Strain Fitness in Shewanella loihica PV-4 around Shew_3413

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,063,842	-	purH	Shew_3412	0.49	-0.4
4,063,842	-	purH	Shew_3412	0.49	+0.3
4,063,936	+	purH	Shew_3412	0.55	-1.9
4,064,011	-	purH	Shew_3412	0.59	-1.1
4,064,163	+	purH	Shew_3412	0.69	+0.5
4,064,325	+	purH	Shew_3412	0.79	+0.4
4,064,432	-	purH	Shew_3412	0.86	-0.3
4,064,873	-		Shew_3413	0.13	-1.0
4,064,883	-		Shew_3413	0.13	-0.1
4,065,023	-		Shew_3413	0.24	-2.1
4,065,837	+		Shew_3413	0.87	-0.5
4,065,885	+				+2.6
4,066,088	+				-0.0
4,066,292	+				+0.1
4,066,331	-				+0.1
4,066,331	-				+0.7
4,066,362	+				+1.8
4,066,370	-				-1.7
4,066,370	-				+0.7
4,066,540	+				-0.5
4,066,603	+		Shew_3414	0.10	+0.2
4,066,808	+		Shew_3414	0.17	-0.3
4,066,824	+		Shew_3414	0.18	+0.1
4,066,824	+		Shew_3414	0.18	-0.9