Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3569 and Shew_3570 are separated by 274 nucleotides Shew_3570 and Shew_3571 overlap by 1 nucleotides Shew_3571 and Shew_3572 are separated by 83 nucleotides
Shew_3569: Shew_3569 - protein of unknown function, Spy-related (RefSeq), at 4,263,398 to 4,263,841
_3569
Shew_3570: Shew_3570 - two component transcriptional regulator (RefSeq), at 4,264,116 to 4,264,799
_3570
Shew_3571: Shew_3571 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 4,264,799 to 4,266,166
_3571
Shew_3572: Shew_3572 - alcohol dehydrogenase (RefSeq), at 4,266,250 to 4,267,230
_3572
Position (kb)
4264
4265
4266
4267 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4263.801 kb on + strand at 4264.098 kb on + strand at 4264.420 kb on - strand, within Shew_3570 at 4264.499 kb on - strand, within Shew_3570 at 4264.528 kb on - strand, within Shew_3570 at 4264.640 kb on + strand, within Shew_3570 at 4264.708 kb on + strand, within Shew_3570 at 4264.716 kb on - strand, within Shew_3570 at 4264.716 kb on - strand, within Shew_3570 at 4264.756 kb on + strand at 4264.775 kb on - strand at 4264.848 kb on + strand at 4265.033 kb on - strand, within Shew_3571 at 4265.063 kb on - strand, within Shew_3571 at 4265.175 kb on - strand, within Shew_3571 at 4265.236 kb on - strand, within Shew_3571 at 4265.364 kb on - strand, within Shew_3571 at 4265.373 kb on + strand, within Shew_3571 at 4265.373 kb on + strand, within Shew_3571 at 4265.375 kb on + strand, within Shew_3571 at 4265.381 kb on - strand, within Shew_3571 at 4265.381 kb on - strand, within Shew_3571 at 4265.383 kb on - strand, within Shew_3571 at 4265.490 kb on - strand, within Shew_3571 at 4265.569 kb on - strand, within Shew_3571 at 4265.611 kb on + strand, within Shew_3571 at 4266.019 kb on + strand, within Shew_3571 at 4266.057 kb on + strand at 4266.135 kb on + strand at 4266.135 kb on + strand at 4266.135 kb on + strand at 4266.886 kb on - strand, within Shew_3572 at 4266.911 kb on + strand, within Shew_3572 at 4266.911 kb on + strand, within Shew_3572 at 4267.064 kb on + strand, within Shew_3572
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 4,263,801 + +1.4 4,264,098 + -1.9 4,264,420 - Shew_3570 0.44 -3.0 4,264,499 - Shew_3570 0.56 -3.5 4,264,528 - Shew_3570 0.60 -3.5 4,264,640 + Shew_3570 0.77 -1.4 4,264,708 + Shew_3570 0.87 -3.9 4,264,716 - Shew_3570 0.88 -2.6 4,264,716 - Shew_3570 0.88 -3.4 4,264,756 + -3.5 4,264,775 - -2.9 4,264,848 + -2.2 4,265,033 - Shew_3571 0.17 -2.6 4,265,063 - Shew_3571 0.19 -3.2 4,265,175 - Shew_3571 0.27 -2.8 4,265,236 - Shew_3571 0.32 -2.1 4,265,364 - Shew_3571 0.41 -3.0 4,265,373 + Shew_3571 0.42 -2.5 4,265,373 + Shew_3571 0.42 -3.5 4,265,375 + Shew_3571 0.42 -3.1 4,265,381 - Shew_3571 0.43 -4.1 4,265,381 - Shew_3571 0.43 -2.2 4,265,383 - Shew_3571 0.43 -3.8 4,265,490 - Shew_3571 0.51 -2.7 4,265,569 - Shew_3571 0.56 -3.5 4,265,611 + Shew_3571 0.59 -3.5 4,266,019 + Shew_3571 0.89 -3.5 4,266,057 + -3.7 4,266,135 + -2.0 4,266,135 + -3.4 4,266,135 + -2.6 4,266,886 - Shew_3572 0.65 +0.2 4,266,911 + Shew_3572 0.67 +0.7 4,266,911 + Shew_3572 0.67 -2.3 4,267,064 + Shew_3572 0.83 -0.7
Or see this region's nucleotide sequence