1.2
265,929 - AO353_01210 0.36 +0.4
265,929 - AO353_01210 0.36 +0.1
265,929 - AO353_01210 0.36 +0.7
265,929 - AO353_01210 0.36 -0.5
265,929 - AO353_01210 0.36 -0.4
265,929 - AO353_01210 0.36 -0.5
265,929 - AO353_01210 0.36 +2.7
265,929 - AO353_01210 0.36 +0.1
265,929 - AO353_01210 0.36 -1.5
265,929 - AO353_01210 0.36 +0.9
265,929 - AO353_01210 0.36 -1.5
265,929 - AO353_01210 0.36 +0.3
265,952 + AO353_01210 0.37 -0.2
265,952 + AO353_01210 0.37 +0.1
265,952 + AO353_01210 0.37 +0.2
265,953 - -1.5
265,953 - AO353_01210 0.37 +1.8
266,000 + AO353_01210 0.40 -1.2
266,000 + AO353_01210 0.40 -1.8
266,004 + AO353_01210 0.41 -0.2
266,004 + AO353_01210 0.41 +0.1
266,005 - AO353_01210 0.41 +0.5
266,005 - AO353_01210 0.41 -0.3
266,005 - AO353_01210 0.41 -0.1
266,240 + AO353_01210 0.57 -0.1
266,240 + AO353_01210 0.57 -0.5
266,240 + AO353_01210 0.57 -0.9
266,241 - AO353_01210 0.57 -0.2
266,241 - AO353_01210 0.57 -1.4
266,243 + AO353_01210 0.57 -0.3
266,243 + AO353_01210 0.57 +1.2
266,244 - AO353_01210 0.57 +0.2
266,244 - AO353_01210 0.57 -0.9
266,244 - AO353_01210 0.57 -0.5
266,244 - AO353_01210 0.57 -1.8

Or see this region's nucleotide sequence