Strain Fitness in Shewanella loihica PV-4 around Shew_3304

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
3,945,133	-		Shew_3302	0.79	-0.8
3,945,250	+				+0.4
3,945,250	+				-0.7
3,945,250	+				+0.8
3,945,258	-				+0.7
3,945,258	-				-0.1
3,945,258	-				-0.1
3,945,258	-				-0.5
3,945,258	-				+0.1
3,945,258	-				+0.7
3,945,258	-				+0.3
3,945,439	-		Shew_3303	0.17	+0.8
3,945,439	-		Shew_3303	0.17	-1.0
3,945,483	-		Shew_3303	0.23	-1.1
3,945,491	-		Shew_3303	0.24	-1.0
3,945,518	+		Shew_3303	0.27	+0.2
3,945,518	-		Shew_3303	0.27	-0.4
3,945,639	+		Shew_3303	0.42	+0.2
3,945,647	-		Shew_3303	0.44	-1.3
3,945,831	-		Shew_3303	0.67	-0.8
3,945,880	+		Shew_3303	0.73	+0.2
3,946,299	+		Shew_3304	0.25	+0.5
3,946,754	-		Shew_3304	0.77	-1.2
3,946,917	-				-0.5
3,946,969	-				-0.4
3,947,070	+				+2.1
3,947,165	+				+1.7
3,947,694	+		Shew_3305	0.60	+0.6
3,947,770	+		Shew_3305	0.68	+1.2