Strain Fitness in Shewanella loihica PV-4 around Shew_3643

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,343,161	+		Shew_3641	0.56	+0.2
4,343,161	+		Shew_3641	0.56	-0.0
4,343,216	-		Shew_3641	0.66	-0.0
4,343,268	-		Shew_3641	0.76	-0.0
4,343,293	+		Shew_3641	0.80	-0.2
4,343,317	-		Shew_3641	0.85	+0.1
4,343,406	-				-1.1
4,343,501	-				+0.3
4,343,705	-		Shew_3642	0.43	+0.3
4,343,728	-		Shew_3642	0.48	-0.8
4,343,733	-		Shew_3642	0.49	-0.0
4,343,733	-		Shew_3642	0.49	+0.2
4,343,758	+		Shew_3642	0.53	+0.1
4,343,896	+		Shew_3642	0.78	+1.2
4,344,074	+		Shew_3643	0.16	+0.4
4,344,074	+		Shew_3643	0.16	-0.0
4,344,082	-		Shew_3643	0.19	-0.4
4,344,082	-		Shew_3643	0.19	-0.5
4,344,082	-		Shew_3643	0.19	+0.1
4,344,204	-		Shew_3643	0.75	-0.1
4,344,210	-		Shew_3643	0.78	-0.0
4,344,225	+		Shew_3643	0.84	-0.9
4,344,233	-		Shew_3643	0.88	-0.1
4,344,243	+				+0.2
4,344,256	-				+0.3
4,344,267	+				+0.0
4,344,327	+				+0.2
4,344,552	-				-0.7
4,344,564	-				+0.8
4,344,574	-				-0.0
4,344,587	+				-1.9
4,344,595	-				-1.2
4,344,612	+				+1.2
4,344,620	-				+1.0
4,344,620	-				-0.3
4,344,676	+				+0.3
4,344,689	+				-1.2
4,344,689	+				+0.1
4,344,690	+				-0.2
4,344,690	+				-1.1
4,344,697	-				-0.2
4,344,697	-				-0.4
4,344,697	-				+1.0
4,344,697	-				+0.2
4,344,697	-				+0.2
4,344,698	-				-0.2
4,344,710	+				+0.8
4,344,710	+				-0.2
4,344,710	+				+0.2
4,344,712	+				+0.5
4,344,712	+				-0.2
4,344,712	+				-0.0
4,344,712	+				+1.0
4,344,712	+				+0.1
4,344,717	+				-0.9
4,344,718	-				-1.3
4,344,718	-				+0.6
4,344,720	-				-0.6
4,344,720	-				+0.1
4,344,720	-				+1.3
4,344,720	-				+0.3
4,344,721	+				+0.1
4,344,722	+				+0.0
4,344,722	+				+1.0
4,344,722	+				+0.1
4,344,722	+				+0.0
4,344,722	+				-0.8
4,344,722	+				+0.6
4,344,722	+				+0.1
4,344,722	+				-0.3
4,344,722	+				+2.2
4,344,722	+				+0.6
4,344,722	+				-0.2
4,344,722	+				+1.8
4,344,727	+				+0.1
4,344,727	+				-0.6
4,344,729	+				+1.0
4,344,729	+				-0.5
4,344,729	+				-0.2
4,344,729	-				-0.2
4,344,729	+				-1.1
4,344,730	-				-0.3
4,344,730	-				-0.0
4,344,730	-				+0.2
4,344,730	-				+0.0
4,344,730	-				+0.0
4,344,730	-				-0.4
4,344,730	-				-0.2
4,344,730	-				+1.6
4,344,730	-				-0.1
4,344,730	-				+0.3
4,344,730	-				-1.5
4,344,735	-				+0.1
4,344,735	-				-0.0
4,344,737	-				+0.3
4,344,737	-				-0.2
4,344,743	+				+0.3
4,344,770	-				-0.8
4,344,818	-		Shew_3644	0.11	+0.2
4,344,821	+		Shew_3644	0.11	+0.2
4,344,821	+		Shew_3644	0.11	+0.0
4,344,829	-		Shew_3644	0.12	+0.3
4,344,852	+		Shew_3644	0.16	-0.6
4,344,860	-		Shew_3644	0.17	-0.1
4,344,861	+		Shew_3644	0.17	+0.2
4,344,869	-		Shew_3644	0.19	+0.1
4,344,869	-		Shew_3644	0.19	-0.2
4,344,869	-		Shew_3644	0.19	+0.1
4,344,869	-		Shew_3644	0.19	+0.1
4,344,869	-		Shew_3644	0.19	+0.4
4,344,869	-		Shew_3644	0.19	-0.0
4,344,890	-		Shew_3644	0.22	-0.3
4,344,916	+		Shew_3644	0.26	-0.1
4,344,922	+		Shew_3644	0.27	-0.3
4,344,937	-		Shew_3644	0.30	-0.2
4,344,937	-		Shew_3644	0.30	-0.4
4,345,054	+		Shew_3644	0.48	+0.1
4,345,054	+		Shew_3644	0.48	-0.1
4,345,055	+		Shew_3644	0.49	+0.4
4,345,055	+		Shew_3644	0.49	+0.2
4,345,055	+		Shew_3644	0.49	-0.4
4,345,055	+		Shew_3644	0.49	-0.1
4,345,055	+		Shew_3644	0.49	-0.2
4,345,062	+		Shew_3644	0.50	-0.0
4,345,062	+		Shew_3644	0.50	-0.8
4,345,062	+		Shew_3644	0.50	-1.3
4,345,062	+		Shew_3644	0.50	-0.5
4,345,062	+		Shew_3644	0.50	-1.4
4,345,062	+		Shew_3644	0.50	-0.4
4,345,062	+		Shew_3644	0.50	-0.0
4,345,062	+		Shew_3644	0.50	-0.4
4,345,062	+		Shew_3644	0.50	+1.9
4,345,062	+		Shew_3644	0.50	+0.7
4,345,062	+		Shew_3644	0.50	+0.1
4,345,062	+		Shew_3644	0.50	-0.4
4,345,062	+		Shew_3644	0.50	-0.3
4,345,062	+		Shew_3644	0.50	+0.3
4,345,062	+		Shew_3644	0.50	+0.4
4,345,062	+		Shew_3644	0.50	+0.5
4,345,062	+		Shew_3644	0.50	+0.3
4,345,062	+		Shew_3644	0.50	+1.4
4,345,062	+		Shew_3644	0.50	+0.1
4,345,062	+		Shew_3644	0.50	+0.9
4,345,062	+		Shew_3644	0.50	+0.2
4,345,062	+		Shew_3644	0.50	-0.3
4,345,062	-		Shew_3644	0.50	+0.3
4,345,062	+		Shew_3644	0.50	-1.3
4,345,062	+		Shew_3644	0.50	-0.1
4,345,062	+		Shew_3644	0.50	+0.6
4,345,062	+		Shew_3644	0.50	+0.0
4,345,062	+		Shew_3644	0.50	+0.3
4,345,062	+		Shew_3644	0.50	-0.8
4,345,063	-		Shew_3644	0.50	+0.0
4,345,063	-		Shew_3644	0.50	+0.1
4,345,063	-		Shew_3644	0.50	+0.0
4,345,063	-		Shew_3644	0.50	-0.6
4,345,063	-		Shew_3644	0.50	+0.3
4,345,063	-		Shew_3644	0.50	+0.7
4,345,063	-		Shew_3644	0.50	+0.1
4,345,063	-		Shew_3644	0.50	+0.3
4,345,069	+		Shew_3644	0.51	-1.2
4,345,070	-		Shew_3644	0.51	-0.5
4,345,070	-		Shew_3644	0.51	-0.1
4,345,070	-		Shew_3644	0.51	-0.5
4,345,070	-		Shew_3644	0.51	-0.2
4,345,070	-		Shew_3644	0.51	+0.2
4,345,070	-		Shew_3644	0.51	+0.4
4,345,070	-		Shew_3644	0.51	+0.4
4,345,070	-		Shew_3644	0.51	-0.1
4,345,070	-		Shew_3644	0.51	+0.1
4,345,070	-		Shew_3644	0.51	+0.8
4,345,070	-		Shew_3644	0.51	+0.2
4,345,070	-		Shew_3644	0.51	+0.7
4,345,070	-		Shew_3644	0.51	+0.2
4,345,070	-		Shew_3644	0.51	-0.8
4,345,070	-		Shew_3644	0.51	-0.4
4,345,070	-		Shew_3644	0.51	-2.7
4,345,070	-		Shew_3644	0.51	+0.2
4,345,070	-		Shew_3644	0.51	+0.5
4,345,074	-		Shew_3644	0.52	-0.3
4,345,077	-		Shew_3644	0.52	+0.0
4,345,125	+		Shew_3644	0.60	-0.1
4,345,152	-		Shew_3644	0.64	+0.3
4,345,165	+		Shew_3644	0.66	+0.4
4,345,165	+		Shew_3644	0.66	+0.5
4,345,167	+		Shew_3644	0.67	-0.0
4,345,167	+		Shew_3644	0.67	+0.6
4,345,167	+		Shew_3644	0.67	+0.7
4,345,167	+		Shew_3644	0.67	+0.9
4,345,168	+		Shew_3644	0.67	+0.1
4,345,168	+		Shew_3644	0.67	-0.0
4,345,173	+		Shew_3644	0.67	+0.5
4,345,173	-		Shew_3644	0.67	-1.5
4,345,173	+		Shew_3644	0.67	+0.1
4,345,173	+		Shew_3644	0.67	-1.7
4,345,173	+		Shew_3644	0.67	-1.2
4,345,173	+		Shew_3644	0.67	-0.8
4,345,174	+		Shew_3644	0.68	-0.1
4,345,175	-		Shew_3644	0.68	+0.2
4,345,175	-		Shew_3644	0.68	+0.1
4,345,181	-		Shew_3644	0.69	-0.1
4,345,181	-		Shew_3644	0.69	-0.3
4,345,181	-		Shew_3644	0.69	+1.0
4,345,181	-		Shew_3644	0.69	-0.1
4,345,181	-		Shew_3644	0.69	+0.5
4,345,181	-		Shew_3644	0.69	-0.4
4,345,181	-		Shew_3644	0.69	+0.4
4,345,181	-		Shew_3644	0.69	+1.2
4,345,187	-		Shew_3644	0.70	+0.2
4,345,192	+		Shew_3644	0.71	+0.6
4,345,193	-		Shew_3644	0.71	+0.1
4,345,200	-		Shew_3644	0.72	-0.4
4,345,202	+		Shew_3644	0.72	+0.6
4,345,202	+		Shew_3644	0.72	+0.8
4,345,202	+		Shew_3644	0.72	-0.4
4,345,202	+		Shew_3644	0.72	+0.0
4,345,205	+		Shew_3644	0.73	-0.4
4,345,205	+		Shew_3644	0.73	-0.2
4,345,205	+		Shew_3644	0.73	+0.6
4,345,205	+		Shew_3644	0.73	+0.8
4,345,205	+		Shew_3644	0.73	-0.0
4,345,205	+		Shew_3644	0.73	-0.0
4,345,205	+		Shew_3644	0.73	-0.3
4,345,205	+		Shew_3644	0.73	+0.3
4,345,205	+		Shew_3644	0.73	-0.6
4,345,205	+		Shew_3644	0.73	-0.6
4,345,205	+		Shew_3644	0.73	-0.5
4,345,205	+		Shew_3644	0.73	+0.8
4,345,205	+		Shew_3644	0.73	+0.4
4,345,205	+		Shew_3644	0.73	-0.5
4,345,205	+		Shew_3644	0.73	-0.3
4,345,205	+		Shew_3644	0.73	-0.7
4,345,205	+		Shew_3644	0.73	-0.3
4,345,205	+		Shew_3644	0.73	+0.1
4,345,205	+		Shew_3644	0.73	+0.2
4,345,205	+		Shew_3644	0.73	+0.5
4,345,205	+		Shew_3644	0.73	+1.0
4,345,210	-		Shew_3644	0.73	+0.2
4,345,210	-		Shew_3644	0.73	-0.3
4,345,210	-		Shew_3644	0.73	+0.2
4,345,210	+		Shew_3644	0.73	+0.1
4,345,213	-		Shew_3644	0.74	+0.9
4,345,213	-		Shew_3644	0.74	+0.3
4,345,213	-		Shew_3644	0.74	+0.1
4,345,213	-		Shew_3644	0.74	-0.7
4,345,213	-		Shew_3644	0.74	+0.9
4,345,213	-		Shew_3644	0.74	-0.4
4,345,213	-		Shew_3644	0.74	-0.0
4,345,213	-		Shew_3644	0.74	-0.1
4,345,213	-		Shew_3644	0.74	+0.2
4,345,213	-		Shew_3644	0.74	-0.1
4,345,213	-		Shew_3644	0.74	-0.1
4,345,213	-		Shew_3644	0.74	+0.5
4,345,213	-		Shew_3644	0.74	+0.1
4,345,213	-		Shew_3644	0.74	+0.1
4,345,213	-		Shew_3644	0.74	-0.2
4,345,213	-		Shew_3644	0.74	-0.2
4,345,213	-		Shew_3644	0.74	+0.5
4,345,213	-		Shew_3644	0.74	+0.2
4,345,213	-		Shew_3644	0.74	-0.7
4,345,213	-		Shew_3644	0.74	+0.1
4,345,213	-		Shew_3644	0.74	+0.0
4,345,213	-		Shew_3644	0.74	+0.0
4,345,213	-		Shew_3644	0.74	-0.4
4,345,213	-		Shew_3644	0.74	-0.2
4,345,213	-		Shew_3644	0.74	-0.1
4,345,213	-		Shew_3644	0.74	-1.5
4,345,213	-		Shew_3644	0.74	-0.1
4,345,213	-		Shew_3644	0.74	+0.0
4,345,215	+		Shew_3644	0.74	-2.5
4,345,215	+		Shew_3644	0.74	-0.3
4,345,215	+		Shew_3644	0.74	-0.1
4,345,215	+		Shew_3644	0.74	+1.6
4,345,215	+		Shew_3644	0.74	+1.5
4,345,215	+		Shew_3644	0.74	-0.9
4,345,215	+		Shew_3644	0.74	-0.8
4,345,215	+		Shew_3644	0.74	+0.1
4,345,215	+		Shew_3644	0.74	-0.6
4,345,215	+		Shew_3644	0.74	-0.3
4,345,215	+		Shew_3644	0.74	-0.2
4,345,215	+		Shew_3644	0.74	+0.4
4,345,223	-		Shew_3644	0.75	-0.0
4,345,223	-		Shew_3644	0.75	+0.1
4,345,223	-		Shew_3644	0.75	+0.2
4,345,223	-		Shew_3644	0.75	+0.6
4,345,227	+		Shew_3644	0.76	+0.3
4,345,228	+		Shew_3644	0.76	+0.9
4,345,229	-		Shew_3644	0.76	-0.7
4,345,229	-		Shew_3644	0.76	+0.6
4,345,237	+		Shew_3644	0.78	-0.8
4,345,237	+		Shew_3644	0.78	+1.0
4,345,237	+		Shew_3644	0.78	-0.0
4,345,245	-		Shew_3644	0.79	-0.2
4,345,245	-		Shew_3644	0.79	-1.1
4,345,245	-		Shew_3644	0.79	-0.2
4,345,245	-		Shew_3644	0.79	-0.4
4,345,245	-		Shew_3644	0.79	-0.5
4,345,245	-		Shew_3644	0.79	+1.4
4,345,253	-		Shew_3644	0.80	+0.0