Strain Fitness in Shewanella loihica PV-4 around Shew_3638

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,337,367	-				-1.0
4,337,513	-				-1.1
4,337,579	+				-1.3
4,337,630	+				-1.5
4,337,664	+				-1.3
4,337,709	+	ompR	Shew_3637	0.13	-1.4
4,337,803	+	ompR	Shew_3637	0.26	-1.5
4,337,819	+	ompR	Shew_3637	0.28	+0.1
4,337,863	-	ompR	Shew_3637	0.34	-0.7
4,337,928	+	ompR	Shew_3637	0.43	+0.0
4,338,050	+	ompR	Shew_3637	0.60	-0.7
4,338,152	-	ompR	Shew_3637	0.74	-0.8
4,338,320	-				-0.7
4,338,344	-				-0.0
4,338,420	-				-1.0
4,338,440	-				-1.2
4,338,556	-	envZ	Shew_3638	0.15	+0.8
4,338,630	+	envZ	Shew_3638	0.20	-0.4
4,338,630	+	envZ	Shew_3638	0.20	+0.2
4,338,845	+	envZ	Shew_3638	0.37	-0.4
4,338,991	-	envZ	Shew_3638	0.48	-1.1
4,339,013	-	envZ	Shew_3638	0.50	-0.7
4,339,053	+	envZ	Shew_3638	0.53	-0.5
4,339,053	+	envZ	Shew_3638	0.53	-1.0
4,339,053	+	envZ	Shew_3638	0.53	-1.7
4,339,053	+	envZ	Shew_3638	0.53	-0.9
4,339,053	+	envZ	Shew_3638	0.53	-1.0
4,339,061	-	envZ	Shew_3638	0.53	-0.8
4,339,099	+	envZ	Shew_3638	0.56	-1.9
4,339,107	-	envZ	Shew_3638	0.57	+1.2
4,339,176	-	envZ	Shew_3638	0.62	-0.7
4,339,241	+	envZ	Shew_3638	0.67	-1.3
4,339,251	+	envZ	Shew_3638	0.68	-1.6
4,339,283	-	envZ	Shew_3638	0.70	-1.4
4,339,287	+	envZ	Shew_3638	0.70	-1.5
4,339,295	-	envZ	Shew_3638	0.71	-1.5
4,339,561	+				-1.1
4,339,561	+				-0.8
4,339,561	+				+1.2
4,339,691	+				-0.3
4,339,882	+				+0.3
4,339,890	-				-0.0
4,340,057	-		Shew_3639	0.12	+0.3
4,340,233	-		Shew_3639	0.21	+0.1
4,340,296	-		Shew_3639	0.24	+0.5
4,340,454	+		Shew_3639	0.32	+0.9
4,340,561	+		Shew_3639	0.38	-0.8