Strain Fitness in Shewanella loihica PV-4 around Shew_3364

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3362 and Shew_3363 are separated by 116 nucleotidesShew_3363 and Shew_3364 are separated by 6 nucleotidesShew_3364 and Shew_3365 are separated by 40 nucleotides Shew_3362: Shew_3362 - hypothetical protein (RefSeq), at 4,010,448 to 4,010,858 _3362 Shew_3363: Shew_3363 - 3-dehydroquinate dehydratase, type II (RefSeq), at 4,010,975 to 4,011,427 _3363 Shew_3364: Shew_3364 - acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq), at 4,011,434 to 4,011,865 _3364 Shew_3365: Shew_3365 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 4,011,906 to 4,013,258 _3365 Position (kb) 4011 4012Strain fitness (log2 ratio) -1 0 1at 4011.162 kb on + strand, within Shew_3363at 4011.252 kb on - strand, within Shew_3363at 4011.380 kb on + strand, within Shew_3363at 4011.393 kb on - strandat 4011.403 kb on + strandat 4011.708 kb on - strand, within Shew_3364at 4011.745 kb on - strand, within Shew_3364at 4012.438 kb on - strand, within Shew_3365at 4012.438 kb on - strand, within Shew_3365at 4012.522 kb on - strand, within Shew_3365at 4012.842 kb on - strand, within Shew_3365

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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4,011,162 + Shew_3363 0.41 +0.3
4,011,252 - Shew_3363 0.61 +0.8
4,011,380 + Shew_3363 0.89 +0.5
4,011,393 - -1.4
4,011,403 + +0.2
4,011,708 - Shew_3364 0.63 -0.6
4,011,745 - Shew_3364 0.72 -0.4
4,012,438 - Shew_3365 0.39 +0.1
4,012,438 - Shew_3365 0.39 -0.4
4,012,522 - Shew_3365 0.46 +0.2
4,012,842 - Shew_3365 0.69 -0.8

Or see this region's nucleotide sequence