Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00260

Experiment: Rifampicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00245 and AO353_00250 are separated by 92 nucleotidesAO353_00250 and AO353_00255 are separated by 29 nucleotidesAO353_00255 and AO353_00260 overlap by 4 nucleotidesAO353_00260 and AO353_00265 are separated by 72 nucleotidesAO353_00265 and AO353_00270 are separated by 2 nucleotides AO353_00245: AO353_00245 - XRE family transcriptional regulator, at 45,190 to 45,537 _00245 AO353_00250: AO353_00250 - hypothetical protein, at 45,630 to 45,830 _00250 AO353_00255: AO353_00255 - hypothetical protein, at 45,860 to 46,339 _00255 AO353_00260: AO353_00260 - hypothetical protein, at 46,336 to 46,701 _00260 AO353_00265: AO353_00265 - hypothetical protein, at 46,774 to 47,007 _00265 AO353_00270: AO353_00270 - toprim domain protein, at 47,010 to 49,703 _00270 Position (kb) 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 45.604 kb on - strandat 45.604 kb on - strandat 45.604 kb on - strandat 45.630 kb on - strandat 45.630 kb on - strandat 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.876 kb on + strandat 45.876 kb on + strandat 45.987 kb on - strandat 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.075 kb on - strand, within AO353_00255at 46.075 kb on - strand, within AO353_00255at 46.086 kb on - strand, within AO353_00255at 46.086 kb on - strand, within AO353_00255at 46.102 kb on - strand, within AO353_00255at 46.355 kb on + strandat 46.363 kb on + strandat 46.364 kb on - strandat 46.364 kb on - strandat 46.439 kb on + strand, within AO353_00260at 46.439 kb on + strand, within AO353_00260at 46.440 kb on - strand, within AO353_00260at 46.477 kb on + strand, within AO353_00260at 46.603 kb on - strand, within AO353_00260at 46.603 kb on - strand, within AO353_00260at 46.646 kb on - strand, within AO353_00260at 46.646 kb on - strand, within AO353_00260at 46.700 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.880 kb on - strand, within AO353_00265at 46.968 kb on - strand, within AO353_00265at 46.968 kb on - strand, within AO353_00265at 46.968 kb on - strand, within AO353_00265at 46.968 kb on - strand, within AO353_00265at 47.005 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.036 kb on - strandat 47.036 kb on - strandat 47.036 kb on - strandat 47.036 kb on - strandat 47.036 kb on - strandat 47.036 kb on - strandat 47.038 kb on + strandat 47.038 kb on + strandat 47.038 kb on + strandat 47.039 kb on - strandat 47.039 kb on - strandat 47.039 kb on - strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.088 kb on + strandat 47.089 kb on - strandat 47.089 kb on - strandat 47.089 kb on - strandat 47.089 kb on - strandat 47.089 kb on - strandat 47.133 kb on + strandat 47.133 kb on + strandat 47.133 kb on + strandat 47.133 kb on + strandat 47.133 kb on + strandat 47.134 kb on - strandat 47.134 kb on - strandat 47.134 kb on - strandat 47.134 kb on - strandat 47.134 kb on - strandat 47.192 kb on + strandat 47.193 kb on - strandat 47.204 kb on - strandat 47.204 kb on - strandat 47.214 kb on + strandat 47.214 kb on + strandat 47.215 kb on - strandat 47.215 kb on - strandat 47.215 kb on - strandat 47.215 kb on - strandat 47.289 kb on + strand, within AO353_00270at 47.290 kb on - strand, within AO353_00270at 47.290 kb on - strand, within AO353_00270at 47.290 kb on - strand, within AO353_00270at 47.316 kb on - strand, within AO353_00270at 47.316 kb on - strand, within AO353_00270at 47.316 kb on - strand, within AO353_00270at 47.339 kb on + strand, within AO353_00270at 47.340 kb on - strand, within AO353_00270at 47.340 kb on - strand, within AO353_00270at 47.352 kb on + strand, within AO353_00270at 47.352 kb on + strand, within AO353_00270at 47.353 kb on - strand, within AO353_00270at 47.353 kb on - strand, within AO353_00270at 47.355 kb on + strand, within AO353_00270at 47.355 kb on + strand, within AO353_00270at 47.356 kb on - strand, within AO353_00270at 47.356 kb on - strand, within AO353_00270at 47.401 kb on + strand, within AO353_00270at 47.487 kb on + strand, within AO353_00270at 47.487 kb on + strand, within AO353_00270at 47.487 kb on + strand, within AO353_00270at 47.488 kb on - strand, within AO353_00270at 47.488 kb on - strand, within AO353_00270at 47.488 kb on - strand, within AO353_00270at 47.488 kb on - strand, within AO353_00270at 47.653 kb on + strand, within AO353_00270at 47.654 kb on - strand, within AO353_00270

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.005 mg/ml
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45,604 - +0.4
45,604 - -0.5
45,604 - -1.5
45,630 - -0.9
45,630 - +0.4
45,684 - AO353_00250 0.27 -1.2
45,684 - AO353_00250 0.27 +1.9
45,684 - AO353_00250 0.27 -2.4
45,684 - AO353_00250 0.27 +0.7
45,684 - AO353_00250 0.27 +0.1
45,684 - AO353_00250 0.27 +0.1
45,684 - AO353_00250 0.27 -1.2
45,684 - AO353_00250 0.27 +0.9
45,684 - AO353_00250 0.27 -0.3
45,854 + +0.2
45,854 + -1.3
45,854 + -0.0
45,854 + +1.7
45,854 + -0.8
45,854 + +0.4
45,854 + -0.0
45,855 - -0.3
45,855 - -0.3
45,855 - -0.9
45,855 - +0.9
45,855 - -0.6
45,855 - -0.2
45,855 - -0.9
45,855 - -1.3
45,855 - -0.9
45,855 - -2.1
45,876 + -0.1
45,876 + -0.3
45,987 - -0.3
46,071 - AO353_00255 0.44 -0.9
46,071 - AO353_00255 0.44 +0.9
46,071 - AO353_00255 0.44 +0.2
46,071 - AO353_00255 0.44 +0.5
46,071 - AO353_00255 0.44 +0.1
46,071 - AO353_00255 0.44 +1.7
46,071 - AO353_00255 0.44 +0.0
46,075 - AO353_00255 0.45 +0.3
46,075 - AO353_00255 0.45 -0.9
46,086 - AO353_00255 0.47 +3.5
46,086 - AO353_00255 0.47 +0.2
46,102 - AO353_00255 0.50 -1.1
46,355 + -0.7
46,363 + +0.6
46,364 - +2.1
46,364 - +0.5
46,439 + AO353_00260 0.28 -0.7
46,439 + AO353_00260 0.28 -0.9
46,440 - AO353_00260 0.28 -1.7
46,477 + AO353_00260 0.39 -1.3
46,603 - AO353_00260 0.73 +1.2
46,603 - AO353_00260 0.73 +1.7
46,646 - AO353_00260 0.85 -1.3
46,646 - AO353_00260 0.85 -0.6
46,700 - -1.0
46,714 - -0.0
46,714 - +0.7
46,714 - -1.1
46,714 - +1.0
46,714 - -0.9
46,880 - AO353_00265 0.45 +0.1
46,968 - AO353_00265 0.83 +1.2
46,968 - AO353_00265 0.83 -0.3
46,968 - AO353_00265 0.83 -1.7
46,968 - AO353_00265 0.83 +0.5
47,005 + -2.2
47,035 + -1.7
47,035 + -1.1
47,035 + -0.9
47,035 + +0.6
47,035 + +0.3
47,035 + -1.3
47,035 + +0.7
47,036 - +0.1
47,036 - -0.2
47,036 - +1.7
47,036 - -0.7
47,036 - +0.6
47,036 - -0.0
47,038 + -1.1
47,038 + +0.1
47,038 + -0.9
47,039 - +0.9
47,039 - -0.2
47,039 - +0.6
47,088 + -1.1
47,088 + +0.2
47,088 + -0.8
47,088 + +2.0
47,088 + -1.0
47,088 + -1.1
47,088 + +0.4
47,088 + -0.6
47,088 + -1.1
47,089 - -2.0
47,089 - +0.4
47,089 - -2.1
47,089 - +1.1
47,089 - -0.3
47,133 + +0.1
47,133 + +1.2
47,133 + -1.7
47,133 + -1.8
47,133 + -1.1
47,134 - +0.1
47,134 - +1.9
47,134 - -0.8
47,134 - +0.2
47,134 - -1.0
47,192 + +0.8
47,193 - +0.5
47,204 - -1.9
47,204 - +0.9
47,214 + -0.3
47,214 + -0.3
47,215 - +1.7
47,215 - -0.0
47,215 - +1.7
47,215 - +0.5
47,289 + AO353_00270 0.10 -0.7
47,290 - AO353_00270 0.10 -0.9
47,290 - AO353_00270 0.10 +1.0
47,290 - AO353_00270 0.10 -2.4
47,316 - AO353_00270 0.11 +0.8
47,316 - AO353_00270 0.11 -0.8
47,316 - AO353_00270 0.11 +1.1
47,339 + AO353_00270 0.12 -1.3
47,340 - AO353_00270 0.12 -0.5
47,340 - AO353_00270 0.12 +0.7
47,352 + AO353_00270 0.13 +0.4
47,352 + AO353_00270 0.13 +0.6
47,353 - AO353_00270 0.13 +0.2
47,353 - AO353_00270 0.13 -1.7
47,355 + AO353_00270 0.13 +0.5
47,355 + AO353_00270 0.13 -0.8
47,356 - AO353_00270 0.13 +2.4
47,356 - AO353_00270 0.13 +1.7
47,401 + AO353_00270 0.15 +0.9
47,487 + AO353_00270 0.18 -0.1
47,487 + AO353_00270 0.18 +1.5
47,487 + AO353_00270 0.18 +0.8
47,488 - AO353_00270 0.18 +1.2
47,488 - AO353_00270 0.18 -1.9
47,488 - AO353_00270 0.18 +0.5
47,488 - AO353_00270 0.18 -0.2
47,653 + AO353_00270 0.24 -0.2
47,654 - AO353_00270 0.24 +0.4

Or see this region's nucleotide sequence