Strain Fitness in Shewanella loihica PV-4 around Shew_3190

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
3,797,676	+				+1.1
3,797,721	+				+0.3
3,797,762	-				+0.1
3,797,787	+				+0.3
3,798,163	+		Shew_3189	0.34	+2.0
3,798,164	+		Shew_3189	0.34	+0.2
3,798,172	-		Shew_3189	0.36	+0.8
3,798,172	-		Shew_3189	0.36	+1.2
3,798,220	+		Shew_3189	0.44	+0.6
3,798,265	-		Shew_3189	0.52	+0.6
3,798,394	-		Shew_3189	0.76	-1.0
3,798,517	-				+0.4
3,798,622	-				-0.4
3,798,622	-				-0.3
3,798,622	-				-0.6
3,799,425	-		Shew_3190	0.53	-1.4
3,799,447	+		Shew_3190	0.54	-1.2
3,799,611	+		Shew_3190	0.65	-1.5
3,799,665	+		Shew_3190	0.69	-0.5
3,799,844	-		Shew_3190	0.81	-0.3
3,799,862	-		Shew_3190	0.83	-0.5
3,799,911	+		Shew_3190	0.86	-1.0
3,799,930	-		Shew_3190	0.87	-1.5
3,799,981	+				-0.3
3,799,983	+				-1.4
3,800,161	-				-2.3
3,800,167	-				-0.5
3,800,274	-				-1.6
3,800,276	+				-2.8
3,800,331	-				-1.4
3,800,559	+				-0.3
3,800,559	+				+2.4
3,800,559	+				-0.2
3,800,559	+				-0.8
3,800,559	+				+0.8
3,800,567	-				+1.0
3,800,567	-				+1.1
3,800,567	-				+0.7
3,800,567	-				+1.2
3,800,567	-				+0.7
3,800,567	-				-1.0
3,800,567	-				+0.7
3,801,087	+				-0.2
3,801,095	-				-0.4
3,801,095	-				-0.4