Strain Fitness in Shewanella loihica PV-4 around Shew_3571

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3569 and Shew_3570 are separated by 274 nucleotidesShew_3570 and Shew_3571 overlap by 1 nucleotidesShew_3571 and Shew_3572 are separated by 83 nucleotides Shew_3569: Shew_3569 - protein of unknown function, Spy-related (RefSeq), at 4,263,398 to 4,263,841 _3569 Shew_3570: Shew_3570 - two component transcriptional regulator (RefSeq), at 4,264,116 to 4,264,799 _3570 Shew_3571: Shew_3571 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 4,264,799 to 4,266,166 _3571 Shew_3572: Shew_3572 - alcohol dehydrogenase (RefSeq), at 4,266,250 to 4,267,230 _3572 Position (kb) 4264 4265 4266 4267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4263.801 kb on + strandat 4264.098 kb on + strandat 4264.420 kb on - strand, within Shew_3570at 4264.499 kb on - strand, within Shew_3570at 4264.528 kb on - strand, within Shew_3570at 4264.640 kb on + strand, within Shew_3570at 4264.708 kb on + strand, within Shew_3570at 4264.716 kb on - strand, within Shew_3570at 4264.716 kb on - strand, within Shew_3570at 4264.756 kb on + strandat 4264.775 kb on - strandat 4264.848 kb on + strandat 4265.033 kb on - strand, within Shew_3571at 4265.063 kb on - strand, within Shew_3571at 4265.175 kb on - strand, within Shew_3571at 4265.236 kb on - strand, within Shew_3571at 4265.364 kb on - strand, within Shew_3571at 4265.373 kb on + strand, within Shew_3571at 4265.373 kb on + strand, within Shew_3571at 4265.375 kb on + strand, within Shew_3571at 4265.381 kb on - strand, within Shew_3571at 4265.381 kb on - strand, within Shew_3571at 4265.383 kb on - strand, within Shew_3571at 4265.490 kb on - strand, within Shew_3571at 4265.569 kb on - strand, within Shew_3571at 4265.611 kb on + strand, within Shew_3571at 4266.019 kb on + strand, within Shew_3571at 4266.057 kb on + strandat 4266.135 kb on + strandat 4266.135 kb on + strandat 4266.135 kb on + strandat 4266.886 kb on - strand, within Shew_3572at 4266.911 kb on + strand, within Shew_3572at 4266.911 kb on + strand, within Shew_3572at 4267.064 kb on + strand, within Shew_3572

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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4,263,801 + +1.4
4,264,098 + -1.9
4,264,420 - Shew_3570 0.44 -3.0
4,264,499 - Shew_3570 0.56 -3.5
4,264,528 - Shew_3570 0.60 -3.5
4,264,640 + Shew_3570 0.77 -1.4
4,264,708 + Shew_3570 0.87 -3.9
4,264,716 - Shew_3570 0.88 -2.6
4,264,716 - Shew_3570 0.88 -3.4
4,264,756 + -3.5
4,264,775 - -2.9
4,264,848 + -2.2
4,265,033 - Shew_3571 0.17 -2.6
4,265,063 - Shew_3571 0.19 -3.2
4,265,175 - Shew_3571 0.27 -2.8
4,265,236 - Shew_3571 0.32 -2.1
4,265,364 - Shew_3571 0.41 -3.0
4,265,373 + Shew_3571 0.42 -2.5
4,265,373 + Shew_3571 0.42 -3.5
4,265,375 + Shew_3571 0.42 -3.1
4,265,381 - Shew_3571 0.43 -4.1
4,265,381 - Shew_3571 0.43 -2.2
4,265,383 - Shew_3571 0.43 -3.8
4,265,490 - Shew_3571 0.51 -2.7
4,265,569 - Shew_3571 0.56 -3.5
4,265,611 + Shew_3571 0.59 -3.5
4,266,019 + Shew_3571 0.89 -3.5
4,266,057 + -3.7
4,266,135 + -2.0
4,266,135 + -3.4
4,266,135 + -2.6
4,266,886 - Shew_3572 0.65 +0.2
4,266,911 + Shew_3572 0.67 +0.7
4,266,911 + Shew_3572 0.67 -2.3
4,267,064 + Shew_3572 0.83 -0.7

Or see this region's nucleotide sequence