Experiment: Rifampicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00860 and AO353_00865 are separated by 101 nucleotides AO353_00865 and AO353_00870 overlap by 42 nucleotides AO353_00870 and AO353_00875 are separated by 14 nucleotides
AO353_00860: AO353_00860 - EstX protein, at 194,043 to 195,032
_00860
AO353_00865: AO353_00865 - phosphoenolpyruvate synthase, at 195,134 to 197,509
_00865
AO353_00870: AO353_00870 - hypothetical protein, at 197,468 to 197,671
_00870
AO353_00875: AO353_00875 - transcriptional regulator, at 197,686 to 198,504
_00875
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.371 kb on + strand, within AO353_00860 at 194.372 kb on - strand, within AO353_00860 at 194.509 kb on + strand, within AO353_00860 at 194.509 kb on + strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.510 kb on - strand, within AO353_00860 at 194.569 kb on + strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.570 kb on - strand, within AO353_00860 at 194.689 kb on + strand, within AO353_00860 at 194.789 kb on - strand, within AO353_00860 at 194.919 kb on + strand, within AO353_00860 at 194.919 kb on + strand, within AO353_00860 at 195.032 kb on + strand at 195.077 kb on + strand at 195.271 kb on + strand at 195.271 kb on + strand at 195.272 kb on - strand at 195.272 kb on - strand at 195.272 kb on - strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.279 kb on + strand at 195.280 kb on - strand at 195.280 kb on - strand at 195.280 kb on - strand at 195.295 kb on + strand at 195.295 kb on + strand at 195.296 kb on - strand at 195.681 kb on + strand, within AO353_00865 at 195.682 kb on - strand, within AO353_00865 at 195.682 kb on - strand, within AO353_00865 at 195.733 kb on - strand, within AO353_00865 at 195.760 kb on - strand, within AO353_00865 at 195.855 kb on + strand, within AO353_00865 at 195.856 kb on - strand, within AO353_00865 at 195.856 kb on - strand, within AO353_00865 at 195.876 kb on + strand, within AO353_00865 at 195.930 kb on + strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 195.931 kb on - strand, within AO353_00865 at 196.247 kb on - strand, within AO353_00865 at 196.264 kb on + strand, within AO353_00865 at 196.265 kb on - strand, within AO353_00865 at 196.402 kb on + strand, within AO353_00865 at 196.470 kb on + strand, within AO353_00865 at 196.533 kb on + strand, within AO353_00865 at 196.533 kb on + strand, within AO353_00865 at 196.533 kb on + strand, within AO353_00865 at 196.533 kb on + strand, within AO353_00865 at 196.533 kb on + strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.534 kb on - strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.587 kb on + strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.588 kb on - strand, within AO353_00865 at 196.719 kb on + strand, within AO353_00865 at 196.719 kb on + strand, within AO353_00865 at 196.719 kb on + strand, within AO353_00865 at 196.800 kb on + strand, within AO353_00865 at 196.801 kb on - strand, within AO353_00865 at 196.829 kb on + strand, within AO353_00865 at 196.830 kb on - strand, within AO353_00865 at 196.830 kb on - strand, within AO353_00865 at 196.830 kb on - strand, within AO353_00865 at 196.864 kb on + strand, within AO353_00865 at 196.911 kb on - strand, within AO353_00865 at 196.949 kb on + strand, within AO353_00865 at 196.949 kb on + strand, within AO353_00865 at 196.975 kb on + strand, within AO353_00865 at 196.976 kb on - strand, within AO353_00865 at 196.976 kb on - strand, within AO353_00865 at 196.976 kb on - strand, within AO353_00865 at 197.002 kb on - strand, within AO353_00865 at 197.036 kb on + strand, within AO353_00865 at 197.036 kb on + strand, within AO353_00865 at 197.037 kb on - strand, within AO353_00865 at 197.037 kb on - strand, within AO353_00865 at 197.037 kb on - strand, within AO353_00865 at 197.037 kb on - strand, within AO353_00865 at 197.037 kb on - strand, within AO353_00865 at 197.339 kb on + strand at 197.340 kb on - strand at 197.358 kb on + strand at 197.416 kb on + strand at 197.417 kb on - strand at 197.417 kb on - strand at 197.417 kb on - strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.462 kb on + strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.463 kb on - strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.499 kb on + strand at 197.499 kb on + strand at 197.499 kb on + strand at 197.499 kb on + strand at 197.499 kb on + strand at 197.499 kb on + strand at 197.500 kb on - strand at 197.500 kb on - strand at 197.504 kb on + strand at 197.504 kb on + strand at 197.504 kb on + strand at 197.505 kb on - strand at 197.505 kb on - strand at 197.505 kb on - strand at 197.505 kb on - strand at 197.505 kb on - strand at 197.505 kb on - strand at 197.525 kb on - strand, within AO353_00870 at 197.581 kb on + strand, within AO353_00870 at 197.582 kb on - strand, within AO353_00870 at 197.582 kb on - strand, within AO353_00870 at 197.601 kb on + strand, within AO353_00870 at 197.602 kb on - strand, within AO353_00870 at 197.602 kb on - strand, within AO353_00870 at 197.642 kb on + strand, within AO353_00870 at 197.642 kb on + strand at 197.643 kb on - strand, within AO353_00870 at 197.643 kb on - strand, within AO353_00870 at 197.643 kb on - strand, within AO353_00870 at 197.648 kb on - strand, within AO353_00870 at 197.669 kb on + strand at 197.707 kb on - strand at 197.707 kb on - strand at 197.727 kb on + strand at 197.728 kb on - strand at 197.728 kb on - strand at 197.775 kb on + strand, within AO353_00875 at 197.792 kb on + strand, within AO353_00875 at 197.793 kb on - strand, within AO353_00875 at 197.793 kb on - strand, within AO353_00875 at 197.793 kb on - strand, within AO353_00875 at 197.800 kb on + strand, within AO353_00875 at 197.800 kb on + strand, within AO353_00875 at 197.801 kb on - strand, within AO353_00875 at 197.801 kb on - strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.834 kb on + strand, within AO353_00875 at 197.835 kb on - strand, within AO353_00875 at 197.835 kb on - strand, within AO353_00875 at 197.835 kb on - strand, within AO353_00875 at 197.835 kb on - strand, within AO353_00875 at 197.907 kb on + strand, within AO353_00875 at 197.908 kb on - strand, within AO353_00875 at 197.908 kb on - strand, within AO353_00875 at 198.004 kb on + strand, within AO353_00875 at 198.005 kb on - strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.046 kb on + strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.047 kb on - strand, within AO353_00875 at 198.109 kb on + strand, within AO353_00875 at 198.110 kb on - strand, within AO353_00875 at 198.110 kb on - strand, within AO353_00875 at 198.112 kb on + strand, within AO353_00875 at 198.113 kb on - strand, within AO353_00875 at 198.175 kb on + strand, within AO353_00875 at 198.175 kb on + strand, within AO353_00875 at 198.175 kb on + strand, within AO353_00875 at 198.175 kb on + strand, within AO353_00875 at 198.176 kb on - strand, within AO353_00875 at 198.176 kb on - strand, within AO353_00875 at 198.358 kb on + strand, within AO353_00875 at 198.358 kb on + strand, within AO353_00875 at 198.359 kb on - strand, within AO353_00875 at 198.502 kb on + strand at 198.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml remove 194,371 + AO353_00860 0.33 -2.3 194,372 - AO353_00860 0.33 +1.0 194,509 + AO353_00860 0.47 -1.1 194,509 + AO353_00860 0.47 -0.3 194,510 - AO353_00860 0.47 +0.8 194,510 - AO353_00860 0.47 -0.9 194,510 - AO353_00860 0.47 +1.1 194,510 - AO353_00860 0.47 +0.7 194,569 + AO353_00860 0.53 -0.3 194,570 - AO353_00860 0.53 +0.3 194,570 - AO353_00860 0.53 -1.2 194,570 - AO353_00860 0.53 -1.2 194,689 + AO353_00860 0.65 -0.6 194,789 - AO353_00860 0.75 -1.1 194,919 + AO353_00860 0.88 -0.9 194,919 + AO353_00860 0.88 -0.4 195,032 + -1.7 195,077 + +0.1 195,271 + -0.9 195,271 + -1.3 195,272 - +0.4 195,272 - -1.1 195,272 - +1.3 195,279 + -0.9 195,279 + -0.3 195,279 + +2.7 195,279 + -2.4 195,279 + -0.3 195,280 - +0.1 195,280 - +1.3 195,280 - -0.3 195,295 + -0.9 195,295 + -2.0 195,296 - -0.1 195,681 + AO353_00865 0.23 -1.3 195,682 - AO353_00865 0.23 -0.8 195,682 - AO353_00865 0.23 -0.0 195,733 - AO353_00865 0.25 -1.3 195,760 - AO353_00865 0.26 -0.3 195,855 + AO353_00865 0.30 +1.1 195,856 - AO353_00865 0.30 -1.3 195,856 - AO353_00865 0.30 -0.8 195,876 + AO353_00865 0.31 -0.7 195,930 + AO353_00865 0.34 -1.7 195,931 - AO353_00865 0.34 -1.3 195,931 - AO353_00865 0.34 -1.7 195,931 - AO353_00865 0.34 -1.1 195,931 - AO353_00865 0.34 +0.4 196,247 - AO353_00865 0.47 -0.9 196,264 + AO353_00865 0.48 -0.3 196,265 - AO353_00865 0.48 -0.1 196,402 + AO353_00865 0.53 +1.7 196,470 + AO353_00865 0.56 -1.7 196,533 + AO353_00865 0.59 -0.7 196,533 + AO353_00865 0.59 -2.2 196,533 + AO353_00865 0.59 -2.5 196,533 + AO353_00865 0.59 -0.4 196,533 + AO353_00865 0.59 -0.3 196,534 - AO353_00865 0.59 +1.1 196,534 - AO353_00865 0.59 -1.3 196,534 - AO353_00865 0.59 -0.2 196,534 - AO353_00865 0.59 -1.5 196,534 - AO353_00865 0.59 -0.7 196,534 - AO353_00865 0.59 -0.7 196,534 - AO353_00865 0.59 -0.9 196,587 + AO353_00865 0.61 -0.9 196,587 + AO353_00865 0.61 -1.5 196,587 + AO353_00865 0.61 -0.3 196,587 + AO353_00865 0.61 -0.4 196,587 + AO353_00865 0.61 +0.3 196,587 + AO353_00865 0.61 -1.5 196,587 + AO353_00865 0.61 +2.0 196,588 - AO353_00865 0.61 -0.2 196,588 - AO353_00865 0.61 +2.4 196,588 - AO353_00865 0.61 +1.1 196,588 - AO353_00865 0.61 +0.1 196,588 - AO353_00865 0.61 -1.2 196,588 - AO353_00865 0.61 +0.7 196,719 + AO353_00865 0.67 +0.3 196,719 + AO353_00865 0.67 -2.0 196,719 + AO353_00865 0.67 -2.9 196,800 + AO353_00865 0.70 -0.1 196,801 - AO353_00865 0.70 -1.5 196,829 + AO353_00865 0.71 -1.5 196,830 - AO353_00865 0.71 +0.8 196,830 - AO353_00865 0.71 -1.7 196,830 - AO353_00865 0.71 -1.1 196,864 + AO353_00865 0.73 +0.2 196,911 - AO353_00865 0.75 -2.5 196,949 + AO353_00865 0.76 -0.9 196,949 + AO353_00865 0.76 +0.9 196,975 + AO353_00865 0.77 -1.1 196,976 - AO353_00865 0.78 -1.1 196,976 - AO353_00865 0.78 -0.3 196,976 - AO353_00865 0.78 -0.3 197,002 - AO353_00865 0.79 +0.1 197,036 + AO353_00865 0.80 -0.3 197,036 + AO353_00865 0.80 -1.5 197,037 - AO353_00865 0.80 +0.3 197,037 - AO353_00865 0.80 -1.1 197,037 - AO353_00865 0.80 -0.9 197,037 - AO353_00865 0.80 -2.5 197,037 - AO353_00865 0.80 +0.7 197,339 + -0.7 197,340 - -1.3 197,358 + +0.2 197,416 + -2.6 197,417 - +0.7 197,417 - +0.3 197,417 - +0.3 197,462 + -0.7 197,462 + +0.9 197,462 + -1.8 197,462 + -1.7 197,462 + -0.9 197,462 + +1.3 197,462 + -0.3 197,462 + +0.0 197,462 + -1.7 197,463 - +0.4 197,463 - -0.3 197,463 - -0.5 197,463 - -1.8 197,463 - -1.5 197,463 - -0.3 197,463 - +0.1 197,463 - +0.7 197,463 - -1.7 197,463 - -0.3 197,463 - -0.9 197,463 - +0.7 197,495 + -1.4 197,495 + -1.3 197,495 + +1.7 197,495 + -0.7 197,495 + -0.1 197,495 + -0.7 197,495 + -1.6 197,495 + -1.3 197,495 + -0.7 197,495 + -1.3 197,495 + +0.2 197,495 + -1.9 197,496 - -0.1 197,496 - +1.3 197,496 - -1.9 197,496 - -1.1 197,496 - -1.0 197,496 - -0.7 197,496 - +2.3 197,496 - +0.7 197,499 + -0.7 197,499 + +1.2 197,499 + -0.3 197,499 + -0.7 197,499 + -2.8 197,499 + -1.8 197,500 - -1.1 197,500 - -1.6 197,504 + -1.1 197,504 + +0.1 197,504 + -0.5 197,505 - +0.3 197,505 - -1.5 197,505 - -0.9 197,505 - +0.8 197,505 - -0.5 197,505 - -0.9 197,525 - AO353_00870 0.28 +0.8 197,581 + AO353_00870 0.55 +0.1 197,582 - AO353_00870 0.56 -1.8 197,582 - AO353_00870 0.56 +1.0 197,601 + AO353_00870 0.65 -0.3 197,602 - AO353_00870 0.66 +0.7 197,602 - AO353_00870 0.66 +2.0 197,642 + AO353_00870 0.85 -0.1 197,642 + +1.7 197,643 - AO353_00870 0.86 +0.5 197,643 - AO353_00870 0.86 -0.5 197,643 - AO353_00870 0.86 -0.5 197,648 - AO353_00870 0.88 +1.1 197,669 + -0.9 197,707 - +0.8 197,707 - -0.3 197,727 + -0.8 197,728 - +0.3 197,728 - -0.2 197,775 + AO353_00875 0.11 -0.7 197,792 + AO353_00875 0.13 +0.7 197,793 - AO353_00875 0.13 +0.7 197,793 - AO353_00875 0.13 -0.2 197,793 - AO353_00875 0.13 +0.9 197,800 + AO353_00875 0.14 -0.7 197,800 + AO353_00875 0.14 -1.4 197,801 - AO353_00875 0.14 +0.3 197,801 - AO353_00875 0.14 +0.5 197,834 + AO353_00875 0.18 +1.2 197,834 + AO353_00875 0.18 +0.9 197,834 + AO353_00875 0.18 -0.3 197,834 + AO353_00875 0.18 +2.3 197,834 + AO353_00875 0.18 -1.3 197,834 + AO353_00875 0.18 -0.7 197,834 + AO353_00875 0.18 +0.5 197,835 - AO353_00875 0.18 -0.9 197,835 - AO353_00875 0.18 +1.3 197,835 - AO353_00875 0.18 -0.7 197,835 - AO353_00875 0.18 -0.0 197,907 + AO353_00875 0.27 -1.9 197,908 - AO353_00875 0.27 -0.0 197,908 - AO353_00875 0.27 +2.1 198,004 + AO353_00875 0.39 -0.3 198,005 - AO353_00875 0.39 +1.7 198,046 + AO353_00875 0.44 +0.8 198,046 + AO353_00875 0.44 -1.2 198,046 + AO353_00875 0.44 -0.5 198,046 + AO353_00875 0.44 +0.2 198,046 + AO353_00875 0.44 -0.9 198,046 + AO353_00875 0.44 +0.3 198,046 + AO353_00875 0.44 -1.9 198,046 + AO353_00875 0.44 +2.0 198,046 + AO353_00875 0.44 -0.8 198,046 + AO353_00875 0.44 +0.9 198,047 - AO353_00875 0.44 +0.1 198,047 - AO353_00875 0.44 +1.2 198,047 - AO353_00875 0.44 +0.5 198,047 - AO353_00875 0.44 +1.2 198,047 - AO353_00875 0.44 -0.1 198,047 - AO353_00875 0.44 +0.1 198,109 + AO353_00875 0.52 +0.1 198,110 - AO353_00875 0.52 -0.8 198,110 - AO353_00875 0.52 +0.7 198,112 + AO353_00875 0.52 -0.3 198,113 - AO353_00875 0.52 -0.3 198,175 + AO353_00875 0.60 -1.5 198,175 + AO353_00875 0.60 -0.7 198,175 + AO353_00875 0.60 +0.7 198,175 + AO353_00875 0.60 +0.1 198,176 - AO353_00875 0.60 -0.3 198,176 - AO353_00875 0.60 +0.7 198,358 + AO353_00875 0.82 +1.1 198,358 + AO353_00875 0.82 +0.2 198,359 - AO353_00875 0.82 -0.3 198,502 + -0.8 198,502 + -2.6
Or see this region's nucleotide sequence